exosc2 (exosc2,exos2)


Basic Information

Item Value
gene id exosc2
gene name exosc2,exos2
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17933305 ~ 17937916 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237406.1
GCTCCGCTTTTCGCGCGGTTCCGGTGAGAAGCATGGCGGCGGAGATGAGGCTCCCGGCGGCGTATAAACACATTCCACCGGCCGTATCTCGGTCTAACCGGGATGACAAACACCTGGTGGTTCCTGGAGATATCATTACATCCGACACGGGCTTCATGAGGGGTCATGGCACATACATGGATGAAGACAGACTCACGGCTTCAGTGGCTGGAGAAGTGGAGCGAGTCAACAAGCTGATCTGTGTCAAACCGCTGAAGACCAGGTATAACGGCGAGGTCGGGGACGTGGTCGTGGGCAGGATCACAGAGGTGCAGCAGAAGAGATGGAAAGTGGAGACGAACTCGCGTCTGGATTCGGTTCTGCTGCTGTCTTCAGTCAATCTGCCCGGAGGAGAGCTGaGACGGCGATCAGCGCAGGACGAGCTGGCCATGAGAGACTACCTCCAGGAAGGGGATCTCATCAGCGCCGAGGTGCAGTCGATCTTCTCGGACGGCGCTCTGTCTCTTCACACACGCAGCTTGAAGTACGGCAAGctggGACAGGGCGTGCTGGTGCTGCTGTCTCCGTCCCTCGTCAAGAGACAGAAGACGCACTTCCACAATCTGCCCTGCGGAGCCTCCATCATCCTGGGAAACAACGGCTTCGTGTGGCTTTACCCCACACCGGCTCAGCAGGACGAGGAGGCCGGAGGCTTCTACACCAGCATGGAGGCCGTGTCTCTGTCCGATCGGGAGGTGATCTCCAGGCTCAGGAACTGTTTGCTGGCTCTCGCGGCTCATAAGGTTCTGCTGTACGACACAAGCGTGCTTTACTGCTACGAAGCGTCTCTTTCTCATCAGATTAAAGACATCCTGAAGCCAGAGATCACGGAGGAGATCATTCTGGAGACGCGGCAGCGTCTGGTGGAGCATGAAGGATGAACCTCCGACTGTCTTTTTAACCTCTTTGTACGAACCCCGCTGTTCATAGTTTGCAATAAATGAATTTTGCAGAAAA
>XM_043237407.1
ATAAACACATTCCACCGGCCGTATCTCGGTCTAACCGGGATGACAAACACCTGGTGGTTCCTGGAGATATCATTACATCCGACACGGGCTTCATGAGGTACAGACGCGTCTTCATACGAGCGCTTTATCCTCATAAACGGGTCATGGCACATACATGGATGAAGACAGACTCACGGCTTCAGTGGCTGGAGAAGTGGAGCGAGTCAACAAGCTGATCTGTGTCAAACCGCTGAAGACCAGGTATAACGGCGAGGTCGGGGACGTGGTCGTGGGCAGGATCACAGAGGTGCAGCAGAAGAGATGGAAAGTGGAGACGAACTCGCGTCTGGATTCGGTTCTGCTGCTGTCTTCAGTCAATCTGCCCGGAGGAGAGCTGaGACGGCGATCAGCGCAGGACGAGCTGGCCATGAGAGACTACCTCCAGGAAGGGGATCTCATCAGCGCCGAGGTGCAGTCGATCTTCTCGGACGGCGCTCTGTCTCTTCACACACGCAGCTTGAAGTACGGCAAGctggGACAGGGCGTGCTGGTGCTGCTGTCTCCGTCCCTCGTCAAGAGACAGAAGACGCACTTCCACAATCTGCCCTGCGGAGCCTCCATCATCCTGGGAAACAACGGCTTCGTGTGGCTTTACCCCACACCGGCTCAGCAGGACGAGGAGGCCGGAGGCTTCTACACCAGCATGGAGGCCGTGTCTCTGTCCGATCGGGAGGTGATCTCCAGGCTCAGGAACTGTTTGCTGGCTCTCGCGGCTCATAAGGTTCTGCTGTACGACACAAGCGTGCTTTACTGCTACGAAGCGTCTCTTTCTCATCAGATTAAAGACATCCTGAAGCCAGAGATCACGGAGGAGATCATTCTGGAGACGCGGCAGCGTCTGGTGGAGCATGAAGGATGAACCTCCGACTGTCTTTTTAACCTCTTTGTACGAACCCCGCTGTTCATAGTTTGCAATAAATGAATTTTGCAGAAAA

Function

symbol description
exosc2 Predicted to enable RNA binding activity. Predicted to be involved in RNA metabolic process. Predicted to act upstream of or within rRNA processing. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Is expressed in immature eye; midbrain hindbrain boundary; and optic tectum. Orthologous to human EXOSC2 (exosome component 2).

NR:

description
PREDICTED: exosome complex component RRP4

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0000178 exosome (RNase complex) cellular_component
GO:0004527 exonuclease activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K03679 RRP4, EXOSC2; exosome complex component RRP4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237406.1 True 996 mRNA 0.56 9 17933305 17937916
XM_043237407.1 False 974 mRNA 0.55 9 17933368 17937916

Neighbor

gene id symbol gene type direction distance location
fabp1a fabp1,fabp1a,LOC107745323,LOC107597935 coding upstream 17711 17912439 ~ 17915594 (+)
oxt oxt,LOC107729605,LOC107745630,LOC107597959,LOC107674922,LOC107566857,LOC107670390 coding upstream 30388 17901441 ~ 17902917 (+)
LOC122343009 zgc:65851,LOC107670379,LOC107668750,LOC107599600,LOC107708255,LOC107755851,LOC107573085 coding upstream 121842 17805840 ~ 17811463 (+)
kdr kdr,LOC107755244,LOC107665394,LOC107683984,LOC107718422 coding upstream 267408 17644435 ~ 17665897 (+)
clocka clock,clocka,LOC107701480 coding upstream 302483 17582070 ~ 17630822 (+)
abl1 abl1,LOC107670387,LOC107597931,LOC107674916,LOC107566858 coding downstream 1768 17939684 ~ 17963519 (+)
ddx54 ddx54,LOC107729212,LOC107745378,LOC107674901,LOC107597958,LOC107566861,LOC102784149 coding downstream 47077 17984993 ~ 17997658 (+)
lman2la lman2l,lman2la,LOC107660366,LOC107565653,LOC102299173 coding downstream 264819 18202735 ~ 18210893 (+)
LOC122343129 LOC107565648,LOC107660365,LOC106563294,LOC108274068,LOC107733731 coding downstream 280800 18218716 ~ 18222320 (+)
rab21 rab21,zgc:154045,LOC107687573,LOC107690748,LOC106609839 coding downstream 609615 18547531 ~ 18554389 (+)
G29364 NA non-coding upstream 901 17931884 ~ 17932404 (+)
G29318 LOC107745315,LOC107597934 non-coding upstream 10416 17916054 ~ 17922889 (+)
G29329 NA non-coding upstream 77941 17854461 ~ 17855364 (+)
G29334 NA non-coding upstream 109040 17823250 ~ 17824265 (+)
G29331 NA non-coding upstream 114889 17818146 ~ 17818416 (+)
G29476 NA non-coding downstream 61681 17999597 ~ 18002479 (+)
G29484 tbx3a,LOC107742157,LOC107597930,LOC107687999,LOC107728866 non-coding downstream 121419 18059335 ~ 18060916 (+)
G29544 NA non-coding downstream 497727 18435643 ~ 18460595 (+)
G29548 NA non-coding downstream 503715 18441631 ~ 18465837 (+)
LOC122343196 NA non-coding downstream 653531 18591447 ~ 18594116 (+)
atp5mj NA other upstream 892475 17038419 ~ 17040830 (+)
G28982 NA other upstream 1458924 16473898 ~ 16474381 (+)
G28899 NA other upstream 1947579 15985219 ~ 15985726 (+)
G28891 NA other upstream 2091450 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 2278027 15565499 ~ 15655278 (+)
G29526 NA other downstream 362499 18300415 ~ 18301189 (+)
G29545 NA other downstream 498544 18436460 ~ 18461317 (+)
G29642 NA other downstream 945263 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 1352304 19290220 ~ 19342911 (+)
G29835 NA other downstream 1793346 19731262 ~ 19786128 (+)

Expression


Co-expression Network