LOC122343045 (nots,LOC107677818,LOC107569115,LOC107725781)


Basic Information

Item Value
gene id LOC122343045
gene name nots,LOC107677818,LOC107569115,LOC107725781
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24498607 ~ 24502130 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237350.1
TGTTAAACCAACCCACGACCGGGTCGAAACGACCGAAGGCtcacagtgtttgtgtgtgtgtgtgtgtgttcctgtcaCTCTTGACCTGAGCAGCGAGGAGCAGCATGAAGACGGCTCTGGTCCTGCTGGGATATCTGAGCTGTGTTCAGAGTCTGGTGAGGGTACCACTAATTCGTTTGCCCTCGGTTCGCGGTCGGCTTCGAGCCGCTGACCAGCTGAATGAGTTCCTGCGTGAGCACCAGCCGGACGTGTTCTCCAGGCGCTACGCTCAGTGTTACCCAGCCGCACAACACTACCTTCGCCTGGGGGGCAGATCCGTAGAGAGACTCTACAACTTCATGGACGCACAGTTCTTCGGTCAGATCAGTCTGGGCAAACCAGAGCAGAATTTCACGGTGGTGTTTGATACGGGCTCCACCGATCTCTGGGTCCCTTCATCTTACTGCGTGAGCCAAGCATGCGCGATGCACCACAAGTTCAAGGCCTTTGAGTCCAGCACGTACGCCCATGACGGACGAGTCTTTGGCATCCATTACGGCTCTGGTCACCTGCTGGGAGTGATGGCCAGAGAACAACTAAAGGTGGGCTCTTTGACGGTCCAGAACCAGGTGTTCGGAGAGGCTGTGTACGAGCCTGGCTTTACCTTCGTCCTGGCTCAGTTTGACGGGGTTATGGGTCTGGGTTTCCCTCCGCTGGCAGAGGAGCTGGGCTCTCCTGTGTTTGACAGTATGATAGCGCAGGGCTTGCTGGACCAGCCCGTCTTCTCCTTCTATCTCAAGAACAACGTTTCTGGCTTCGGAGGGGAGCTGCTGTTCGGGGGTGTGGATGAAAGCCGCTTCGTTTCTCCCATCAACTGGGCTCCGGTCACTCAGAAGGGCTACTGGCAGATCAGATTAGACACTGTGAGGGTTCAGGGAGCTCTGAGTTTCTGCTATCGTAGCGCTCAAGGCTGCCAAGCCATAGTGGACACAGGAACCTCTCTGATCGGCGGCCCAGCCAGAGACATCCTGCTCCTCCAGCAGTTTATTGGAGCAACACCCAGCGCTGTCGGAGAGTACCTTCTAGACTGTGTGAGGATCAGCAGTCTTCCTGTAGTGTCTTTCCTGATCAATAATGTGGAGTATTCTCTGACTGGAGAGCAGTATGTCAGGAGGGAGGTGCTGAACAATAAGGAGATCTGCTTCAGTGGCTTTCAGTCTATAGACGTCCCGTCTCCTGCTGGCCCCGTCTGGATTCTAGGAGATGTTTTCCTCTCTCAGTTTTACAGCATCTATGACAGAGGTCATGATCGGGTGGGACTCGCTCATCTTTCAGGAAGGTCACAGATCTCTGTTTAGATCACATCTCATCTCTGAATGTGCTGCTAAATGCAGAAGAACctaatgaatgttttacattCTCTATTAAATCACTACACTTCATCA

Function

symbol description
nots Predicted to enable aspartic-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Is expressed in liver.

NR:

description
PREDICTED: cathepsin E-A-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004190 aspartic-type endopeptidase activity molecular_function

KEGG:

id description
K01382 CTSE; cathepsin E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237350.1 True 1424 mRNA 0.53 9 24498607 24502130

Neighbor

gene id symbol gene type direction distance location
cct2 cct2 coding upstream 1027 24493077 ~ 24497580 (+)
terfa NA coding upstream 13254 24480242 ~ 24485353 (+)
LOC122343091 NA coding upstream 21824 24472007 ~ 24476783 (+)
ttll1 ttll1,LOC102779306 coding upstream 45399 24449021 ~ 24453208 (+)
LOC122343053 NA coding upstream 64781 24427508 ~ 24433826 (+)
LOC122343032 NA coding downstream 66864 24568994 ~ 24574432 (+)
LOC122343010 NA coding downstream 75033 24577163 ~ 24581794 (+)
LOC122342982 NA coding downstream 93723 24595853 ~ 24605817 (+)
LOC122342946 NA coding downstream 104907 24607037 ~ 24619391 (+)
LOC122343105 NA coding downstream 146837 24648967 ~ 24653215 (+)
G30812 NA non-coding upstream 11720 24456022 ~ 24486887 (+)
LOC122343172 NA non-coding upstream 79039 24417843 ~ 24419568 (+)
G30819 NA non-coding upstream 184319 24310339 ~ 24314288 (+)
G30754 NA non-coding upstream 488716 24003642 ~ 24009891 (+)
G30751 LOC107671223,LOC107569100,LOC107575457,LOC107747635,LOC107679413,LOC107566978,LOC107670352 non-coding upstream 497043 23978432 ~ 24001564 (+)
G30877 NA non-coding downstream 212567 24714697 ~ 24714998 (+)
G31223 NA non-coding downstream 486737 24988867 ~ 24989274 (+)
G31226 NA non-coding downstream 812093 25314223 ~ 25314596 (+)
G31228 NA non-coding downstream 813049 25315179 ~ 25315553 (+)
G31380 NA non-coding downstream 1285250 25787380 ~ 25787901 (+)
LOC122343023 LOC107568558,LOC107685877,LOC107725785,LOC107728057 other upstream 27157 24465454 ~ 24471450 (+)
LOC122343028 pacsin2,LOC107725788,LOC107569113 other upstream 32207 24454270 ~ 24466400 (+)
LOC122342990 NA other upstream 357161 24133050 ~ 24141446 (+)
LOC122342976 usp15,LOC107685889 other upstream 367120 24117289 ~ 24131487 (+)
LOC122342321 LOC107741609,LOC107575420,LOC107710255 other upstream 1330600 23163695 ~ 23168007 (+)
LOC122343159 NA other downstream 134222 24636352 ~ 24638654 (+)
LOC122343125 NA other downstream 136959 24639089 ~ 24646601 (+)
LOC122343086 NA other downstream 170761 24672891 ~ 24674412 (+)
G30882 NA other downstream 219294 24721424 ~ 24728447 (+)
LOC122342408 NA other downstream 241718 24743848 ~ 24767552 (+)

Expression


Co-expression Network