LOC122343085 (LOC107561645,LOC107566978,LOC107748257,LOC107741456)


Basic Information

Item Value
gene id LOC122343085
gene name LOC107561645,LOC107566978,LOC107748257,LOC107741456
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20640142 ~ 20644792 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237403.1
TTGGGAGAATCCAGGTTTAGTTGTAGGGCCAGTTCTCCACCGCCCAGACAGAATTGTCTGGATAATGAGGTTTTGTGCCCATGGCCATGACCTCTTCACCCAAGGATCTGTCTCTGGGTCTCATCTAGGTGGTCTGGTTTCCACTGAGGATCAGGGCTGTAGAAGTGGACTCTAGCTCCTGATCCACCATCAGGTCTGGATACGGACTGGCTCTGGGATTGGATTAGTCACGCTTCGCCATCTGTATCTGCTATAGACTCATTGTATTGGTAGTTGTGATGTTAGAAGTAGATTTAtcgattattatttttacaaatttctcCATATTTAGGGCAGATCCACgaatgatatatttatgtttttacataatcTCCTGTAGCATCTAGAACTctataattttgttaaatgtatattttgtgctTAATTCTGAAATCCaataatctctctctttcattacACTAAACTCCAGTCCAGATAAGAAATGCCCCGACTACAGTCAGTGTTGATATAAATTCTGAAACAGGTGCGAGTGTAAATGCTCCTTTATTGACTGCGAACACCTTCACAGGACCAGTAACCATTTATGGCTCAAATGCTGAAGGAAACGATAAACAGAAATCCTCAGAGATGGCAGAggaacacagagaaaaacaagagctgcaaaactttttggaaactcacaaaacaaacatgaaggagaaaacaatatatttttgaggGCAACAAAGACAATGAAGCACAACTCAAGGCTATTTACACAGAACTGTTCATCACAGAGGGAGATATGAAAGATGTCAATCACGAACATGAGATTCTGAGGATTGATGATGCCTTcaagagcaaaaaaacacaGGACAAACTAATCATatctaatgatatatttactgaactGAGTAAAAACAATGAGAAAAAGATTGTGCTGACTAAAggagtcgctggcattggaaaaactgtctctgtgcaCAGGTTGATCCTGGACTGGGCCGAAGGAAACACCAATCAAGATATACACTGTGTGTTCCTgcttccattcagagagatTAACTTAATGACAAATGAAGATTTCAGTCTCCATGAGCTTCTGCTGGAATTTTATCCTGAACTGAATGACCTGGAGAAATCAAAGCTATATAAGGAATGTAAgatagcatttatatttgatggacttgatgagAGTCGCCTACctataaattttaaaagtagatcACTGAACACTGTTGAGAAAAAAGCATCTGTGGATGTGCTCTTTACAAGTCTGGTCAAAGGGACTCTGCTTCCATCAGCTCTTGTCTGGGTCACATcacgaccagcagcagccaatcagatccctccTCAGTATGTGGGTTTGTTCACAGAGGTGCGAGGATTCACTGACCAACAGAAGGAGGAGTACTTCAGAAAGAGATTCACAGATGAGAGTCTGTcctccagaatcatctcacacatgaAGATGTCTCGTAgtctctacatcatgtgccacattcctgtgttctgctggatcacagccacagtacttcaggatattctctctgagaacaatgaagagaacatcagcacaacactcactgaaatgtacattcacttcctgCTGATACAGATGGAAATGAAGAACCAAAAGTATGATGAACAAGAAGAAAGAGAACGTACAGAGCACTTacgaataaatgaaaaaaattttttaagttaG
>XM_043237404.1
gtttTGCAGCATGTCTCAACGAATCCCTCTTAAGCAACACGTCCTCTAATAGCTAGGTGGTCTGGTTTCCACTGAGGATCAGGGCTGTAGAAGTGGACTCTAGCTCCTGATCCACCATCAGGTCTGGATACGGACTGGCTCTGGGATTGGATTAGTCACGCTTCGCCATCTGTATCTGCTATAGACTCATTGTATTGGTAGTTGTGATGTTAGAAGTAGATTTAtcgattattatttttacaaatttctcCATATTTAGGGCAGATCCACgaatgatatatttatgtttttacataatcTCCTGTAGCATCTAGAACTctataattttgttaaatgtatattttgtgctTAATTCTGAAATCCaataatctctctctttcattacACTAAACTCCAGTCCAGATAAGAAATGCCCCGACTACAGTCAGTGTTGATATAAATTCTGAAACAGGTGCGAGTGTAAATGCTCCTTTATTGACTGCGAACACCTTCACAGGACCAGTAACCATTTATGGCTCAAATGCTGAAGGAAACGATAAACAGAAATCCTCAGAGATGGCAGAggaacacagagaaaaacaagagctgcaaaactttttggaaactcacaaaacaaacatgaaggagaaaacaatatatttttgaggGCAACAAAGACAATGAAGCACAACTCAAGGCTATTTACACAGAACTGTTCATCACAGAGGGAGATATGAAAGATGTCAATCACGAACATGAGATTCTGAGGATTGATGATGCCTTcaagagcaaaaaaacacaGGACAAACTAATCATatctaatgatatatttactgaactGAGTAAAAACAATGAGAAAAAGATTGTGCTGACTAAAggagtcgctggcattggaaaaactgtctctgtgcaCAGGTTGATCCTGGACTGGGCCGAAGGAAACACCAATCAAGATATACACTGTGTGTTCCTgcttccattcagagagatTAACTTAATGACAAATGAAGATTTCAGTCTCCATGAGCTTCTGCTGGAATTTTATCCTGAACTGAATGACCTGGAGAAATCAAAGCTATATAAGGAATGTAAgatagcatttatatttgatggacttgatgagAGTCGCCTACctataaattttaaaagtagatcACTGAACACTGTTGAGAAAAAAGCATCTGTGGATGTGCTCTTTACAAGTCTGGTCAAAGGGACTCTGCTTCCATCAGCTCTTGTCTGGGTCACATcacgaccagcagcagccaatcagatccctccTCAGTATGTGGGTTTGTTCACAGAGGTGCGAGGATTCACTGACCAACAGAAGGAGGAGTACTTCAGAAAGAGATTCACAGATGAGAGTCTGTcctccagaatcatctcacacatgaAGATGTCTCGTAgtctctacatcatgtgccacattcctgtgttctgctggatcacagccacagtacttcaggatattctctctgagaacaatgaagagaacatcagcacaacactcactgaaatgtacattcacttcctgCTGATACAGATGGAAATGAAGAACCAAAAGTATGATGAACAAGAAGAAAGAGAACGTACAGAGCACTTacgaataaatgaaaaaaattttttaagttaG

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237403.1 True 1687 mRNA 0.40 3 20641611 20644792
XM_043237404.1 False 1615 mRNA 0.40 4 20640142 20644792

Neighbor

gene id symbol gene type direction distance location
LOC122342277 LOC107741474 coding upstream 1531 20633884 ~ 20638611 (+)
LOC122343005 NA coding upstream 81128 20543132 ~ 20559014 (+)
LOC122342276 NA coding upstream 124513 20505411 ~ 20515629 (+)
LOC122343122 NA coding upstream 163434 20470670 ~ 20476708 (+)
LOC122342275 NA coding upstream 171081 20468226 ~ 20469061 (+)
LOC122342964 NA coding downstream 10423 20655215 ~ 20677909 (+)
LOC122342951 NA coding downstream 145383 20790175 ~ 20800541 (+)
LOC122343111 NA coding downstream 257427 20902219 ~ 20906726 (+)
LOC122343116 NA coding downstream 272758 20917550 ~ 20918689 (+)
LOC122342280 NA coding downstream 276643 20921435 ~ 20929163 (+)
G29945 NA non-coding upstream 8813 20630820 ~ 20631329 (+)
G29927 LOC107681551 non-coding upstream 142274 20497097 ~ 20497868 (+)
LOC122343178 NA non-coding upstream 177800 20459370 ~ 20462342 (+)
LOC122343162 LOC107575631,LOC107741456,LOC107667978,LOC107575420,LOC107741609,LOC107727338,LOC107575457,LOC107566978 non-coding upstream 196917 20440548 ~ 20443225 (+)
LOC122343173 NA non-coding upstream 201634 20437665 ~ 20438508 (+)
G29947 LOC107709565,LOC107727338,LOC107575420,LOC107569100 non-coding downstream 465 20645257 ~ 20645535 (+)
G30005 NA non-coding downstream 140517 20785309 ~ 20785530 (+)
G30003 NA non-coding downstream 235657 20880449 ~ 20882908 (+)
G30024 NA non-coding downstream 265362 20910154 ~ 20975778 (+)
G30025 LOC107561645 non-coding downstream 267766 20912558 ~ 20934912 (+)
G29921 NA other upstream 271326 20367675 ~ 20368816 (+)
LOC122342270 NA other upstream 293418 20344346 ~ 20346724 (+)
LOC122343063 NA other upstream 596689 20037933 ~ 20043453 (+)
G29835 NA other upstream 854014 19731262 ~ 19786128 (+)
G29961 NA other downstream 51880 20696672 ~ 20706846 (+)
G30058 NA other downstream 473770 21118562 ~ 21142831 (+)
LOC122342286 LOC107578117 other downstream 524401 21169193 ~ 21174340 (+)
LOC122342301 LOC107563870,LOC107718524,LOC107683800,LOC107564010,LOC107563545 other downstream 723851 21368643 ~ 21761181 (+)
G30119 NA other downstream 743401 21388193 ~ 21630120 (+)

Expression


Co-expression Network