CI01000004_09980195_09995816 (CDH10A)



Basic Information


Item Value
gene id CI01000004_09980195_09995816
gene name CDH10A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 9980195 ~ 9995893 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000004_09980195_09995816.mRNA
GGAATCAAAGGAAGATCAAAGGCATTTCTACAATGTCAGGGTTGCTGATGTTGCCATCTACATCGCTTTCAATTCAGCACTGCCCACCCTACTTAGCTTATTCATAAGGAGTCGCTGTCATCGTAACGATCGATTGGCTGCAATGATAATGAATCACTTCCTCTGGCTGCTTCCACTGGTCTTTCCGCACCTGAGCTCTCCAGTCATATTGCTAGAGAGGAATGATGGGAATCTCTTTCACAACTGGAACCATCTGATGAACGGAGATAAAACGGTGCTGCACAGATCCAAAAGAGACTGGATGTGGAGGCAGTTCTTCCTGTCGGAGGAATACACAGGAAGTAACTATCAGTATGTCGGCAAGCTTCGCTCAGACAAAGACAAAGGGGACGGAACTGCCAGATATGTTCTCTCCGGGGAAGGAGCAGGCACAGTTTTTCGTATCGATGAGAAGTCTGGGGATTTACATGCTACACAGAGACTGGACAGAGAGGAAAAGGCTTCTTACACACTGCAGGCCCAGGCTTTCAACAAGATCACGGGCCTCCCCTTGGAGCCTGCCACTGAATTCATTGTCAAGATACATGACATCAATGACAATGAGCCCAAATTTACCAGGGCTGTCTACACTGCCAGTGTACCTGAAATGTCAGACGTCGGTACTTTTGTAATAGAAGTCAATGCCACTGATGCAGATGATGCCACATATGGAAACAGTGCTAAACTTGTGTACAGTATCCTGCAAGGGCAGCCCTACTTCTCTGTGGATCCTGAGACAGGAATTGTCAGAATAGCCCTTTCCAATATGGACCGGGAAGTACGGAAGGAGTATCAGGTGGTTATTCAAGCCAAAGACATGGCAGGACAGATGGGTGGTCTGTCTGGAACCACCATGGTCAACATTACCCTTACAGATGTTAATGACAGCCCGCCACGTTTTGCTTACAGTTCTTACCACCTAAGCACTTATGAGTCAGCAGAAATCGGATCAACTGTGGGTCGAATCAAAGCCAATGATGGTGACGAGGGAGAAAATGCTGAAATGAAATACAGAATTGTAGATGGAGATGGCAAAGAATATCTCGATATAATTACAGATGAGATATCCCAAGAGGGTGTTATCGTTGTCAAAAAGAAAATGGACTATGAAAGCAAGCGCGTGTACACTGTGAAAGTGGAGGTGACTAACACACACCAGGACCCCAACTTCTTTCATCTGGGCCCATTCTCAGACACAGCCATCGTCAAGGTCACAGCCAAAGATGTGGATGAGCCTCCGATCTTCAGCAGGCCTCAGTATGTCTTTGAGGTCAATGAGGACACACCAAAAGGAACGGCAATTGGAACCATTACAGCCTGGGACCCCGATGCCACAGATTACCCAATCCAATATGCAATAGATCACCACACAGACCCAGATAGACTCTACCACATCGACCCCAAGAATGGATCCATCACAATTCTTAAGTCTCTTGACAGGGAAATGTCAAAGTGGCACAACATCTCAGTCTTGGCCAGTGAGATGAATAACCCTCATCAAAGAAGCCGTGTTCCTGTCTTGATAAAAGTTTTGGATGTGAATGACAATGCGCCAGAGTTTGCCATGATTTATGAGACATTTGTGTGTGAGAATGTCAAAGCTGGGCAGCTTATACAGACTATCAGTGCCATCGACACAGACGATCCTCTTGTGGGTCACAAATTTGTATTCAGCTTGAGTTCGTTGAATCCAAACTTCACCATCTTTGATAATGAAGATAACACAGCCAGAATCCTGACCAGAAGAAGTGGATTTAACAGGCGTGAAATGAGTGTCTACTATCTGCCAGTAGTTATCTCCGACAGCGACTACCCCATCCAGAGCAGCACCAGCACGTTGACCATTCGTGTGTGCAGCTGTGACGCCACCGGGAACATGCGTTCCTGCAGTGTCGATGCGTTGCTGCTCTCTGCTGGCCTCAGCACTGGGGCGCTAGTGGCGATACTTCTCTGCATGCTTATCCTGCTTATGATTGTCGTGATGTTCTCAGCTTTAAAGAAGCAAAGGAGGAAGGAACCACTGATCATCTCCAAAGAGGACGTCAGGGATAACGTAGTCAGCTACAACGACGAAGGGGGTGGCGAGGAGGACACGCAAGCCTTTGACATCGGCACACTGCGCCACCCGGAGGTGATCGAAAGCAATAAGCTGCGGCGCGACATCATCCCCGAGATGCTGTTTCCCTATCACAGACCTTCACCCATGAAAGAGTGTGCGGATGTCAGAGACTTCATTATTAGCAGACTGCAGGAAAACGACACAGACCCTTTCGCACCTCCCTATGACTCTCTCGCCACTTATGCTTATGAGGGCAATGGATCAATCGCTGAGTCACTGAGCTCTCTGGAGTCCTCCGTGACTGAGGGAGACCATGAATATGATTACCTCTCTAACTGGGGGCCGCAGTTTAAAAAACTCGCTGACATGTACATTGGAAAGGATACGGGAGTTGCCAACTAGACTGCCATTCAGTGACATTCATTCTCTGTATGTCTGATCTCACTCTGGGCTGTGAGGCATAACTTGAAAGAAGAACA

Function


symbol description
cdh10a Predicted to enable cadherin binding activity and calcium ion binding activity. Predicted to be involved in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules; cell morphogenesis; and cell-cell junction organization. Predicted to act upstream of or within cell adhesion. Predicted to be integral component of membrane. Predicted to be part of catenin complex. Predicted to be active in adherens junction. Is expressed in nervous system; notochord; and pharyngeal arch. Orthologous to human CDH10 (cadherin 10).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06802 CDH10; cadherin 10, type 2, T2-cadherin

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000004_09980195_09995816.mRNA True 2577 mRNA 0.48 11 9980195 9995893
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Neighbor


gene id symbol gene type direction distance location
CI01000004_09684489_09685469 MC4R coding upstream 294183 9684489 ~ 9686012 (+)
CI01000004_09627968_09635256 RNF152 coding upstream 344394 9627968 ~ 9635801 (+)
CI01000004_09623579_09626179 BUC coding upstream 353594 9623579 ~ 9626601 (+)
CI01000004_09533613_09534019 NA coding upstream 445832 9533241 ~ 9534363 (+)
CI01000004_09526514_09528258 TMEM68 coding upstream 451882 9526514 ~ 9528313 (+)
CI01000004_10058538_10090881 CDH12A coding downstream 62645 10058538 ~ 10091049 (+)
CI01000004_10169407_10212947 CDH18 coding downstream 173514 10169407 ~ 10213189 (+)
CI01000004_10376389_10423302 DLGAP1A, DLGAP1 coding downstream 380496 10376389 ~ 10423302 (+)
CI01000004_10434104_10435287 PTF1A coding downstream 435940 10431833 ~ 10435569 (+)
CI01000004_10514814_10550774 NA coding downstream 518921 10514814 ~ 10550920 (+)
G30515 NA non-coding upstream 73649 9906238 ~ 9906546 (+)
G30505 NA non-coding upstream 90439 9889529 ~ 9889756 (+)
G30447 NA non-coding upstream 164110 9815811 ~ 9816085 (+)
G30395 NA non-coding upstream 216901 9759819 ~ 9763294 (+)
G30240 NA non-coding upstream 273921 9702825 ~ 9706274 (+)
G30681 NA non-coding downstream 212573 10208466 ~ 10344978 (+)
G30688 NA non-coding downstream 440337 10436230 ~ 10447737 (+)
G30780 NA non-coding downstream 457709 10453602 ~ 10454260 (+)
G30787 NA non-coding downstream 478857 10474750 ~ 10474951 (+)
CI01000004_08976512_08980033 TTPA other upstream 999211 8976254 ~ 8980984 (+)
G28859 NA other upstream 1380592 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 1528968 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 2323812 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 3405774 6570771 ~ 6572667 (+)
G30797 NA other downstream 501483 10497376 ~ 10497788 (+)
G31710 NA other downstream 1641358 11637251 ~ 11642400 (+)
CI01000004_11666900_11667179 NA other downstream 1668880 11666900 ~ 11667659 (+)
G31865 NA other downstream 2196237 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 2646861 12646838 ~ 12652570 (+)

Expression


CI01000004_09980195_09995816(CDH10A) Expression in PRJCA010000

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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CI01000004_09980195_09995816(CDH10A) Expression in each Bioproject

Bar chart with 27 bars.
CI01000004_09980195_09995816(CDH10A) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015506 cdh10a coding NC_007113.7 CM002886.2 28889936 ~ 28934284 (+)