LOC122343037 (LOC107698808,LOC107743352)


Basic Information

Item Value
gene id LOC122343037
gene name LOC107698808,LOC107743352
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18950727 ~ 18953599 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237335.1
ATACCTCCAAATACTTGTTGCGTCTGCTAGCACAGTATAACGCGCAACAACTTTTCTCCTCAAAGACGGGTTTTAGTGAATTTCTCGCTGCCGGTCGCTCGGTGGGCGGAGCTCCAGCTGACGCTGACGTCGGAGGAAGTGGAGACGCGTCGTGCGCGCGCGTGGTTTCAGCTGAAGAAAGCAAACTGAAGCAGCTGAGATCGATGTGACACCGTTATAAAGATGGTGTTCATTAAACAGGAGAGTGAAGACGTTAAGATTGAAGAAACATTCACAGTCAAACATGAAGATACTGAGGAACAAGTAAAAATGGTGgttattaaagaggagagagaaggcATTAAGATTGAAGAAACGTTTGCAGTCAAACATGAAGATACTGAGGAACGAACAAAGATGGAGgttattaaagaggagagtgaagaaATGAAGACTGAAGAAACATTGACAGTCAAACATGAAGACACAgaggaacaaacagACCCGCTAGAAGAAAGAAGTGAAGAACTAAATGAAACGGAAGGCAAAGATCGGTTTAAGAAAGATTTTACTGGAGAACATCTTAGTTGCTCGCAATTACCTAAATGGACTTTAGAAAAGAAAGTAACTAGGAGTCACTTCGgttgccaacagtgtggaaagagttttaataaacaaagaaCCCTTAACATTCACTTAAGAACTCACACGGGAGAGAAACCTCACACCTGCTCTCGATGTGGACTGAGCTTCACTCAAAAAGGAACCCTTAACAGGCACATTAGAATTCACACCGAAGAGAAGACCTACTCCTGCAAACTGTGTGGAAGTAGTTTTATACAAAACGGAGACCTTAAAAACCATATGAGAATACACagcggagagaagccttacacctgcccacagtgtggaaagagtttctgTCAAAAAGGAAATCTCAAAGTCCACATGAGCGTTCACTCCGCAGAGAGACATTTCAGCTGCCAACTGTGTGGGAGAAGTTTTACCAAAAAAGAAAGCCTCGAAATCCATTTGAGAATCCACACTGGTGAGAAGCCCtacacctgccaacagtgtggaaagagtttctgTCAAAAAGGGAATCTCAAAGTCCACGTGAGCGCTCACGCTCGAGAGAGCGAATTCAGCTGCCGACAATGTGCAAAGCGTTTTACTAAAAAGGAAAGCCTTGATATCCATTTGAGAATCCACAACGGGGAGAAGCCTTACGCCTGCCAACAGTGTGCGAAAAGTTTCGTTAAAAAAGGGGCCCTCAATATGCACAACAGAATTCAtaccggagagaaaccttttGTCTGCCCTCAGTGTGGACTAGGTTTCACTCAAAAAGGAACCCTCAACAGCCACATTAGAAGTCAtactggagagaaaccttacgCCTGCAAACTGTGTGGAAGTAGTTTTACTCGAAAAGGACGCCTCAAAACCCATGTGAGATGTCATGCTGTATGCCTTTTACCTTCCagcagtgtggaaagagttaaCAAGGAAACTTCGAAGTCCACATTAGTGGGAGATTTCAGCTGCTAATCAAAATGTTTCGCTAAAAAGGGAAACCTTGAAACCTCAAGTTCTCAATAGAGAAAATCCGTTCATATTCACATGAGTGTTCACAATGAAATCCAAAACATCCCTTGATGTGActgtttaaattcagttttcaaTAAATGAGCTGCTCTCTA
>XM_043237336.1
TTTTAACGCTTACTATGATACTGTTTGTTTGCGACGTGAAGCTCATTGGTCGCTATTGAATGCAATTCGGTCGCTGGCGAGTGATGAAGAAACCGAGTCTTTTGGGGATCCGAGTCAGCTGAAACGATTCTCTGTTTTGAATCGCTCGAAACACAGAGGGATGAACTTTACATCAAACTGAAGCAGCTGAGATCGATGTGACACCGTTATAAAGATGGTGTTCATTAAACAGGAGAGTGAAGACGTTAAGATTGAAGAAACATTCACAGTCAAACATGAAGATACTGAGGAACAAGTAAAAATGGTGgttattaaagaggagagagaaggcATTAAGATTGAAGAAACGTTTGCAGTCAAACATGAAGATACTGAGGAACGAACAAAGATGGAGgttattaaagaggagagtgaagaaATGAAGACTGAAGAAACATTGACAGTCAAACATGAAGACACAgaggaacaaacagACCCGCTAGAAGAAAGAAGTGAAGAACTAAATGAAACGGAAGGCAAAGATCGGTTTAAGAAAGATTTTACTGGAGAACATCTTAGTTGCTCGCAATTACCTAAATGGACTTTAGAAAAGAAAGTAACTAGGAGTCACTTCGgttgccaacagtgtggaaagagttttaataaacaaagaaCCCTTAACATTCACTTAAGAACTCACACGGGAGAGAAACCTCACACCTGCTCTCGATGTGGACTGAGCTTCACTCAAAAAGGAACCCTTAACAGGCACATTAGAATTCACACCGAAGAGAAGACCTACTCCTGCAAACTGTGTGGAAGTAGTTTTATACAAAACGGAGACCTTAAAAACCATATGAGAATACACagcggagagaagccttacacctgcccacagtgtggaaagagtttctgTCAAAAAGGAAATCTCAAAGTCCACATGAGCGTTCACTCCGCAGAGAGACATTTCAGCTGCCAACTGTGTGGGAGAAGTTTTACCAAAAAAGAAAGCCTCGAAATCCATTTGAGAATCCACACTGGTGAGAAGCCCtacacctgccaacagtgtggaaagagtttctgTCAAAAAGGGAATCTCAAAGTCCACGTGAGCGCTCACGCTCGAGAGAGCGAATTCAGCTGCCGACAATGTGCAAAGCGTTTTACTAAAAAGGAAAGCCTTGATATCCATTTGAGAATCCACAACGGGGAGAAGCCTTACGCCTGCCAACAGTGTGCGAAAAGTTTCGTTAAAAAAGGGGCCCTCAATATGCACAACAGAATTCAtaccggagagaaaccttttGTCTGCCCTCAGTGTGGACTAGGTTTCACTCAAAAAGGAACCCTCAACAGCCACATTAGAAGTCAtactggagagaaaccttacgCCTGCAAACTGTGTGGAAGTAGTTTTACTCGAAAAGGACGCCTCAAAACCCATGTGAGATGTCATGCTGTATGCCTTTTACCTTCCagcagtgtggaaagagttaaCAAGGAAACTTCGAAGTCCACATTAGTGGGAGATTTCAGCTGCTAATCAAAATGTTTCGCTAAAAAGGGAAACCTTGAAACCTCAAGTTCTCAATAGAGAAAATCCGTTCATATTCACATGAGTGTTCACAATGAAATCCAAAACATCCCTTGATGTGActgtttaaattcagttttcaaTAAATGAGCTGCTCTCTA
>XM_043237337.1
TTTTAACGCTTACTATGATACTGTTTGTTTGCGACGTGAAGCTCATTGGTCGCTATTGAATGCAATTCGGTCGCTGGCGAGTGATGAAGAAACCGAGTCTTTTGGGGATCCGAGTCAGCTGAAACGATTCTCTGTTTTGAATCGCTCGAAACACAGAGGGATGAACTTTACATGTAACTTAAATGTACCTCAATTCATTTGAGTCTTGGTTTTAGTTGTTTATTTGTCTCGCAAACTGAAGCAGCTGAGATCGATGTGACACCGTTATAAAGATGGTGTTCATTAAACAGGAGAGTGAAGACGTTAAGATTGAAGAAACATTCACAGTCAAACATGAAGATACTGAGGAACAAGTAAAAATGGTGgttattaaagaggagagagaaggcATTAAGATTGAAGAAACGTTTGCAGTCAAACATGAAGATACTGAGGAACGAACAAAGATGGAGgttattaaagaggagagtgaagaaATGAAGACTGAAGAAACATTGACAGTCAAACATGAAGACACAgaggaacaaacagACCCGCTAGAAGAAAGAAGTGAAGAACTAAATGAAACGGAAGGCAAAGATCGGTTTAAGAAAGATTTTACTGGAGAACATCTTAGTTGCTCGCAATTACCTAAATGGACTTTAGAAAAGAAAGTAACTAGGAGTCACTTCGgttgccaacagtgtggaaagagttttaataaacaaagaaCCCTTAACATTCACTTAAGAACTCACACGGGAGAGAAACCTCACACCTGCTCTCGATGTGGACTGAGCTTCACTCAAAAAGGAACCCTTAACAGGCACATTAGAATTCACACCGAAGAGAAGACCTACTCCTGCAAACTGTGTGGAAGTAGTTTTATACAAAACGGAGACCTTAAAAACCATATGAGAATACACagcggagagaagccttacacctgcccacagtgtggaaagagtttctgTCAAAAAGGAAATCTCAAAGTCCACATGAGCGTTCACTCCGCAGAGAGACATTTCAGCTGCCAACTGTGTGGGAGAAGTTTTACCAAAAAAGAAAGCCTCGAAATCCATTTGAGAATCCACACTGGTGAGAAGCCCtacacctgccaacagtgtggaaagagtttctgTCAAAAAGGGAATCTCAAAGTCCACGTGAGCGCTCACGCTCGAGAGAGCGAATTCAGCTGCCGACAATGTGCAAAGCGTTTTACTAAAAAGGAAAGCCTTGATATCCATTTGAGAATCCACAACGGGGAGAAGCCTTACGCCTGCCAACAGTGTGCGAAAAGTTTCGTTAAAAAAGGGGCCCTCAATATGCACAACAGAATTCAtaccggagagaaaccttttGTCTGCCCTCAGTGTGGACTAGGTTTCACTCAAAAAGGAACCCTCAACAGCCACATTAGAAGTCAtactggagagaaaccttacgCCTGCAAACTGTGTGGAAGTAGTTTTACTCGAAAAGGACGCCTCAAAACCCATGTGAGATGTCATGCTGTATGCCTTTTACCTTCCagcagtgtggaaagagttaaCAAGGAAACTTCGAAGTCCACATTAGTGGGAGATTTCAGCTGCTAATCAAAATGTTTCGCTAAAAAGGGAAACCTTGAAACCTCAAGTTCTCAATAGAGAAAATCCGTTCATATTCACATGAGTGTTCACAATGAAATCCAAAACATCCCTTGATGTGActgtttaaattcagttttcaaTAAATGAGCTGCTCTCTA

Function

NR:

description
PREDICTED: gastrula zinc finger protein XlCGF8.2DB-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237335.1 False 1682 mRNA 0.43 3 18950727 18953599
XM_043237336.1 False 1674 mRNA 0.42 3 18950924 18953599
XM_043237337.1 True 1732 mRNA 0.41 3 18950924 18953599

Neighbor

gene id symbol gene type direction distance location
LOC122343092 NA coding upstream 13062 18933707 ~ 18937665 (+)
LOC122343048 LOC107698963 coding upstream 28217 18918600 ~ 18922510 (+)
LOC122342974 NA coding upstream 35705 18908916 ~ 18915022 (+)
LOC122343078 LOC107730199 coding upstream 52937 18894901 ~ 18897790 (+)
LOC122343055 LOC107554755,LOC107730198,LOC107663244 coding upstream 80944 18865853 ~ 18869783 (+)
LOC122342236 NA coding downstream 7063 18960662 ~ 18962974 (+)
LOC122342238 NA coding downstream 110426 19064025 ~ 19067883 (+)
LOC122342239 NA coding downstream 193402 19147001 ~ 19150635 (+)
LOC122342242 NA coding downstream 311756 19265355 ~ 19268050 (+)
LOC122342246 NA coding downstream 491962 19445561 ~ 19449833 (+)
G29777 NA non-coding upstream 18037 18932319 ~ 18932690 (+)
LOC122343164 NA non-coding upstream 42903 18903235 ~ 18907824 (+)
G29633 NA non-coding upstream 135449 18814883 ~ 18815278 (+)
G29627 NA non-coding upstream 165481 18785045 ~ 18785246 (+)
G29600 NA non-coding upstream 285644 18662860 ~ 18665083 (+)
G29797 NA non-coding downstream 13788 18967387 ~ 18967714 (+)
G29803 NA non-coding downstream 92111 19045710 ~ 19053414 (+)
G29809 NA non-coding downstream 126169 19079768 ~ 19080189 (+)
LOC122343175 NA non-coding downstream 416172 19369771 ~ 19371889 (+)
LOC122343189 NA non-coding downstream 452304 19405903 ~ 19406459 (+)
G29642 NA other upstream 64325 18883179 ~ 18886402 (+)
G29545 NA other upstream 489410 18436460 ~ 18461317 (+)
G29526 NA other upstream 649538 18300415 ~ 18301189 (+)
atp5mj NA other upstream 1909897 17038419 ~ 17040830 (+)
G28982 NA other upstream 2476346 16473898 ~ 16474381 (+)
G29814 LOC107660256 other downstream 336621 19290220 ~ 19342911 (+)
G29835 NA other downstream 777663 19731262 ~ 19786128 (+)
LOC122343071 NA other downstream 792135 19745734 ~ 19750074 (+)
LOC122343063 NA other downstream 1084334 20037933 ~ 20043453 (+)
LOC122342270 NA other downstream 1390747 20344346 ~ 20346724 (+)

Expression


Co-expression Network