ttll1 (ttll1,LOC102779306)


Basic Information

Item Value
gene id ttll1
gene name ttll1,LOC102779306
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24449021 ~ 24453208 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237342.1
GCTGGTGACGCCATCGCCCCGGGAAATGACGCGGCTCGCGGAGGCGGAAGTGGAGCGCGTTGCTATGGGCTGCTGCTGGGATGCTGTCAGATCGTGAGAAGAAGGCAGCGTTCAGGATGAGGCTGTGACTGAGCGGGTGTGATGGCTGGGAAGGTGAAGTGGGTGACGGACATCGAGAAATCAGTGCTGATCAATAACTTTGAGAAGAGAGGATGGATCCAGGTGACGGACAGCGACGACTGGAACTTCTACTGGATGAGCATCCAGACCATCCGTAACGTCTTCAGCGTGGACACCGGCTACCGCCTGTCCGACGACCAGATGGTCAATCACTTCCCCAACCACTACGAGCTGACCAGGAAGGACCTGATGATCAAGAACATCAAGCGCTACAGGAAGGAGCTGGAGAAGGAGGCCAGTCCTTTAGCGGAGAAGGACGAGAACGGCAAACACCTGTACCTGGATTTCGTGCCGGTCACCTTCATGCTGCCGGCCGACTACAACCTGTTCGTGGAGGAGTTTCGCAAGAGCCCGTCCAGCACGTGGATCATGAAGCCGTGTGGGAAGGCGCAGGGCAAAGGCATCTTCCTCATCAACAAGCTCTCCCAGATCAAGAAGTGGTCCCGGGACAGCCGCACCTCCACGTTCGTGGCGGCCAACAGCGGGAAGGAGGCCTACGTCATCTCCCTGTACATCGATAACCCGCTCCTGATCGGAGGGAAGAAGTTTGACCTGAGGCTCTATGTGCTGGTCACCAGCTACAGGCCGCTCAAGTGCTACATGTACAAGCTGGGATTCTGCCGCTTCTGCACGGTCAAATACACCCCGAGCACCAGTGAGCTGGACAACATGTTCGTGCACCTCACCAACGTGGCCATCCAGAAGCACGGCgACGACTATAATCACGTCCACGGCGGAAAGTGGACAGTCAGTAACCTGCGTCTGTATCTGGAGAGCACCAGAGGACGGGACGTCACTAATCACCTGTTTGACCAGATCCACTGGATCATCGTCCAGTCCCTGAAAGCTGTGGCTCCCGTCATGAATAACGACAAGCACTGCTTCGAGTGCTACGGTTACGACATCATCATCGATGATAAACTCAAGCCGTGGCTGATCGAGgtgaaCGCGTCTCCTTCGCTCACCTCCAGCACGGCTAACGACCGCATCCTGAAGTACAACCTGATCAACGACACGCTGAACATCGTCACGCCGAACGCCGAGATCCCGGACTGCCGCTGGAACCGCAGTCTGCCCAAAGAGGCTCTGGGACACTACCAAGTGCTTTACGACGAGGAGCAGGCTCTGAGCGAGAGCGCCGAACGAGACCTCAGGAGCCGCTCGGGTCAGCCGCTGGGGTCAAAGGGCAGCAGGTCGAGCAGCGTCAGGCCCTTCCCGGCCACCTGGAAGTGACGAGGACGGCCGCGTCTGCATGAAGAACAGTTGATATATCTACCAGCCTGTGCTTCCAGCTCAGGTCTAATGACTCGCAGCGGTCCGGTTCACAACCCCAGTGAAGATAACCAGAGGCCCCTGGGACACGGCCTTACAGTACACCCACCCAGAAAGGCATTTCcctgtttatgtaaatgttttttatttcttgttatgCCAGTTTACAATTAGAACCCTCTTCTGCATAACTTGTGTTTGGATTAACTGATTCTTGACATGAATGTAGATGCTGGAATGACtttaagaagaaaataaactaaCATTGAAATTA

Function

symbol description
ttll1 Predicted to enable tubulin binding activity and tubulin-glutamic acid ligase activity. Predicted to be involved in microtubule cytoskeleton organization and protein polyglutamylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be located in cytoplasm and microtubule. Predicted to be active in cilium. Orthologous to human TTLL1 (tubulin tyrosine ligase like 1).

NR:

description
probable tubulin polyglutamylase TTLL1 isoform X1

GO: NA

KEGG:

id description
K16599 TTLL1; tubulin polyglutamylase TTLL1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237342.1 True 1726 mRNA 0.55 10 24449021 24453208

Neighbor

gene id symbol gene type direction distance location
LOC122343053 NA coding upstream 15195 24427508 ~ 24433826 (+)
LOC122342343 NA coding upstream 33795 24414458 ~ 24415226 (+)
LOC122342339 NA coding upstream 126883 24319640 ~ 24322138 (+)
LOC122343118 LOC107677819,LOC107725800 coding upstream 136274 24309427 ~ 24312747 (+)
LOC122342333 NA coding upstream 189505 24252667 ~ 24259516 (+)
LOC122343091 NA coding downstream 18799 24472007 ~ 24476783 (+)
terfa NA coding downstream 27034 24480242 ~ 24485353 (+)
cct2 cct2 coding downstream 39869 24493077 ~ 24497580 (+)
LOC122343045 nots,LOC107677818,LOC107569115,LOC107725781 coding downstream 45399 24498607 ~ 24502130 (+)
LOC122343032 NA coding downstream 115786 24568994 ~ 24574432 (+)
LOC122343172 NA non-coding upstream 29453 24417843 ~ 24419568 (+)
G30819 NA non-coding upstream 134733 24310339 ~ 24314288 (+)
G30754 NA non-coding upstream 439130 24003642 ~ 24009891 (+)
G30751 LOC107671223,LOC107569100,LOC107575457,LOC107747635,LOC107679413,LOC107566978,LOC107670352 non-coding upstream 447457 23978432 ~ 24001564 (+)
LOC122343177 NA non-coding upstream 472501 23967713 ~ 23976520 (+)
G30812 NA non-coding downstream 2814 24456022 ~ 24486887 (+)
G30877 NA non-coding downstream 261489 24714697 ~ 24714998 (+)
G31223 NA non-coding downstream 535659 24988867 ~ 24989274 (+)
G31226 NA non-coding downstream 861015 25314223 ~ 25314596 (+)
G31228 NA non-coding downstream 861971 25315179 ~ 25315553 (+)
LOC122342990 NA other upstream 307575 24133050 ~ 24141446 (+)
LOC122342976 usp15,LOC107685889 other upstream 317534 24117289 ~ 24131487 (+)
LOC122342321 LOC107741609,LOC107575420,LOC107710255 other upstream 1281014 23163695 ~ 23168007 (+)
G30632 NA other upstream 1289265 23157559 ~ 23159756 (+)
G30636 LOC107575420,LOC107667978,LOC107563545,LOC107741456 other upstream 1318832 23129106 ~ 23130189 (+)
LOC122343028 pacsin2,LOC107725788,LOC107569113 other downstream 1062 24454270 ~ 24466400 (+)
LOC122343023 LOC107568558,LOC107685877,LOC107725785,LOC107728057 other downstream 12246 24465454 ~ 24471450 (+)
LOC122343159 NA other downstream 183144 24636352 ~ 24638654 (+)
LOC122343125 NA other downstream 185881 24639089 ~ 24646601 (+)
LOC122343086 NA other downstream 219683 24672891 ~ 24674412 (+)

Expression


Co-expression Network