LOC122343060 (LOC107677814)


Basic Information

Item Value
gene id LOC122343060
gene name LOC107677814
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22495286 ~ 22499529 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237366.1
gggCTTTTGTTTAGAGTAACAGACCAAAGATGTGATGCTGAATGAGGGATGAGAGCAGATATAATACACAATCACACAGTTTGAAGCTGCAGACAGACACATCAGTCTCGGACAATctctgaaaaatGGACAAAGCTctactttttcttcttcttctaattGCTCTCTGCTCCGTATCTGAATGTGTTCGGCATCAGTATCGCTTTATAAATGAGAAGAAGACCTGGACTGAAGCTCAGAGATACTGCAGAGAGAGATACACAGATCTGGCCACCGTTGACAACATGAATGACTTAAATGAGCTCATAATGAGTGTGAGTGATCAAAGTGTTCAGTTGGTCTGGATCGGGCTGCAGAATACGGGTCGTGAAGAATGGCAGTGGTCTTCAGGAGAACCTGCGCTCTATCTGAACTGGACACCTGGCCAACCAGAAGGTAGAGATGAGTGTGCTATTATGGCAAATGGAACTTTTGAGGATTTGCCATGTAGTCTTACCTGGCCTTTTATCTGCAACAACATGAGCACAGGACTCGTCTTTGTCAATCAGGCGATGAATTGGAGTGACGCTCAGAGTTACTGCAGACAGAATCACACGGATCTGGTCAGTGTGAGGAACCAGAATGAGAATCAACAGGTTCAGAAGTTCATCAGTGATAGTCTCTTACCTGGATCACGGATCTGGATCGGTCTGTTCAGAGTCAGAGACTCATGGCAGTGGTCAGATCAGAGCGACTCCTCATTCAGATACTGGAAGTCTGATCAACCTAATGGGTTTAGAAATGGTGAAAATTGTACAATGAGTCAATCGAATGCTGAAAGAAAATGGCATGACTGCCCTTGCACTGATCAATATCCTTTTGTGTGTTATGAAGACGCTGAACTGATTCTGATCAGAGAGAATCTGACGTGGGCCGAAGCTCTGAGATACTGCAGACAGAATCACGTGGATCTGGTCTCAGTTCATTCAGAAGAGATGCAGCATCGTGTGAAGAACGTGGTTAAACGGGCGTCTACTGCAGCGGTGTGGATGGGTTTACACAACTACTGCGTCATGAACATGTGGCTCTGGCTGAGTGGAGAGATCGTGTGTTATCAGAAATGGGCTCCAGGGAACGGAACGACGCAAGAAAACTGCAAACTCGAGAAGAGAAAAGGAGCCGTTCAGTCTGGAGGAGATCAGCTCTGGATCAGCCTTCCTGAATCTCACAAACTCAACTTCATCTGCAGCAGAAATTAAGAGCAGAAAAGCATACTACTACCACGTGTGCCGCAGGACCATGGCATTAACTGCAAGTCAGTCCCATGGTAAAGTTGTTCACAAAACTGCAATCAGGTAGCGCAAAAGAGTTTGCAAACTACCCGAAGATCTAGTAACGAAATAGAACAACAAgtttaaaatacaacattataacttaacattataaaatacaacattataacttaaaaatgattagaaaattattttgaaatgaatttcTATAAAGTTAATTTCAAAACGTAATAGTcagaataaaacaattacatgtACATAAAAAGCTCTTAATGCATGTTATGGGTCATTATTTCCTTATGTtgtattaatgattattattttatgtcacAAATTATGAAAGGcttgaaaattacatttaataattggCTTATGTATTTCAGCAGGTCACAAATACTTATtggttatttagtttttttttttaacacatttgttCCCATATCTAAAGCAGATgacaattatgcaaattatgaaAACTTATGTCCCTAAATTTAGAAAACCTTTATTGTTTCTTTGCATTAATTAAACcatgttatgttttaaatataattgttttataatacaaaattaatgaTAATATGGTTTAGCATACAAAgtttaggcaaaaaaaaaaagaattagacacaaaacaaattaaaaattttgtcggtttttagaaaaatattacaacaatcATTTCCAAAGGCAAATATCTGGTATAGACCTGCACAGGCCTCAAACCTAGGCCCTATAACCAGCCCTTGTTTTTTTTGACCATGTAGATAGCAGCAGTCAGTTGATTTGATAACGTTTGATTAATTTAGCCATCTTAAATCATCTAGACTTGCTTAAACCTCTGGGGCTTGAAGGTGTTTTGGGATTTAATTCTGTGTAAAGCTTAACCACTGTCACGAACTGAGAGTCTAGCTATGGAGGAATACATTTCAGAGGCTCTCAAATCTGGTTTCATCCAACCTTCTACTTACCCAGCCGCCGTGGGTTTCTTCTTCGTGGAAAAGAAGGACGGAGGATTACGACTCTGTATCGGTTATCGTAGACTCAACAATGCCACTAGTGATAATGTTTTCATCGCATTTTCTGGTACAAAATTAGCTGCTGCAGATTAGGTTTAAAGGCCAAAAACCTTTCAGCTCGCTCGTCATGTTCATAATGAATCTATTGTGACTTCAAGtgaagattattttaattaatattactatttcctatgatgcaaagctgattttttttagccTCATTTCAGTTTTCACTGTCATATGATCATTCTAATGCTGATCTGTAACAGATACCATGAAACGGATACTCTAGTGCTTGAACTCTACTTACTTTTACATATGAAAGGAAAAATATACAGGTTCCTCATATGATTTTCAGATGGGAAAGTGGGGATTTATggtgaaaatctaaataaatattgatatctCACTAATGTATTATGTTGCTTCTGAAGACAAGGatttggacacagaaaaacatgatCTTCAGAGAGAATATGATATCCAAATCACTTTGGATTAAAATGGTGTTCGTGTCA

Function

NR:

description
PREDICTED: C-type mannose receptor 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237366.1 True 2802 mRNA 0.38 5 22495286 22499529

Neighbor

gene id symbol gene type direction distance location
LOC122343006 NA coding downstream 63663 22429074 ~ 22431623 (-)
LOC122342948 LOC107575457,LOC107741609 coding downstream 99686 22385863 ~ 22395600 (-)
LOC122342947 NA coding downstream 160493 22325510 ~ 22334793 (-)
LOC122343126 si:ch211-232d10.1,LOC107747635,LOC107569099,LOC107698614,LOC107574820 coding downstream 175189 22315908 ~ 22320097 (-)
LOC122343076 LOC107718513,LOC107692125 coding downstream 256279 22235757 ~ 22239007 (-)
LOC122342313 LOC107703281,LOC107657504,LOC107693510,LOC107570418 coding upstream 68695 22568224 ~ 22577494 (-)
LOC122342314 LOC107575554,LOC107666720 coding upstream 78817 22578346 ~ 22585463 (-)
LOC122343061 LOC107677814 coding upstream 88194 22587723 ~ 22593908 (-)
LOC122342315 NA coding upstream 101017 22600546 ~ 22608778 (-)
LOC122342316 NA coding upstream 137892 22637421 ~ 22643780 (-)
G30520 NA non-coding downstream 7117 22487420 ~ 22488169 (-)
G30518 NA non-coding downstream 8167 22486775 ~ 22487119 (-)
G30506 NA non-coding downstream 66529 22425592 ~ 22428757 (-)
G30499 NA non-coding downstream 73333 22359217 ~ 22421953 (-)
LOC122343195 NA non-coding downstream 97263 22396518 ~ 22398023 (-)
G30525 NA non-coding upstream 633 22500162 ~ 22501174 (-)
G30547 NA non-coding upstream 70106 22569635 ~ 22570058 (-)
G30920 NA non-coding upstream 271326 22770855 ~ 22772854 (-)
G30926 NA non-coding upstream 288017 22787546 ~ 22789302 (-)
G30938 NA non-coding upstream 358730 22858259 ~ 22861620 (-)
G30450 NA other downstream 250126 22128454 ~ 22245160 (-)
G30457 NA other downstream 278816 22216035 ~ 22216470 (-)
LOC122343153 NA other downstream 711695 21387853 ~ 21783591 (-)
LOC122342328 LOC107671223,LOC107685875,LOC107728228,LOC107749047,LOC107553362,LOC107574018,LOC107569032,LOC107575215 other upstream 917362 23416891 ~ 23437015 (-)
G31017 NA other upstream 978996 23478525 ~ 23546369 (-)
G31050 NA other upstream 1245957 23745486 ~ 23771768 (-)
G31091 kdm5a,LOC107710764,LOC107685890,LOC107693604 other upstream 1610695 24110224 ~ 24110673 (-)
G31134 NA other upstream 1804567 24304096 ~ 24497596 (-)

Expression


Co-expression Network