LOC122343073


Basic Information

Item Value
gene id LOC122343073
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23256365 ~ 23259319 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237389.1
GTGACGTCACCCGGCTGCGCCCGCATCTGTTGAAGACAGTTTTGCGTTTTGAAGCGTTTAAAGCGCCGTTTTCGCAATGAATTCGTAGCTCGACATCCACGTTTAGCTCCATCGATCATGAATCGGTGTATCGGTAAAGATGAAGTCCGGTAGAGAGGATGGAGAAACAGAGCAAACTTTTCTCAGGGGTTCACAGCGAggacaacaaacacaaacaagtaCGAGATGTTACCTGAAAGCATGAGATGTTACCTGAGCTAACTCTAAATAGTGAAGTGGAAACAATGTGTCCAGATCCTCGCGACAAACTCTCATAAAGATGGCTTTTgttaaagaggagagagaagagctGAAGATTGAAGAAGCGTTCAGAGTCAAACATGAAGATACTGAGGAAGAAACAGAGCTGATGTCTCTGAAAGAGGAGAGACAAGAACCCAATGAAATGAACGAGAAGGATCAATGTGTGGAACGTAGTCATTTTACGACTGAAAAAACATCTTCACAAAAAACACCTAAGAAAGCCAAACCTAACGCCTGCCATCAGTGCGGAAAGAGATTTCTGCATAAACAGTCGCTAAAGGACCACGCgagagttcacactggagagaaacctttcaCCTGCCttcagtgcggaaagagtttcagGTACAAAGGGAGCCTTACGAACCATATGAGGactcacaccggagagagaccTCACACGTGTCAGcagtgcggaaagagcttcGGTCAAAAGATGCACCTCGTGTgccacatgagagttcacaccggagagaaaccgtacaTCTGCCCACAGTGCGGAAACGGCTTCAGTCAGAACTGGACCTTTATAAAacacatgagagttcacaccggagacAAACCGTTCACGTGCggtcagtgtggaaagagttttgcGCTGAAAGAAACTCTGAACTCTCACGTGAACGGTCACTTCAAAGAGAACAGCTATGTTTGTCAgaagtgtggaaagagtttcggTCATAAAGCCAGCTTCAAGACtcacatgagagttcacacgGGAGAGAAACCATACGCGTGCTCTCAGTGCGAGAAGAGCTTCGGATACAAACAGTCCCTCGATTCCCACATgaggattcacaccggagagaaaccttacGTGTGTCAGGAGTGCGGAAAGGGCTTCTCTCGGAAAGGAGACCTCAAGCTTCACGCGGttgttcacaccggagagaagccgttcgCATGCGATCGCTGTGGAAAGAGTTTCGGACGCAAAGTGAACCTCAATCAGCACGTGAAGATGCACTTCTGGAAAGATGTAGTTTTAGAGTTCTAGTATTCAATGCTTTCTGTATGGAATAATTTTGAAAGATAGGAAACCCCTTATGCATCATGTTAACACTGTTTACCCAAAAAGCCAATCATGTAAATACGTAAGTCGGTCTTGGTGTTATTTACAGTGTTATATATGCTCCaatataaatttacaaaaatggcACTGC
>XM_043237390.1
GTGACGTCACCCGGCTGCGCCCGCATCTGTTGAAGACAGTTTTGCGTTTTGAAGCGTTTAAAGCGCCGTTTTCGCAATGAATTCGTAGCTCGACATCCACGTTTAGCTCCATCGATCATGAATCGGTGTATCGGTAAAGATGAAGTCCGGTAGAGAGGATGGAGAAACAGAGCAAACTTTTCTCAGGGGTTCACAGCGAggacaacaaacacaaacaagtaCGAGATGTTACCTGAAAGCATGAGATGTTACCTGAGCTAACTCTAAATAGTGAAGTGGAAACAATGTGTCCAGATCCTCGCGACAAACTCTCATAAAGATGGCTTTTgttaaagaggagagagaagagctGAAGATTGAAGAAGCGTTCAGAGTCAAACATGAAGATACTGAGGAAGAAACAGGTACCGTTCCCGCTTGTCTGCCCATCAGTTTGATTTTCTGTCTGTCCGAGGAGCTGCTTTCACCGGAGAAGGCCGTCATCTGAGACATGAAGGGGGTGCCCTGATTGTTCAGTATCTCTGACCTGACAAAACGGCTTAACTTTGGCCCGGCCAGTGGAAATAATCACGGATGCAATCTTTAGTGTTTGTGGCCCAGAGATGTCCGGCTAAGGCATGGATCTGAGTTGACTGCAAAACCGCTTCTGTCTCTGGAATGAGTGTCATCCTCTCCCTTGGAGATGGGGTGAGGAGCTCAGAGTAGACCGCTGCTCCTCCGCATCcagagagaggccagctgaggtggctctgggaagacctaggacatgcCGGAAAGCCAACAATTCactaaaaacgtttttttattgGACGTTTGTTGAATAGCTGATGTCTCTGAAAGAGGAGAGACAAGAACCCAATGAAATGAACGAGAAGGATCAATGTGTGGAACGTAGTCATTTTACGACTGAAAAAACATCTTCACAAAAAACACCTAAGAAAGCCAAACCTAACGCCTGCCATCAGTGCGGAAAGAGATTTCTGCATAAACAGTCGCTAAAGGACCACGCgagagttcacactggagagaaacctttcaCCTGCCttcagtgcggaaagagtttcagGTACAAAGGGAGCCTTACGAACCATATGAGGactcacaccggagagagaccTCACACGTGTCAGcagtgcggaaagagcttcGGTCAAAAGATGCACCTCGTGTgccacatgagagttcacaccggagagaaaccgtacaTCTGCCCACAGTGCGGAAACGGCTTCAGTCAGAACTGGACCTTTATAAAacacatgagagttcacaccggagacAAACCGTTCACGTGCggtcagtgtggaaagagttttgcGCTGAAAGAAACTCTGAACTCTCACGTGAACGGTCACTTCAAAGAGAACAGCTATGTTTGTCAgaagtgtggaaagagtttcggTCATAAAGCCAGCTTCAAGACtcacatgagagttcacacgGGAGAGAAACCATACGCGTGCTCTCAGTGCGAGAAGAGCTTCGGATACAAACAGTCCCTCGATTCCCACATgaggattcacaccggagagaaaccttacGTGTGTCAGGAGTGCGGAAAGGGCTTCTCTCGGAAAGGAGACCTCAAGCTTCACGCGGttgttcacaccggagagaagccgttcgCATGCGATCGCTGTGGAAAGAGTTTCGGACGCAAAGTGAACCTCAATCAGCACGTGAAGATGCACTTCTGGAAAGATGTAGTTTTAGAGTTCTAGTATTCAATGCTTTCTGTATGGAATAATTTTGAAAGATAGGAAACCCCTTATGCATCATGTTAACACTGTTTACCCAAAAAGCCAATCATGTAAATACGTAAGTCGGTCTTGGTGTTATTTACAGTGTTATATATGCTCCaatataaatttacaaaaatggcACTGC

Function

GO:

id name namespace
GO:0090575 RNA polymerase II transcription regulator complex cellular_component
GO:0000439 transcription factor TFIIH core complex cellular_component
GO:0005667 transcription regulator complex cellular_component

KEGG:

id description
ko03022 Basal transcription factors

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237389.1 False 1469 mRNA 0.46 2 23256365 23259319
XM_043237390.1 True 1887 mRNA 0.47 3 23256365 23259319

Neighbor

gene id symbol gene type direction distance location
LOC122342325 LOC107741456 coding downstream 5751 23240075 ~ 23250614 (-)
LOC122342324 NA coding downstream 19285 23230042 ~ 23237080 (-)
LOC122342323 NA coding downstream 37192 23201470 ~ 23219173 (-)
LOC122342322 NA coding downstream 58750 23196547 ~ 23197615 (-)
LOC122343148 NA coding downstream 400233 22840016 ~ 22856132 (-)
LOC122343107 LOC107566978,LOC107575457,LOC107561645,LOC107655025 coding upstream 466433 23725752 ~ 23727918 (-)
LOC122343128 LOC107728228,LOC107569032,LOC107685875,LOC107705465,LOC107574018 coding upstream 557530 23816849 ~ 23929534 (-)
LOC122342994 LOC107749047,LOC107685875,LOC107728228,LOC107570416,LOC107671223 coding upstream 948336 24207655 ~ 24220008 (-)
LOC122343156 LOC107674852,LOC105007321,LOC107551422,LOC103361099,LOC107732279,LOC107677819,LOC107725800 coding upstream 1006030 24265349 ~ 24266607 (-)
LOC122342338 NA coding upstream 1053523 24312842 ~ 24319112 (-)
G30967 LOC107561645 non-coding downstream 202745 23051748 ~ 23053620 (-)
G30938 NA non-coding downstream 394745 22858259 ~ 22861620 (-)
G30926 NA non-coding downstream 467063 22787546 ~ 22789302 (-)
G30920 NA non-coding downstream 483511 22770855 ~ 22772854 (-)
G30547 NA non-coding downstream 686307 22569635 ~ 22570058 (-)
G30992 NA non-coding upstream 4413 23263732 ~ 23264216 (-)
G30993 NA non-coding upstream 6439 23265758 ~ 23266130 (-)
G30994 NA non-coding upstream 7306 23266625 ~ 23266858 (-)
G31012 NA non-coding upstream 132360 23391679 ~ 23397273 (-)
LOC122343160 NA non-coding upstream 194958 23454277 ~ 23455816 (-)
G30450 NA other downstream 1011205 22128454 ~ 22245160 (-)
G30457 NA other downstream 1039895 22216035 ~ 22216470 (-)
LOC122343153 NA other downstream 1472774 21387853 ~ 21783591 (-)
LOC122342328 LOC107671223,LOC107685875,LOC107728228,LOC107749047,LOC107553362,LOC107574018,LOC107569032,LOC107575215 other upstream 157572 23416891 ~ 23437015 (-)
G31017 NA other upstream 219206 23478525 ~ 23546369 (-)
G31050 NA other upstream 486167 23745486 ~ 23771768 (-)
G31091 kdm5a,LOC107710764,LOC107685890,LOC107693604 other upstream 850905 24110224 ~ 24110673 (-)
G31134 NA other upstream 1044777 24304096 ~ 24497596 (-)

Expression


Co-expression Network