LOC122343102 (LOC107747636,LOC107554732)


Basic Information

Item Value
gene id LOC122343102
gene name LOC107747636,LOC107554732
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18805450 ~ 18809963 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237430.1
GTATTTCTTCCAAAGGTGCAGTTTGCTCAGGTTTTACCTCCACAGTCGTCTGATGTCGTTCGTTTCCAGGATCTGAACAGATCAGAGGTCAATTTCAGATCCTGAAACGAGAATGTCGTCCGCCATACCCCTGAATTCATTCATCATCCAGCTGCAACCTCCGATACAAACAACAGCGGTTGGGACCGCCACGAATGCTCCTGCGCCCGTTTATGTCCAGCAGGTAGCAGGACTATCATCTCTTCATGGACTTCAGGCATTTCTGACAGGCCAACCGAAAGCTCTCGGGTCTGTCCAGATAATGATTGGCCTGATGACTCTCCTGTTTGGCATTGTGTCAACATTTTATGCAGAATCCATCTTTGTCTATAGTGGTATTCCTTACTGGGGATCCATCATTTACATTATTGCAGGATCGCTCTGCGTTGCTGCAGAAAACAAAGTTAATTCAGCCTCCAGTTTGTGTTTGGTGAACGGTTCACTTGGAATTAACATTTTCAGTGCTTTAACCGCAGGCATTGCTCTTATTTTACTTTCACTGGATTTGGTTATAGCACAGTTCAATATTTCCCCTTACTGCAACGATTCTACATGTTATTATGTTAATGGAAAATATAAGACCCTATTCTACGGAATCAGAGGTGTATTGCTGTTATTCACCTTCCTTCAGTTTATCATCTCTATCTGTTTGTCAGCGTTTGCCTGTAAGGTCTCCTGTTGCTGTTGTCCTCCTCAGGTGCCATTTGTTCCTCAGGTTTTAAATCCACAGCCCCCTGATTTCAAGACCAGTAATTTCCATGATCTTAAAAGTTCAGAGatacCTGTTGTCTGCAGCTCTTCTATGAACAACCATCATGTGGACAATCTCCCAAAATACAGTGAATgccaataaataataacaagtGGGCAAAGTTTGGACCTGAAAGTTGTGTGTGATGCTTTCGTAGGACACATGGGTTATTTGCAATTGTTTTCTGTCCATTATCTTTAATACCCTATCATCATTTTAtcagataatatttttttaaacgacaTTTGTGAACAAAACATGTTGAAGATTAGATGCTATTTTGtgattttctgtcttttattaaGTTGCATAATCTGATTGTTTTAAGCAACTATAATAGCttatctgtaaaaataaatgatacagaattaaaaatttgcttaaaactga
>XM_043237431.1
ATCACCTGAGCTCCACCTGCTTCCCCTTTGATTCTGGGAAAAGGTATAAGCAATTGCTCTTGACAGAATTTGCATTGGCTTGTCTCAGACGGGTGGACAGAACTTTAGGGTCAATTTCAGATCCTGAAACGAGAATGTCGTCCGCCATACCCCTGAATTCATTCATCATCCAGCTGCAACCTCCGATACAAACAACAGCGGTTGGGACCGCCACGAATGCTCCTGCGCCCGTTTATGTCCAGCAGGTAGCAGGACTATCATCTCTTCATGGACTTCAGGCATTTCTGACAGGCCAACCGAAAGCTCTCGGGTCTGTCCAGATAATGATTGGCCTGATGACTCTCCTGTTTGGCATTGTGTCAACATTTTATGCAGAATCCATCTTTGTCTATAGTGGTATTCCTTACTGGGGATCCATCATTTACATTATTGCAGGATCGCTCTGCGTTGCTGCAGAAAACAAAGTTAATTCAGCCTCCAGTTTGTGTTTGGTGAACGGTTCACTTGGAATTAACATTTTCAGTGCTTTAACCGCAGGCATTGCTCTTATTTTACTTTCACTGGATTTGGTTATAGCACAGTTCAATATTTCCCCTTACTGCAACGATTCTACATGTTATTATGTTAATGGAAAATATAAGACCCTATTCTACGGAATCAGAGGTGTATTGCTGTTATTCACCTTCCTTCAGTTTATCATCTCTATCTGTTTGTCAGCGTTTGCCTGTAAGGTCTCCTGTTGCTGTTGTCCTCCTCAGGTGCCATTTGTTCCTCAGGTTTTAAATCCACAGCCCCCTGATTTCAAGACCAGTAATTTCCATGATCTTAAAAGTTCAGAGatacCTGTTGTCTGCAGCTCTTCTATGAACAACCATCATGTGGACAATCTCCCAAAATACAGTGAATgccaataaataataacaagtGGGCAAAGTTTGGACCTGAAAGTTGTGTGTGATGCTTTCGTAGGACACATGGGTTATTTGCAATTGTTTTCTGTCCATTATCTTTAATACCCTATCATCATTTTAtcagataatatttttttaaacgacaTTTGTGAACAAAACATGTTGAAGATTAGATGCTATTTTGtgattttctgtcttttattaaGTTGCATAATCTGATTGTTTTAAGCAACTATAATAGCttatctgtaaaaataaatgatacagaattaaaaatttgcttaaaactga
>XM_043237432.1
AGACGGGTGGACAGAACTTTAGGATCCTGAAACGAGAATGTCGTCCGCCATACCCCTGAATTCATTCATCATCCAGCTGCAACCTCCGATACAAACAACAGCGGTTGGGACCGCCACGAATGCTCCTGCGCCCGTTTATGTCCAGCAGGTAGCAGGACTATCATCTCTTCATGGACTTCAGGCATTTCTGACAGGCCAACCGAAAGCTCTCGGGTCTGTCCAGATAATGATTGGCCTGATGACTCTCCTGTTTGGCATTGTGTCAACATTTTATGCAGAATCCATCTTTGTCTATAGTGGTATTCCTTACTGGGGATCCATCATTTACATTATTGCAGGATCGCTCTGCGTTGCTGCAGAAAACAAAGTTAATTCAGCCTCCAGTTTGTGTTTGGTGAACGGTTCACTTGGAATTAACATTTTCAGTGCTTTAACCGCAGGCATTGCTCTTATTTTACTTTCACTGGATTTGGTTATAGCACAGTTCAATATTTCCCCTTACTGCAACGATTCTACATGTTATTATGTTAATGGAAAATATAAGACCCTATTCTACGGAATCAGAGGTGTATTGCTGTTATTCACCTTCCTTCAGTTTATCATCTCTATCTGTTTGTCAGCGTTTGCCTGTAAGGTCTCCTGTTGCTGTTGTCCTCCTCAGGTGCCATTTGTTCCTCAGGTTTTAAATCCACAGCCCCCTGATTTCAAGACCAGTAATTTCCATGATCTTAAAAGTTCAGAGatacCTGTTGTCTGCAGCTCTTCTATGAACAACCATCATGTGGACAATCTCCCAAAATACAGTGAATgccaataaataataacaagtGGGCAAAGTTTGGACCTGAAAGTTGTGTGTGATGCTTTCGTAGGACACATGGGTTATTTGCAATTGTTTTCTGTCCATTATCTTTAATACCCTATCATCATTTTAtcagataatatttttttaaacgacaTTTGTGAACAAAACATGTTGAAGATTAGATGCTATTTTGtgattttctgtcttttattaaGTTGCATAATCTGATTGTTTTAAGCAACTATAATAGCttatctgtaaaaataaatgatacagaattaaaaatttgcttaaaactga
>XM_043237434.1
TATTTCTTCCAAAGGTGCAGTTTGCTCAGGTTTTACCTCCACAGTCGTCTGATGTCGTTCGTTTCCAGGATCTGAACAGATCAGAGGTCAATTTCAGATCCTGAAACGAGAATGTCGTCCGCCATACCCCTGAATTCATTCATCATCCAGCTGCAACCTCCGATACAAACAACAGCGGTTGGGACCGCCACGAATGCTCCTGCGCCCGTTTATGTCCAGCAGGTAGCAGGACTATCATCTCTTCATGGACTTCAGGCATTTCTGACAGGCCAACCGAAAGCTCTCGGGTCTGTCCAGATAATGATTGGCCTGATGACTCTCCTGTTTGGCATTGTGTCAACATTTTATGCAGAATCCATCTTTGTCTATAGTGGTATTCCTTACTGGGGATCCATCATTTACATTATTGCAGGATCGCTCTGCGTTGCTGCAGAAAACAAAGTTAATTCAGCCTCCAGTTTGTGTTTGGTGAACGGTTCACTTGGAATTAACATTTTCAGTGCTTTAACCGCAGGCATTGCTCTTATTTTACTTTCACTGGATTTGGTTATAGCACAGTTCAATATTTCCCCTTACTGCAACGATTCTACATGTTATTATGTTAATGGAAAATATAAGACCCTATTCTACGGAATCAGAGGTGTATTGCTGTTATTCACCTTCCTTCAGTTTATCATCTCTATCTGTTTGTCAGCGTTTGCCTGTAAGGTCTCCTGTTGCTGTTGTCCTCCTCAGGTTTTAAATCCACAGCCCCCTGATTTCAAGACCAGTAATTTCCATGATCTTAAAAGTTCAGAGatacCTGTTGTCTGCAGCTCTTCTATGAACAACCATCATGTGGACAATCTCCCAAAATACAGTGAATgccaataaataataacaagtGGGCAAAGTTTGGACCTGAAAGTTGTGTGTGATGCTTTCGTAGGACACATGGGTTATTTGCAATTGTTTTCTGTCCATTATCTTTAATACCCTATCATCATTTTAtcagataatatttttttaaacgacaTTTGTGAACAAAACATGTTGAAGATTAGATGCTATTTTGtgattttctgtcttttattaaGTTGCATAATCTGATTGTTTTAAGCAACTATAATAGCttatctgtaaaaataaatgatacagaattaaaaatttgcttaaaactga

Function

NR:

description
PREDICTED: membrane-spanning 4-domains subfamily A member 8-like

GO: NA

KEGG:

id description
K22190 MS4A3S; membrane-spanning 4-domains subfamily A member 3/4/8/12/15/18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237430.1 False 1180 mRNA 0.40 8 18805450 18809963
XM_043237431.1 True 1202 mRNA 0.40 8 18806132 18809963
XM_043237432.1 False 1105 mRNA 0.39 8 18806218 18809963
XM_043237434.1 False 1161 mRNA 0.39 8 18805451 18809963

Neighbor

gene id symbol gene type direction distance location
LOC122342235 LOC107685875,LOC107749047 coding upstream 22640 18758554 ~ 18782810 (+)
LOC122342234 LOC107685386,LOC107554769,LOC107712902 coding upstream 150345 18646798 ~ 18655105 (+)
si:ch211-166e11.5 LOC107685387,LOC107554747,LOC107712904 coding upstream 158522 18634109 ~ 18646928 (+)
LOC122343000 LOC107554745,LOC107700104,LOC107746770 coding upstream 173013 18627425 ~ 18632437 (+)
LOC122343002 NA coding upstream 178179 18619551 ~ 18627271 (+)
LOC122343011 NA coding downstream 897 18810860 ~ 18814594 (+)
LOC122342961 NA coding downstream 13962 18823925 ~ 18832593 (+)
LOC122343055 LOC107554755,LOC107730198,LOC107663244 coding downstream 55890 18865853 ~ 18869783 (+)
LOC122343078 LOC107730199 coding downstream 84938 18894901 ~ 18897790 (+)
LOC122342974 NA coding downstream 98953 18908916 ~ 18915022 (+)
G29627 NA non-coding upstream 20204 18785045 ~ 18785246 (+)
G29600 NA non-coding upstream 140367 18662860 ~ 18665083 (+)
G29591 NA non-coding upstream 202134 18600428 ~ 18603316 (+)
LOC122343196 NA non-coding upstream 211334 18591447 ~ 18594116 (+)
G29548 NA non-coding upstream 339613 18441631 ~ 18465837 (+)
G29633 NA non-coding downstream 4920 18814883 ~ 18815278 (+)
LOC122343164 NA non-coding downstream 93272 18903235 ~ 18907824 (+)
G29777 NA non-coding downstream 122356 18932319 ~ 18932690 (+)
G29797 NA non-coding downstream 157424 18967387 ~ 18967714 (+)
G29803 NA non-coding downstream 235747 19045710 ~ 19053414 (+)
G29545 NA other upstream 344133 18436460 ~ 18461317 (+)
G29526 NA other upstream 504261 18300415 ~ 18301189 (+)
atp5mj NA other upstream 1764620 17038419 ~ 17040830 (+)
G28982 NA other upstream 2331069 16473898 ~ 16474381 (+)
G28899 NA other upstream 2819724 15985219 ~ 15985726 (+)
G29642 NA other downstream 73216 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 480257 19290220 ~ 19342911 (+)
G29835 NA other downstream 921299 19731262 ~ 19786128 (+)
LOC122343071 NA other downstream 935771 19745734 ~ 19750074 (+)
LOC122343063 NA other downstream 1227970 20037933 ~ 20043453 (+)

Expression


Co-expression Network