LOC122343050 (LOC107685395,LOC107754219,LOC107554754)


Basic Information

Item Value
gene id LOC122343050
gene name LOC107685395,LOC107754219,LOC107554754
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18568163 ~ 18571675 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237356.1
tttagcGTTGTGACGTCACAAGGCCGCGCCGTTCTCCTGCGTCTGTTGCGATTCAAAGAAGAAAGCTGAGATCCAAATGACACGCTTTTATAAAGATggcgtttattaaagaggagagtcaAGACGTGAAGATTGAAGAAACGTTCAGAGTGCAACAAGAAGATGCCGAGGAACGAACAGATCTGGTGGTACTCAAAGAAGAGAGTCAAGAACTGGATCGAAAGGAAGTTAAAAAGCAGTATGAGAAATATTGTGATTTAACGACTGGAGAAAAATCTTTATGTTGCTCACAGGCTGAAAAGACGACTCGGAAAAGAGCTCGGTTGACTACGGTTAGTTATAATTTCACCTGCCAGCAGTGTGGGAAAGGTTTTAATCATCACCGAAACCTTACAGTCCACACgagaattcacaccggagagaagccttataCCTGCCAGCACTGCGGGATGAGTTTCACTCAAAAAGGAAGTCTTAAAGTCCACATtagagttcacaccggagagtGTCCCTTCACCTGCCGGcagtgtggaaaaagtttcGCTAGAAAGGGAAACCTGAAAGTCCACATGCGAATACACACCAGAGAAAGCCCGTTTGCCTGTGAACAGTGTGGAAAATGTTTCACTCAAAAAGGAAGCCTCAAAGTCCACACgagaattcacaccggagagacgCCCTTTCCGTGCCAgcagtgcggaaagagttttAAACACAAAGGAGCCCTCAACGACCACATGAAAACTCACTCCAGAGAGAAACCGTTCGCTTGCGGTCAGTGTGGAAAGACCTTCAGATTTACAGAAGCCCTTGATAAACACACGAGGATTCActcaagagagagagattcgATGTGTCATCGCTGCGGAAGGGTTTTCGCGGACGAGAAAcgtttgaaggatcatgtaaaaAATCACATCGGAGAACAACCGTTTATGTGCCACGAGTGCGGAAAGAACTGCGAAAACAAAGGGAACCTTGAGGCTCATGGGAGAGCGCACACCGGAGAGAGGCCTTTCAGCTGCCTTCAGTGCGGAAAGTGCTTCACGCTAAAAGGAAACCTTAACATTCACCTGAGgcttcacaccggagagaagccgttcgCTTGCCTTCAGTGCGGGAAAGGTTTCGCGCTCAAAGGGAACCTCGAGGTTCACGCGAGGCTTCACACGGGGGAGAGGCCTTACAAATGTCTTCGCTGTGAAAAGAGTTTCACAAATAACAGAGACCTGAAAGGTCATTCCCAAACTCATTCTGGGAAAAACGCTGCAGCACGAAAAGAGTAACAAAAAGTAGATACTTGTAGACACGCATAAAACGTAATTATTCCATGTTCATCCTTCATGTCTTTATACTTTGACTTAGATTAAAGTGTTTACTTGGTTTTGCTCCCCTCATCAGGAATCGGGGCCTCCCCAACCACTGGTCGCCAAAGTATTTCTGAAAGCAatgacattgtttttttgtttccttgctCTGAGGTAGTAATATCTTTTCtatgaaaatgtttaagtgGCTTCTCCCACTTTTTATCAGAAAGTGACAATTTTGTTACTTGTTAGATGGAAACGGTGCTTAGTCACATGTTTTATGCGATACTCCAATTTTGCACCAAAGTTAAGTTGGCGATTTTCAATGAAAACCCAACTATTCCAGTTCCAGTGTCTGATTTCTGTAGGTTACATTAGAGCAGGGCTCCTCAAATCTGGCCCAGTCTGCAGTCTACCTGAGCATGTTAATAAATGTCTTCAGGATCGTAAGAAAATCACGGTTCGTTGAGTCCAATCTGGATTGGAGAGAAACTCTACAACATATTCGTCTTGTTTAGCCAGACATGGATTCCATGGTGGAGTTAGCTGGCCGAGGCCTGACCGTGACAACCAATCACTGTTGCCAGAAAACTctctgatatttttttaaagattctatGACCTGAACTTTAGACTAGCACCGCACTGGTCCTCCAGTGCAAACCCTACATTAGAGAATTCCTCCTTCTGGGAGTCTAATCCAGCAATCATGTTTTGATCATTTGCCAAGAAGAATGATGCGGCTCGGTGACAAACCTTCAGAACAACACTGGTGAAGGTTTGAGGAACGCAGTAGGAGTGATATatgaaatgattttgttttttaattacatgCTTGCATTTAGGGATGCAGTTGCCATCAGTGagaaatctgttttaaatagcTCCAATAATTACCTGCATTGATAATTTCTTTAAACTAAACCAAATCTATATAATTCAACAACCATGTCatttatgtatgaaaataaTCGTGCTGTCTGTTATATTAAGGCATCATGAAATGGATACTCAAGATGTTCTTGAGGGCTATGCAAATGCAATAACACATGAATAATTCTTTTCTACTCTTGAAATCGGGAGAATCGTGAAAACGCGATTGTCCGATCGACATGACTCTTAACACGTTTCATGCTTGTAAGATTCACCGAACCTCAgacacttttaaaaagatttagattttgaa

Function

NR:

description
PREDICTED: gastrula zinc finger protein XlCGF57.1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237356.1 True 2496 mRNA 0.43 3 18568163 18571675

Neighbor

gene id symbol gene type direction distance location
ptprr ptprr,LOC107684538,LOC107709966,LOC107690749,LOC107747646 coding downstream 23510 18526006 ~ 18544653 (-)
LOC122342232 LOC107685875,LOC107749047,LOC107728228,LOC107671223 coding downstream 91404 18445452 ~ 18476759 (-)
LOC122343150 LOC107570416,LOC107749047 coding downstream 136729 18375327 ~ 18431434 (-)
wbp1 LOC107670394,LOC107728527,LOC106563291 coding downstream 349635 18213547 ~ 18218528 (-)
mtfp1 mtfp1,LOC107565646,LOC107566856 coding downstream 366032 18199050 ~ 18202131 (-)
LOC122342233 LOC107685397,LOC107554760 coding upstream 30 18571705 ~ 18579003 (-)
LOC122343042 NA coding upstream 7976 18579651 ~ 18583442 (-)
LOC122343043 LOC107724037,LOC107685393,LOC107554738 coding upstream 15988 18587663 ~ 18591387 (-)
LOC122342949 NA coding upstream 22644 18594319 ~ 18604310 (-)
scgn scgn,LOC107747999,LOC107663245,LOC107693759,LOC107757885 coding upstream 91183 18662858 ~ 18668809 (-)
G29682 trim24,LOC107562152,LOC107690747,LOC107747644 non-coding downstream 3718 18563154 ~ 18564445 (-)
G29680 LOC107747644,LOC107709964,LOC107690747,LOC107687572,LOC107562152 non-coding downstream 8882 18556500 ~ 18559281 (-)
G29662 NA non-coding downstream 102326 18435645 ~ 18465837 (-)
G29663 NA non-coding downstream 106850 18436567 ~ 18461313 (-)
G29656 NA non-coding downstream 158268 18380990 ~ 18409895 (-)
G29720 NA non-coding upstream 140073 18711748 ~ 18712103 (-)
LOC122343197 NA non-coding upstream 166140 18737815 ~ 18740781 (-)
G29726 NA non-coding upstream 172926 18744601 ~ 18747308 (-)
G29736 NA non-coding upstream 211930 18783605 ~ 18783915 (-)
G29738 LOC107710542 non-coding upstream 214521 18786196 ~ 18786692 (-)
G29653 LOC107663329,LOC107575399,LOC107749046,LOC107758217,LOC107576964,LOC107665206,LOC107571858,LOC107671223,LOC107576424 other downstream 139820 18408560 ~ 18428343 (-)
G29473 NA other downstream 588241 17970605 ~ 17979922 (-)
LOC122342228 scgn,LOC107693759,LOC107757885,LOC107669120,LOC107714763,LOC107747999,LOC107663245 other downstream 823620 17734606 ~ 17744543 (-)
G29417 NA other downstream 831889 17735350 ~ 17736274 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other downstream 929421 17637023 ~ 17638742 (-)
LOC122343054 NA other upstream 83569 18655244 ~ 18661653 (-)
LOC122342944 LOC107581743 other upstream 121327 18693002 ~ 18735640 (-)
LOC122343082 NA other upstream 327132 18898807 ~ 18902552 (-)
LOC122343130 NA other upstream 344651 18916326 ~ 18917533 (-)
G29787 NA other upstream 359861 18931536 ~ 18931875 (-)

Expression


Co-expression Network