LOC122343041 (zbtb24,LOC107736039)


Basic Information

Item Value
gene id LOC122343041
gene name zbtb24,LOC107736039
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22105236 ~ 22107457 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237344.1
aagatttaaaatgccCGTGTTGTagatattaatgtaaaataaacatgctttcCTTCGATGCAGGTGAAAAACCGTTCAGATGCAGTGTCTGTGGCAAGGGTTTTACCCAGAAACACACTCTTTTGGTTCATCAGCGCATGCATACGGGAGAAAAGCCCTTCATCTGCACTATATGCTCCAAAGCGCTGTCCACGAAACATTCTCTGCTGGAGCACATGAACCTGCACACAGAGAAAAAGTCATTCGGTTGTGAACAGTGTGGCAAAAGCTTCAGTCAGAAGCGGCAGCTGAAAAGCCATCACCGCATTCACACAGGAAAAGCGCTGCCCGAGTGCGCGCACTGCCATCATAAGTTCATGGATGCAGCTCAGCTGAAGAAGCACCTGAGAACTCATACCGGAGAGAAGCCGTTCACGTGTGAGATCTGCGGGAAGTGCTTCACAGCCAAGAGCACACTGCAGACGCACATCAGGATACACAGAGGAGAAAAGCCGTACAACTGCAACATCTGCGATAAGACCTTCTCCGACCCCAGTGCCAGGAGGCGTCACGTGGCGTCTCACACGGGGAAAAAGCCGTTCATGTGTTCCATCTGCAGCTTGTCGTTTGCCCGAATGGACAACCTTAAAGCTCACACCAAGACTCACAACAAGGAGCGCCAACAAGGAGAAGCCGAGACCACGGGGCCTGCGCCGGTGGAGGCCGCTTCAGGGCCTGATGAGATGCACAGCATCCTCCAGCTCCAGCCGTACCAGCTTCCCGCCCAACCCGAGCAGGAGATCCAGCTGGTGGTGACCGGCGAGGTGGACGACATCAACCTGGGCCAGGATCAAAGCATCAGCATCATCGCGGCAGAAGATGCTTCCGTGGAGCAGGGCCTCACGCTTCTCACCCAGCCTTCCGGTCACGTCCAAAACCTGGCGCTGGTCACGCCTGACGGGTTAGACGCCGGCGCTCAAATCCAAACCATCAGCGTTTTAGGAAGCCAGGTGAGCGGCGAACAGCCCGAGCAAATGCACGTCATCACGCTGACCAAAGAAGCCATGGAGCAGCTGCGGGTTCATCACGGAGGTTCTCAGCAGCTGCAGGTGATCCACCAGCTGTCCGAGAGCGCTGCTGAAAATCCCAGACGGACGGGGCCCGCGGGAGGCATTCACATCAGCAGCCAGAGCGGCCAGCCTATCTCCATCAGCCAGACCAGCGAGCAGATCCCCAGCGATCAGATCCAGGGCCAGACCTTCCAGATCCAGGCTGGGACGGTCTCGTACCTCTACACCACCAGCATGAACCCGCAGAACTGAACATCCATAATGCTGACGCTTGGTCTCTTTTGTTGTGTAAATAgttgtgttttaatgttaaagctGATTTCGTTGAGAAGGAATCTGATATATGATTACACTGTGACTTTTTCATAAAGCAGAGCCATACCTAATGTTTGTTATTAAAGAGTTGCTGTTTGTAAAAAAGAACAATGGTTATGCTTATTCTCCTTTTGTTGTAAATGgttatatttttgtacttgTTAAGGAGACAAAAGACAATAAATGGTTCGTGTA

Function

symbol description
zbtb24 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be active in nucleoplasm. Used to study immunodeficiency-centromeric instability-facial anomalies syndrome. Human ortholog(s) of this gene implicated in immunodeficiency-centromeric instability-facial anomalies syndrome 2. Orthologous to human ZBTB24 (zinc finger and BTB domain containing 24).

NR:

description
PREDICTED: zinc finger and BTB domain-containing protein 24

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237344.1 True 1559 mRNA 0.52 4 22105236 22107457

Neighbor

gene id symbol gene type direction distance location
LOC122343067 NA coding upstream 304 22103318 ~ 22104932 (+)
LOC122342305 LOC107697548,LOC107574116,LOC107758214 coding upstream 263006 21841181 ~ 21842230 (+)
LOC122343035 NA coding upstream 290799 21809156 ~ 21814437 (+)
LOC122343020 LOC107667978,LOC107741456,LOC107575631,LOC107563545 coding upstream 296157 21673802 ~ 21809079 (+)
LOC122343144 NA coding upstream 362931 21741323 ~ 21742305 (+)
LOC122342312 NA coding downstream 296596 22404053 ~ 22405822 (+)
LOC122343018 LOC107705900 coding downstream 326597 22434054 ~ 22446278 (+)
LOC122343138 si:ch211-133h13.1,LOC107574515,LOC107574820 coding downstream 441160 22548617 ~ 22561763 (+)
LOC122342965 NA coding downstream 505658 22613115 ~ 22621886 (+)
LOC122343101 NA coding downstream 578245 22685702 ~ 22689679 (+)
G30130 NA non-coding upstream 293952 21749010 ~ 21811284 (+)
G30133 LOC107749047,LOC107571854,LOC107728228,LOC107669894 non-coding upstream 578225 21485712 ~ 21527011 (+)
G30132 NA non-coding upstream 582983 21479557 ~ 21522253 (+)
G30205 NA non-coding downstream 33887 22141344 ~ 22255433 (+)
G30206 NA non-coding downstream 55181 22162638 ~ 22240294 (+)
G30212 NA non-coding downstream 67498 22174955 ~ 22252519 (+)
G30226 NA non-coding downstream 142978 22250435 ~ 22251792 (+)
G30233 NA non-coding downstream 166354 22273811 ~ 22280970 (+)
LOC122342301 LOC107563870,LOC107718524,LOC107683800,LOC107564010,LOC107563545 other upstream 344055 21368643 ~ 21761181 (+)
G30115 NA other upstream 463480 21639540 ~ 21641756 (+)
G30119 NA other upstream 475116 21388193 ~ 21630120 (+)
LOC122342286 LOC107578117 other upstream 930896 21169193 ~ 21174340 (+)
G30058 NA other upstream 962405 21118562 ~ 21142831 (+)
G30218 LOC106676322,LOC106676931,LOC106676323,LOC107752219,LOC106675762,LOC106674878,LOC106676183 other downstream 124013 22231470 ~ 22231924 (+)
LOC122342310 LOC107685875,LOC107671223,LOC107749047,LOC107728228,LOC107576424 other downstream 189440 22296897 ~ 22305148 (+)
LOC122343019 LOC107705900 other downstream 554369 22661826 ~ 22682712 (+)
LOC122342317 NA other downstream 670526 22777983 ~ 22780139 (+)
G30636 LOC107575420,LOC107667978,LOC107563545,LOC107741456 other downstream 1021649 23129106 ~ 23130189 (+)

Expression


Co-expression Network