LOC122343042


Basic Information

Item Value
gene id LOC122343042
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18579651 ~ 18583442 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237345.1
ATGACGCCATAAGCCTGCGCTCGCTGTTGTGATGCGATTCTGCTGGAGGAAGATTGTTTAAACACACGGAGAAACCCCTGTTGAAGCAGAGGAGAGATCCACGGCATGTTAAAAGATGGCTTTCATTAAAGAGGAGTGTGAGGACGTGAGGATCGAAGAAGCGTTTAGAGTCAAACGTGAAGATACGGAGAAAAAAACAGACCTGATGACGCTGAAACAGGAGAATCACAAGCTTAATGAAATGGAGCAGAAATATCGGTATGAGAGACATCATGACCCTACGACTGAAGGAATAACCCAAAAGACTGAAAACACCTCCTCACAAAAAAGAGGTCAGAAGAAAGTAACCAAAAGGTGTTTCTCCTGCCAGGAGTGTGAAAAGAGTTTTGATCAATTTGCAAATCTTAAAGTCCACATgaggattcacaccggagagaaaccgttcaCCTGCCGAcagtgcggaaagagcttcAATGAAAAGGGAAACCTTAATGTCCACACAAGAGTCCACACCGGAGAAAGACctttcacctgccaacagtgtggaaaaagcTTCTCTCAAAGAGGAAACCTTAAAGTCCACATGAAAATTCACACCGGTGAGAGATCTTTTACCTGCCAGCAGTGCGGGAAGTGTTTcactgaaaaaggaaacctcaagGTCCACACGAGGACGCACACCGGAGAGAGTTCTTTCGCCTGCCAacagtgcggaaagagtttcGCTCAAAAAGGAAACCTTAAAAAGCACGTgaggattcacaccggagagaagccctacACCTGCAAAATATGTGAGAAGGGCTTCACGCGTGAGCTAGGCCTTAGTTACCACATGAACAGCCACACTGGAGATAAACCGTTCATGTGTGgtcagtgtgggaagagtttcacgCGTAAAGTGAACCTAGATACCCACATCagaatccacaccggagagacgCCCTTCGTGTGCGGTCAGTGCGGAAAGAAGTTTCGATGTAAAGAAAATCTTAACCAGCACGCGAGGGTTCACTCGAGGGAGAACTGCCTTAAGAACCGCTTAACGACTCGCGGTGCAAAGACTCCTTTCATGTGCCATCGTTGCGGAAagagttatataaataaaagaagccTTCGGGCGCACGTGAGGATCCACACTAGGAAGAGGTCTTTCGCGGGCCTTAAAATATATCGAAGAGGCCTGAAACATCATTCACAGATTCACCCTGGAGGAAAACGTTTTAATTGCAAACGGTCTCACTTACAGATACGCTTAAAAAGCCACACGGATGTGAGACTCTATCTGTGTTCCTTGTGTGGGAAGCGTTTTAAATGGCCTAGCGGTTTACTGTGGCACCGGAAAATACGTGTCTGCGTAAAATGAAGGGTACGCTCACAACACAGTTGAGCGTGGGCCAAATCTAATTTTCGACTTTTAAACGAGCGACGCCTCTACAACCATCACCCCGTTTTCCATCTCCAGTATTTATTTTCATCGAACCACTTTTTGCGTCGCCATTTTAAACTTCGAGGCGTCCTGTTTTCTCGTGTACACTTGAACTCATGTGGTCACCATCGCCTTTGGTAAACTTTCAGAGCCCGGGCGGCTGTGGTGGATGAACTCTAGCTCCTTTTGTACAGAAGCATCAATCCATTTCTCATGTTGATACTTTAgaatcaaaatatgaattaaacgTGTTGTGAAAtgcttagttttgtttttatttgattagcaAAGTACATGAAGAATAATGCTAAAACACTGGGtggaaatgtctttaaaaatccattgttttaatccatttttGTAGAGATATCAAAATTACAATTTCCACTTGAGATTT
>XM_043237346.1
CACGGAGAAACCCCTGTTGAAGCAGAGGAGAGATCCACGGCATGTTAAAAGATGGCTTTCATTAAAGAGGAGTGTGAGGACGTGAGGATCGAAGAAGCGTTTAGAGTCAAACGTGAAGATACGGAGAAAAAAACAGCACTCTGCTTAACAAGCTGATGCCGTGGATCGGATCGGAAATATTGGAGACAAAAGAAACTGTGCAGAGTGGTGAAAACCACTACCTTATTGTGTACAGGAAAGAACgACCTGATGACGCTGAAACAGGAGAATCACAAGCTTAATGAAATGGAGCAGAAATATCGGTATGAGAGACATCATGACCCTACGACTGAAGGAATAACCCAAAAGACTGAAAACACCTCCTCACAAAAAAGAGGTCAGAAGAAAGTAACCAAAAGGTGTTTCTCCTGCCAGGAGTGTGAAAAGAGTTTTGATCAATTTGCAAATCTTAAAGTCCACATgaggattcacaccggagagaaaccgttcaCCTGCCGAcagtgcggaaagagcttcAATGAAAAGGGAAACCTTAATGTCCACACAAGAGTCCACACCGGAGAAAGACctttcacctgccaacagtgtggaaaaagcTTCTCTCAAAGAGGAAACCTTAAAGTCCACATGAAAATTCACACCGGTGAGAGATCTTTTACCTGCCAGCAGTGCGGGAAGTGTTTcactgaaaaaggaaacctcaagGTCCACACGAGGACGCACACCGGAGAGAGTTCTTTCGCCTGCCAacagtgcggaaagagtttcGCTCAAAAAGGAAACCTTAAAAAGCACGTgaggattcacaccggagagaagccctacACCTGCAAAATATGTGAGAAGGGCTTCACGCGTGAGCTAGGCCTTAGTTACCACATGAACAGCCACACTGGAGATAAACCGTTCATGTGTGgtcagtgtgggaagagtttcacgCGTAAAGTGAACCTAGATACCCACATCagaatccacaccggagagacgCCCTTCGTGTGCGGTCAGTGCGGAAAGAAGTTTCGATGTAAAGAAAATCTTAACCAGCACGCGAGGGTTCACTCGAGGGAGAACTGCCTTAAGAACCGCTTAACGACTCGCGGTGCAAAGACTCCTTTCATGTGCCATCGTTGCGGAAagagttatataaataaaagaagccTTCGGGCGCACGTGAGGATCCACACTAGGAAGAGGTCTTTCGCGGGCCTTAAAATATATCGAAGAGGCCTGAAACATCATTCACAGATTCACCCTGGAGGAAAACGTTTTAATTGCAAACGGTCTCACTTACAGATACGCTTAAAAAGCCACACGGATGTGAGACTCTATCTGTGTTCCTTGTGTGGGAAGCGTTTTAAATGGCCTAGCGGTTTACTGTGGCACCGGAAAATACGTGTCTGCGTAAAATGAAGGGTACGCTCACAACACAGTTGAGCGTGGGCCAAATCTAATTTTCGACTTTTAAACGAGCGACGCCTCTACAACCATCACCCCGTTTTCCATCTCCAGTATTTATTTTCATCGAACCACTTTTTGCGTCGCCATTTTAAACTTCGAGGCGTCCTGTTTTCTCGTGTACACTTGAACTCATGTGGTCACCATCGCCTTTGGTAAACTTTCAGAGCCCGGGCGGCTGTGGTGGATGAACTCTAGCTCCTTTTGTACAGAAGCATCAATCCATTTCTCATGTTGATACTTTAgaatcaaaatatgaattaaacgTGTTGTGAAAtgcttagttttgtttttatttgattagcaAAGTACATGAAGAATAATGCTAAAACACTGGGtggaaatgtctttaaaaatccattgttttaatccatttttGTAGAGATATCAAAATTACAATTTCCACTTGAGATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237345.1 False 1826 mRNA 0.45 3 18579651 18583442
XM_043237346.1 True 1870 mRNA 0.44 3 18579651 18582951

Neighbor

gene id symbol gene type direction distance location
LOC122342233 LOC107685397,LOC107554760 coding downstream 648 18571705 ~ 18579003 (-)
LOC122343050 LOC107685395,LOC107754219,LOC107554754 coding downstream 7976 18568163 ~ 18571675 (-)
ptprr ptprr,LOC107684538,LOC107709966,LOC107690749,LOC107747646 coding downstream 34998 18526006 ~ 18544653 (-)
LOC122342232 LOC107685875,LOC107749047,LOC107728228,LOC107671223 coding downstream 102892 18445452 ~ 18476759 (-)
LOC122343150 LOC107570416,LOC107749047 coding downstream 148217 18375327 ~ 18431434 (-)
LOC122343043 LOC107724037,LOC107685393,LOC107554738 coding upstream 4221 18587663 ~ 18591387 (-)
LOC122342949 NA coding upstream 10877 18594319 ~ 18604310 (-)
scgn scgn,LOC107747999,LOC107663245,LOC107693759,LOC107757885 coding upstream 79416 18662858 ~ 18668809 (-)
LOC122342979 LOC107694482,LOC107578888 coding upstream 253176 18836618 ~ 18840716 (-)
LOC122342975 LOC107571373 coding upstream 260505 18843947 ~ 18852626 (-)
G29682 trim24,LOC107562152,LOC107690747,LOC107747644 non-coding downstream 15206 18563154 ~ 18564445 (-)
G29680 LOC107747644,LOC107709964,LOC107690747,LOC107687572,LOC107562152 non-coding downstream 20370 18556500 ~ 18559281 (-)
G29662 NA non-coding downstream 113814 18435645 ~ 18465837 (-)
G29663 NA non-coding downstream 118338 18436567 ~ 18461313 (-)
G29656 NA non-coding downstream 169756 18380990 ~ 18409895 (-)
G29720 NA non-coding upstream 128306 18711748 ~ 18712103 (-)
LOC122343197 NA non-coding upstream 154373 18737815 ~ 18740781 (-)
G29726 NA non-coding upstream 161159 18744601 ~ 18747308 (-)
G29736 NA non-coding upstream 200163 18783605 ~ 18783915 (-)
G29738 LOC107710542 non-coding upstream 202754 18786196 ~ 18786692 (-)
G29653 LOC107663329,LOC107575399,LOC107749046,LOC107758217,LOC107576964,LOC107665206,LOC107571858,LOC107671223,LOC107576424 other downstream 151308 18408560 ~ 18428343 (-)
G29473 NA other downstream 599729 17970605 ~ 17979922 (-)
LOC122342228 scgn,LOC107693759,LOC107757885,LOC107669120,LOC107714763,LOC107747999,LOC107663245 other downstream 835108 17734606 ~ 17744543 (-)
G29417 NA other downstream 843377 17735350 ~ 17736274 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other downstream 940909 17637023 ~ 17638742 (-)
LOC122343054 NA other upstream 71802 18655244 ~ 18661653 (-)
LOC122342944 LOC107581743 other upstream 109560 18693002 ~ 18735640 (-)
LOC122343082 NA other upstream 315365 18898807 ~ 18902552 (-)
LOC122343130 NA other upstream 332884 18916326 ~ 18917533 (-)
G29787 NA other upstream 348094 18931536 ~ 18931875 (-)

Expression


Co-expression Network