lman2la (lman2l,lman2la,LOC107660366,LOC107565653,LOC102299173)


Basic Information

Item Value
gene id lman2la
gene name lman2l,lman2la,LOC107660366,LOC107565653,LOC102299173
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18202735 ~ 18210893 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237386.1
GGGTGCAAGCATTGACCGACAGATGGCCGCGAGCGTGAATTCAGTGGACGCGTTTGAAAAGCTTTGAATTAAATCATGATTTCTGGGTCATCGTTGATTTTATTTGCAGCTTTCAGTGTTAGTTTATGTGATGATGGTCATGAAATGGAAGAGTTTTTAAAGAGAGAGTATTCACTGTCCAAGCCTTACCAGGgtgtcgGTGTGTTAGGGTCGTCTCACTGGGAGCTGATGGGAGATGCTCTGGTCACCACTGATTATGTGCGTCTCACTCCAGACCAGCAGAGTAAACAGGGAGCTATATGGAGCCGAATAccgTGTCACCTGAGGGACTGGGAGCTGCAGGTTCATTTTAAGGTTCACGGTCAGGGGAAGAAGAATCTGAACGGAGACGGTCTGGCCGTGTGGTACACTCAGGAGCGCATGCAGAAAGGTCCAGTGTTTGGAAACCGGGATTTCTTCACTGGACTCGGTGTGTTTGTGGACACGTACCCTAATGAGGAGAAACTGCTGGAGgcgcAGAGGAAGAGGTACACCCCCCGCACACAGAGGATCTTCCCGTATGTTCTGGCGATGGTGGGCAACGGCAGCATCAGCTACGATCACGAGCGTGACGGACGACCCACCGAACTCAGCGGCTGTAACGCAATGATACGAAACCTGAAACACGACAGCTTCCTGTTCATCAGATACGTGCGGCGCAGACTCACAatCATGCTGGATATTGACGGTCAGCAGGAGTGGAGGGATTGTCTGGATGTTCCTGGAGTTCGTCTGCCGCAGGGCTATTACTTTGGTGCTTCGGCCGTCACTGGAGACCTGTCAGataaCCACGACCTGATCTCCATGAAGTTGTACCAACTGACGGTCCTGCGCAGCAAGCAGGAGGACGAGGAGCAGCAGGAGGTTCTGGTTCCCAGCGTAGACAACATAGAGCTGCTGAGACctctcACGGACGTGGAGGGCATGAGCAGCGTGGCAGTCTTCTTCAGCGTTCTCTTCTCGATGCTGGGGGTGTTTCTGCTCCTGGTCGTGGGGCTGGTTCTGTACGGACACTGGAATGAAAGCAGGAGGAAGCGCTTCTACTGACTTCCTGTCTAGAGTTCACTGTCACTTCCTGTTCTCTGAGTGAAGGCTGTGATCCGCTGAAGAT

Function

symbol description
lman2la Acts upstream of or within mechanosensory lateral line system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in neuromast and neuromast support cell. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human LMAN2L (lectin, mannose binding 2 like).
lman2l Predicted to enable mannose binding activity. Involved in protein transport. Located in Golgi apparatus and endoplasmic reticulum membrane. Implicated in autosomal recessive non-syndromic intellectual disability.

NR:

description
VIP36-like protein isoform X2

GO:

id name namespace
GO:0048881 mechanosensory lateral line system development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K10083 LMAN2L, VIPL; lectin, mannose-binding 2-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237386.1 True 1150 mRNA 0.53 9 18202735 18210893

Neighbor

gene id symbol gene type direction distance location
ddx54 ddx54,LOC107729212,LOC107745378,LOC107674901,LOC107597958,LOC107566861,LOC102784149 coding upstream 205077 17984993 ~ 17997658 (+)
abl1 abl1,LOC107670387,LOC107597931,LOC107674916,LOC107566858 coding upstream 239216 17939684 ~ 17963519 (+)
exosc2 exosc2,exos2 coding upstream 264819 17933305 ~ 17937916 (+)
fabp1a fabp1,fabp1a,LOC107745323,LOC107597935 coding upstream 287141 17912439 ~ 17915594 (+)
oxt oxt,LOC107729605,LOC107745630,LOC107597959,LOC107674922,LOC107566857,LOC107670390 coding upstream 299818 17901441 ~ 17902917 (+)
LOC122343129 LOC107565648,LOC107660365,LOC106563294,LOC108274068,LOC107733731 coding downstream 7823 18218716 ~ 18222320 (+)
rab21 rab21,zgc:154045,LOC107687573,LOC107690748,LOC106609839 coding downstream 336638 18547531 ~ 18554389 (+)
trim24 trim24,LOC107709964,LOC107687572,LOC107747644,LOC107562152,LOC107690747 coding downstream 345676 18556569 ~ 18565366 (+)
LOC122343002 NA coding downstream 408658 18619551 ~ 18627271 (+)
LOC122343000 LOC107554745,LOC107700104,LOC107746770 coding downstream 416532 18627425 ~ 18632437 (+)
G29484 tbx3a,LOC107742157,LOC107597930,LOC107687999,LOC107728866 non-coding upstream 141819 18059335 ~ 18060916 (+)
G29476 NA non-coding upstream 200256 17999597 ~ 18002479 (+)
G29320 NA non-coding upstream 236984 17884328 ~ 17965751 (+)
G29364 NA non-coding upstream 270331 17931884 ~ 17932404 (+)
G29318 LOC107745315,LOC107597934 non-coding upstream 279846 17916054 ~ 17922889 (+)
G29544 NA non-coding downstream 224750 18435643 ~ 18460595 (+)
G29548 NA non-coding downstream 230738 18441631 ~ 18465837 (+)
LOC122343196 NA non-coding downstream 380554 18591447 ~ 18594116 (+)
G29591 NA non-coding downstream 389535 18600428 ~ 18603316 (+)
G29600 NA non-coding downstream 451967 18662860 ~ 18665083 (+)
atp5mj NA other upstream 1161905 17038419 ~ 17040830 (+)
G28982 NA other upstream 1728354 16473898 ~ 16474381 (+)
G28899 NA other upstream 2217009 15985219 ~ 15985726 (+)
G28891 NA other upstream 2360880 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 2547457 15565499 ~ 15655278 (+)
G29526 NA other downstream 89522 18300415 ~ 18301189 (+)
G29545 NA other downstream 225567 18436460 ~ 18461317 (+)
G29642 NA other downstream 672286 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 1079327 19290220 ~ 19342911 (+)
G29835 NA other downstream 1520369 19731262 ~ 19786128 (+)

Expression


Co-expression Network