Item | Value |
---|---|
gene id | CI01000004_09980195_09995816 |
gene name | CDH10A |
gene type | coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000004 |
NCBI id | null |
chromosome length | 17451736 |
location | 9980195 ~ 9995893 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
symbol | description |
---|---|
cdh10a | Predicted to enable cadherin binding activity and calcium ion binding activity. Predicted to be involved in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules; cell morphogenesis; and cell-cell junction organization. Predicted to act upstream of or within cell adhesion. Predicted to be integral component of membrane. Predicted to be part of catenin complex. Predicted to be active in adherens junction. Is expressed in nervous system; notochord; and pharyngeal arch. Orthologous to human CDH10 (cadherin 10). |
id | name | namespace |
---|---|---|
GO:0016021 | integral component of membrane | cellular_component |
id | description |
---|---|
K06802 | CDH10; cadherin 10, type 2, T2-cadherin |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
CI01000004_09980195_09995816.mRNA | True | 2577 | mRNA | 0.48 | 11 | 9980195 | 9995893 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000004_09684489_09685469 | MC4R | coding | upstream | 294183 | 9684489 ~ 9686012 (+) |
CI01000004_09627968_09635256 | RNF152 | coding | upstream | 344394 | 9627968 ~ 9635801 (+) |
CI01000004_09623579_09626179 | BUC | coding | upstream | 353594 | 9623579 ~ 9626601 (+) |
CI01000004_09533613_09534019 | NA | coding | upstream | 445832 | 9533241 ~ 9534363 (+) |
CI01000004_09526514_09528258 | TMEM68 | coding | upstream | 451882 | 9526514 ~ 9528313 (+) |
CI01000004_10058538_10090881 | CDH12A | coding | downstream | 62645 | 10058538 ~ 10091049 (+) |
CI01000004_10169407_10212947 | CDH18 | coding | downstream | 173514 | 10169407 ~ 10213189 (+) |
CI01000004_10376389_10423302 | DLGAP1A, DLGAP1 | coding | downstream | 380496 | 10376389 ~ 10423302 (+) |
CI01000004_10434104_10435287 | PTF1A | coding | downstream | 435940 | 10431833 ~ 10435569 (+) |
CI01000004_10514814_10550774 | NA | coding | downstream | 518921 | 10514814 ~ 10550920 (+) |
G30515 | NA | non-coding | upstream | 73649 | 9906238 ~ 9906546 (+) |
G30505 | NA | non-coding | upstream | 90439 | 9889529 ~ 9889756 (+) |
G30447 | NA | non-coding | upstream | 164110 | 9815811 ~ 9816085 (+) |
G30395 | NA | non-coding | upstream | 216901 | 9759819 ~ 9763294 (+) |
G30240 | NA | non-coding | upstream | 273921 | 9702825 ~ 9706274 (+) |
G30681 | NA | non-coding | downstream | 212573 | 10208466 ~ 10344978 (+) |
G30688 | NA | non-coding | downstream | 440337 | 10436230 ~ 10447737 (+) |
G30780 | NA | non-coding | downstream | 457709 | 10453602 ~ 10454260 (+) |
G30787 | NA | non-coding | downstream | 478857 | 10474750 ~ 10474951 (+) |
CI01000004_08976512_08980033 | TTPA | other | upstream | 999211 | 8976254 ~ 8980984 (+) |
G28859 | NA | other | upstream | 1380592 | 8599235 ~ 8599603 (+) |
CI01000004_08414451_08436256 | NA | other | upstream | 1528968 | 8414316 ~ 8439933 (+) |
CI01000004_07654234_07655677 | MRPL34 | other | upstream | 2323812 | 7654234 ~ 7656383 (+) |
CI01000004_06571261_06572539 | SEP15 | other | upstream | 3405774 | 6570771 ~ 6572667 (+) |
G30797 | NA | other | downstream | 501483 | 10497376 ~ 10497788 (+) |
G31710 | NA | other | downstream | 1641358 | 11637251 ~ 11642400 (+) |
CI01000004_11666900_11667179 | NA | other | downstream | 1668880 | 11666900 ~ 11667659 (+) |
G31865 | NA | other | downstream | 2196237 | 12192130 ~ 12197418 (+) |
CI01000004_12646972_12652534 | NA | other | downstream | 2646861 | 12646838 ~ 12652570 (+) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|---|---|---|---|---|---|
zebrafish (Danio rerio) | XLOC_015506 | cdh10a | coding | NC_007113.7 | CM002886.2 | 28889936 ~ 28934284 (+) |