LOC122343031 (LOC107563545,LOC107564010)


Basic Information

Item Value
gene id LOC122343031
gene name LOC107563545,LOC107564010
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21449517 ~ 21452862 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237315.1
CAGAAAGAGATTCACAGATCAGAGTCTGTCCTCCAGAATCATCTCCCACATTAAGACGTCTCGTAgtctctacatcatgtgccacattcctgtgttctgctggatcacagccacagtacttcaggatattctcactgagaacaatgaagagaacatcagcacaacactcactgaaatgtacattcacttcctgAGGATACAGATGAACATGAAGAGTCAGAAATATGGCAAACAACAAGACGGAGAATGTTCAGAGCACTTACTTTTAAATAGAGAGATGATTCTGAAGTTAGCCAAGCTAGCGTTTGAACAGCTGAAGcaggaaaacattgtgttctatGAGAAAGATCTGAAAGCATGTGGTATTGATGTGAGTAAAGATGCTGAGTTCACAGGAATGATCGCTCAGATCTTTAAGAAGGAAGTTGGACTTTATAAGAGAAAGGTCTTCTGCTTTGTGCATCTGAGCGTTCAAGAGTTCCTCGCTGCAGTGCATGTGTTCACCtgttacctgaaaaaaaacaagcaagagcttatgtttttctttgagaATTCACAAACTAAAGTCATACAAAATCTTACATTTCCTTTTAGAAAGGTCAAATGGCATGACTTAACAGAGAGAGCCATTGAAAAAGCAATGCAGAGTAAGAGAGGGCATCTGGACCTTTTCCTGCGGTTTCTGATGGGAATTTCACTGGAATCCAGTCAAAATTTGCTCAAaggcctgatcacacacacCAAAGACACCACAGAGAGCATCAGAAATCTAAGTGCACACATTAAAGAATTACAACAACAGGACATCTCAGATGAAACTTCAGTCAACCTGTTCTACTGCTTACTTGAGCTCAAAGATCATTCATTATATGAGGAAATACAGAGTTACctcagttcaaatgaacatccaGGAAGAGATCTCTCGTCTTCAATGTGCACAGTGCTGACCTACATACTACTGATGTCAGAGAAGGTGCTGGATGAGTTCAACCCAAAGAGGTTCACATCAGAACAATCAGATTGCAGGAGACTCATTCCAGCtgtgagatgctgcagaaacgctctATTTGAAAGCTgtggttttgatgaaacatgctgtgaaactctttcttctgctctacaatcatcaaaccatctgacagagctggacctgagtaacaatgatctgcaggattcaggagtgaagctgctttctgatggactgaagagttcaCACTGTAGACTGAAGATAATGAGgtTGTCAGGCTGcatggtgacagaggaaggctgtggttatgtgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatcctggagattcaggagtgaagctgctctctgaaaaactggaggatccaaactgctcactaaataaactcaagtatgttATGCAGGAGAGGTTTTTGGGGTTTATTGTTTAACCCTT

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237315.1 True 1455 mRNA 0.42 3 21449517 21452862

Neighbor

gene id symbol gene type direction distance location
LOC122342295 LOC107573707,LOC107575631,LOC107689603,LOC107741456,LOC107667978 coding upstream 7 21447240 ~ 21449510 (+)
LOC122342293 NA coding upstream 49369 21398817 ~ 21400148 (+)
LOC122343117 NA coding upstream 69878 21377538 ~ 21379639 (+)
LOC122342289 LOC107685875,LOC107749047,LOC107728228 coding upstream 143881 21292312 ~ 21305636 (+)
LOC122342966 LOC107563536 coding upstream 219413 21222570 ~ 21230104 (+)
LOC122343024 NA coding downstream 191457 21644319 ~ 21650178 (+)
LOC122342967 LOC107569100,LOC107575457,LOC107679413,LOC107566978 coding downstream 220858 21673720 ~ 21690532 (+)
LOC122343020 LOC107667978,LOC107741456,LOC107575631,LOC107563545 coding downstream 220940 21673802 ~ 21809079 (+)
LOC122343144 NA coding downstream 288461 21741323 ~ 21742305 (+)
LOC122343035 NA coding downstream 356294 21809156 ~ 21814437 (+)
G30110 LOC107718524,LOC107563870 non-coding upstream 74980 21369422 ~ 21374537 (+)
G30085 NA non-coding upstream 112493 21311555 ~ 21337024 (+)
G30090 LOC107749046 non-coding upstream 148510 21276110 ~ 21301007 (+)
G30077 NA non-coding upstream 201092 21248187 ~ 21248425 (+)
LOC122343163 NA non-coding upstream 282275 21163756 ~ 21167242 (+)
G30132 NA non-coding downstream 26695 21479557 ~ 21522253 (+)
G30133 LOC107749047,LOC107571854,LOC107728228,LOC107669894 non-coding downstream 32850 21485712 ~ 21527011 (+)
G30134 NA non-coding downstream 43961 21496823 ~ 21498381 (+)
G30136 NA non-coding downstream 46002 21498864 ~ 21499514 (+)
G30130 NA non-coding downstream 296148 21749010 ~ 21811284 (+)
LOC122342286 LOC107578117 other upstream 275177 21169193 ~ 21174340 (+)
G30058 NA other upstream 306686 21118562 ~ 21142831 (+)
G29961 NA other upstream 742671 20696672 ~ 20706846 (+)
G29921 NA other upstream 1080701 20367675 ~ 20368816 (+)
LOC122342270 NA other upstream 1102793 20344346 ~ 20346724 (+)
G30115 NA other downstream 186678 21639540 ~ 21641756 (+)
G30218 LOC106676322,LOC106676931,LOC106676323,LOC107752219,LOC106675762,LOC106674878,LOC106676183 other downstream 778608 22231470 ~ 22231924 (+)
LOC122342310 LOC107685875,LOC107671223,LOC107749047,LOC107728228,LOC107576424 other downstream 844035 22296897 ~ 22305148 (+)
LOC122343019 LOC107705900 other downstream 1208964 22661826 ~ 22682712 (+)
LOC122342317 NA other downstream 1325121 22777983 ~ 22780139 (+)

Expression


Co-expression Network