LOC122343107 (LOC107566978,LOC107575457,LOC107561645,LOC107655025)


Basic Information

Item Value
gene id LOC122343107
gene name LOC107566978,LOC107575457,LOC107561645,LOC107655025
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23725752 ~ 23727918 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237441.1
GAGgaaaaacagtgagaaaaaaTTGTTCTCACTAAGGGCatcgctggcattggaaaaactgtctctgtgcacaagttcatcctggactgggcagaaggaaaagccaatcaagatatacagtgtgtgttcctgcttccattcagagagatTACCTTAATGACAAATGAAGATTTCAGTCTCCATGAGCTTCTGCTAGAATTTTATCCTGAACTGAAGGACCTGGAGAAATCAAAGCTATATAAGGGATGTAGGctagcatttatatttgatggacttgatgagAGTCGCCTGTCTCTAAATTTTAATAGTAGATCACTGAACACTGTTGAGAAAAAGCATCTGTGGCTGTGCTCTTTACAAGTCTGGTCAAAGGGACTCTGCTTCCATCAGCTATTGTCTGGGTAACATCgcgaccagcagcagccaatcagattcctcCTCGGTATGTGGGTTTGTTCACAGAGGTGCGAGGATTCACTGACCAACAGAAGGAGGAGTACTTCAGAAAGAGATTCACAGATGAGAGTCTGTcctccagaatcatctcacacattaagacgtctcgtagtctctacatcatgtgccacattcctgtgttctgctggatcacagccacagtacttcaggatattctcactgagaacaatgaagagaacacaacactcactgaaatgtacattcacttcctgCTTATACAGATGGACATGAAGAGCCAGAAATATGATGATCAACAAGAAAGAGAATGTTCAGAGcacttacttttaaataaagagattattttaatgttagcCAAGTTAGCGTTTGAACAGCTGAAGaaggaaaacattgtgttcGATAAGAAAGATTTAAAAGAATGTGGTATTGATGTGAGTAAAGACACTGAGTTCACAGGAATGATCGCTGAGATCTTCAGAAGGAACAAAGACTTCATGGAGCAAAGGTCTTCAGCTTTGTGCATCTGAGTGTTCAGAGTTTCTtgctgcagtgcatgtgttCACCTGTTACCTAAACAAGAACATGCAGGagcttcagtttttctttgatgagccaaaagaaaatgtcacattGGAGGAGTTACTGCAGAAAGCCATTGAAAAAGCCATGGAGAGTCACAGAGGACATCTGGATTTGTTCCTGCGGTTTCTGATGGGAATTTCACTGGAATCCAGTCAAAATCTGCTCAAAGGCCTGATCACACACCCTGAAGACACCACAGAGAGCATCAAAGAAgtaactaaatgtattaaacaaaaacaaaacacatactTTATCTCAGATGAAGCTCtagtcaacttattctactgcTTACTTGAACTCAAGGATAATTCATTATATGAGGAAATACAGAGTTACctcagttcaaatgaacatccaGGAAGAGATCTCTCATCTTCAATGTGCACAGTGTTGACCTCAGTACTGCTGATGTCAGAGAAGGTTCTAGATGAGTTCAACCCAAAGAGGTTCACATCAGAACAATCAGACTACAAGAGACTCATTCCAGCtgtgagatgctgcagaaaagctctatttgacggctgtggttttgatgaaacatgctgtgaaaCTCTGTCCTCTGCTCTACAATCATCAAACCATCTGACAGAGCTGAACCTGAGGACCAAtcatctgcaggattcaggagtgaagctgctttctgatggactgaagagttcaCACTGTCGTTTAAACATACTGAGGTTTGACAATCACACACGTTTGAAACTTAATATGTTCAAACATGTTAATAAATAGGTGTTTCATTGTTATAGGTAGCAGATATTTCAGTATGATtgtatcagtgttattttatctagtcaaaaaaacaaaaacagagaattTTGTAATACCGTTTTCCACTTATGAGCTTAAATAAGACCTCAAtgacttttaatagtttatttaaaaaatgttatgtgtaGGGACCCCAAGAAATATATATTCTGTGTTTAATACTATTCAAAAgtattaatgtatgtattttatttttttatt

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237441.1 True 1995 mRNA 0.39 2 23725752 23727918

Neighbor

gene id symbol gene type direction distance location
LOC122343073 NA coding downstream 466433 23256365 ~ 23259319 (-)
LOC122342325 LOC107741456 coding downstream 475138 23240075 ~ 23250614 (-)
LOC122342324 NA coding downstream 488672 23230042 ~ 23237080 (-)
LOC122342323 NA coding downstream 506579 23201470 ~ 23219173 (-)
LOC122342322 NA coding downstream 528137 23196547 ~ 23197615 (-)
LOC122343128 LOC107728228,LOC107569032,LOC107685875,LOC107705465,LOC107574018 coding upstream 88931 23816849 ~ 23929534 (-)
LOC122342994 LOC107749047,LOC107685875,LOC107728228,LOC107570416,LOC107671223 coding upstream 479737 24207655 ~ 24220008 (-)
LOC122343156 LOC107674852,LOC105007321,LOC107551422,LOC103361099,LOC107732279,LOC107677819,LOC107725800 coding upstream 537431 24265349 ~ 24266607 (-)
LOC122342338 NA coding upstream 584924 24312842 ~ 24319112 (-)
ckap4 NA coding upstream 749078 24476996 ~ 24479914 (-)
LOC122343181 NA non-coding downstream 49794 23674126 ~ 23675958 (-)
LOC122343190 NA non-coding downstream 229001 23494326 ~ 23496751 (-)
G31024 NA non-coding downstream 250929 23474255 ~ 23474823 (-)
G31020 LOC107728228 non-coding downstream 254001 23458727 ~ 23471751 (-)
LOC122343160 NA non-coding downstream 269936 23454277 ~ 23455816 (-)
LOC122343201 NA non-coding upstream 117 23728035 ~ 23731996 (-)
LOC122343194 NA non-coding upstream 4835 23732753 ~ 23743520 (-)
LOC122343184 NA non-coding upstream 39359 23767277 ~ 23779966 (-)
G31062 NA non-coding upstream 274948 24002866 ~ 24009615 (-)
G31063 NA non-coding upstream 275774 24003692 ~ 24010050 (-)
G31017 NA other downstream 179383 23478525 ~ 23546369 (-)
LOC122342328 LOC107671223,LOC107685875,LOC107728228,LOC107749047,LOC107553362,LOC107574018,LOC107569032,LOC107575215 other downstream 288737 23416891 ~ 23437015 (-)
G30450 NA other downstream 1480592 22128454 ~ 22245160 (-)
G30457 NA other downstream 1509282 22216035 ~ 22216470 (-)
LOC122343153 NA other downstream 1942161 21387853 ~ 21783591 (-)
G31050 NA other upstream 17568 23745486 ~ 23771768 (-)
G31091 kdm5a,LOC107710764,LOC107685890,LOC107693604 other upstream 382306 24110224 ~ 24110673 (-)
G31134 NA other upstream 576178 24304096 ~ 24497596 (-)
G31120 NA other upstream 578583 24306501 ~ 24495178 (-)
LOC122342340 NA other upstream 596052 24323970 ~ 24327263 (-)

Expression


Co-expression Network