LOC122343088 (znf728,LOC107572918,LOC107713773)


Basic Information

Item Value
gene id LOC122343088
gene name znf728,LOC107572918,LOC107713773
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22690338 ~ 22692710 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237408.1
gTCATCGGTCTGCGCCGCGCTCCGGCTGTTTGTTTTGGTTCGACAGAAGATAGAAATCCATGTGCACGCAATTGCAAAGATGGCTTTTATTAAAGAGGAAACTGAAGATATAAAGATTGAAGAAGCATTTGGAGTAAAACAAGAAGACACCGATGAAGATATAGACCTGATGGAGCTGATAGAAGAGAGTAGAGATCGGTATAAGAAACGCGATCGCAGCACTGGAGAAAAGTCTTTAAGTTGTTCACAGACCGAAGAGACTCCCTCACAAGAAAAAGCTCAGAAGTCTCGAGTTAGAAATCGCGTCATCTGCTCCGAGTGCGGGAAGTGTTTCAGCCATCAAGGAAACCTTAAAGTGCACATGAGGGTTCACAGCGGAGTGAAGCCCGTCGCCTGTCCTCAGTGCGGAATCAGGTTCACTCAGCAAGTCAACTTCGACCGACACGTGCGGGTTCACGACGAAGACAAGCCCTACAGCTGCGAGCTGTGCGGAAAGAGCTTCACGGCGCAACTCAGCCTCGACTACCACATGAACAGCCACAACGGTGACCGCGAATTTTCCTGCGATCAGTGCGGTAAGCGCTTCAGGCACAAAGCGGCCATTAGCAACCACATGAAGATTCATTCAAGATTGGAGAGCTTCGTGTGTCGCCAGTGTGGATCGAGTTTCACCGATCCGAATCACCTCCGGAGTCACGTAGTCACTCACTCCGGAGCGGAGCCTCACATGTGCGGTCGCTGCGGGAAGGGTTTCGCCAACAAAAGGTCCCTCAAGGTTCACATGGtgattcacactggagagaagccgttcAACTGCCAcgagtgcgggaagagtttcaaATTCCAGACCAACTTCCGGGCTCACGTGAGCGTTCACATTGAAGAGCGGTCCTTCACCTGCCCTATCCGTGGAAAGGGCTGCAAGCTCAAGCTTCGCGTGAGGCCTCGACCTTAAATGTGTATCGATCAAAAAGCCTTCAACAAGCGAcgttttcagtgttttcctcGGTGCGTCGTTTCCAAACACTACATTTTCAttgacctttttaaaaatgtttaactttatCTATACGTATGTAAAATTATGGTAATATTGCGTGAACATTCACGTGAAATTCTCTGTGTGTCAGTTTAATGCGGTAACTTATTTAcgaaaaaatatgtatttatggtATTCCGTTCTTCGAGAATGAAGCGTGTGAGCCAATAACTCAGAGAGGGaactttttgaatgaatcgaatcaaatgaataaagacatttactgcca

Function

symbol description
znf728 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

NR:

description
PREDICTED: gastrula zinc finger protein XlCGF7.1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237408.1 True 1268 mRNA 0.47 3 22690338 22692710

Neighbor

gene id symbol gene type direction distance location
LOC122343051 LOC107710267,LOC107704474,LOC107730816 coding downstream 9133 22676458 ~ 22681205 (-)
LOC122342316 NA coding downstream 46558 22637421 ~ 22643780 (-)
LOC122342315 NA coding downstream 81560 22600546 ~ 22608778 (-)
LOC122343061 LOC107677814 coding downstream 96430 22587723 ~ 22593908 (-)
LOC122342314 LOC107575554,LOC107666720 coding downstream 104875 22578346 ~ 22585463 (-)
LOC122343013 NA coding upstream 66711 22759421 ~ 22769574 (-)
LOC122343143 NA coding upstream 88952 22781662 ~ 22782254 (-)
LOC122343148 NA coding upstream 147306 22840016 ~ 22856132 (-)
LOC122342322 NA coding upstream 503837 23196547 ~ 23197615 (-)
LOC122342323 NA coding upstream 508760 23201470 ~ 23219173 (-)
G30547 NA non-coding downstream 120280 22569635 ~ 22570058 (-)
G30525 NA non-coding downstream 189164 22500162 ~ 22501174 (-)
G30520 NA non-coding downstream 202169 22487420 ~ 22488169 (-)
G30518 NA non-coding downstream 203219 22486775 ~ 22487119 (-)
G30506 NA non-coding downstream 261581 22425592 ~ 22428757 (-)
G30920 NA non-coding upstream 78145 22770855 ~ 22772854 (-)
G30926 NA non-coding upstream 94836 22787546 ~ 22789302 (-)
G30938 NA non-coding upstream 165549 22858259 ~ 22861620 (-)
G30967 LOC107561645 non-coding upstream 359038 23051748 ~ 23053620 (-)
G30992 NA non-coding upstream 571022 23263732 ~ 23264216 (-)
G30450 NA other downstream 445178 22128454 ~ 22245160 (-)
G30457 NA other downstream 473868 22216035 ~ 22216470 (-)
LOC122343153 NA other downstream 906747 21387853 ~ 21783591 (-)
LOC122342328 LOC107671223,LOC107685875,LOC107728228,LOC107749047,LOC107553362,LOC107574018,LOC107569032,LOC107575215 other upstream 724181 23416891 ~ 23437015 (-)
G31017 NA other upstream 785815 23478525 ~ 23546369 (-)
G31050 NA other upstream 1052776 23745486 ~ 23771768 (-)
G31091 kdm5a,LOC107710764,LOC107685890,LOC107693604 other upstream 1417514 24110224 ~ 24110673 (-)
G31134 NA other upstream 1611386 24304096 ~ 24497596 (-)

Expression


Co-expression Network