LOC122343111


Basic Information

Item Value
gene id LOC122343111
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20902219 ~ 20906726 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237448.1
TTAGTCTGTGTTTGTCGGGTCTCAAAGTCGAGTTCACGTgtcttataattataataaagacTGTTCATTTGATCCACTGATTCGTCCATCTTTTGGTATGTAAATCTCTATAAATATAAGagcttttcaaataataattaataaaaatattataataatttaatttgaaacagctgaattgtgtattttgtgttgAGATTTAGAAAGTTTTTAACATTCTATTTACAGTAATCTATAAATAGTAAAAGAGAAGGAAATCTAAAACACAACTCATTTGTTCCTTCTGTTCccagataaaattaaatatggaatTGTCAGGTGAGTTTTGGGGTGTCTTGACTGCAACAATAACTTTGTGGAGGCGAGATGTGTAGATATGAAGACATATAGATTTAATTGTATAAGGGGTTTGATACACACATGATATGTTTCACTAGAGATCGCAGCAATGATTCCTTTCCCAGGCCTGCTCCACTGCTCTTCACACCTGGAGACCTTGACCATTGTCAGATAAGACTGGAGAtgcttcttaaaaataatagcaatgcTCATAACTGCGTGTTATTCTGACTTGCTCGATTTTCACTTCAGGCAGCcgttaattttactgtattttagatGGATCAACTGTTTATCTGCAAAGAAGAAACAACAGATGAATGTCTTGCTGAAGTATGCTGTGGAGTAAAGCCTGTCGACAGATACATTGTGAAGGATCGCCATGGGCACAAGGTCTTCAGTGTTCTCGAGGACAGTGATTGTTGTGACAGGCAGTTCCGTGGAGGTGCACGTCCTTTCATAATGAAGGTTACCAACGTCTCAAATCAAGAGCTTCTCAGACTGGTTCACCCATCTGTTCACTGCTGCGGGAGCCATGAGctGGAAGTTCAGTCTCCGCCAGGCAGTCCCATCGGATATGTTCGACACAACTGCCATGTTTTCATGCCGAAAAAATTCACTCTTGAGAATGAACGAGGCCAGCCGCAATTTAGGATTGAGGGACCGTGTGTAAACTGTGACTGCTGTGAAGAGGACAACTTTGAGCTGATGACTTTGAATGAGGAAAACGAGGCAACATCACACAGATCAGTTGGAAACATCATCAAATCTTTCTTAGACAGTGGACCAAATAAAGGGCAGCACTTCGTCCTGAGCTTTCCAAGCAACCTGgatgtcaaaatgaaagttACTGTACTGGGAGCATGCATACTCATTgtttCCAAATATAACGACAGGAAATCAAGGATACCGCTCTGGCTCACCTGCTTATCTATGGCATGCACTTGCTGGAAAATTTACTAGGCAGGTCTTTGCCCCATCCAACAATTTCAGCAAACATCTCAATgtgaattaagaaataaaatttgcatATGTAAAGAATGACATCTTGGCCATGCACCTATGCTATTGTAACTGAAGTCCTCCCGGTCGTGACTAAAGCATATTCAGAGATAATAGGTTTGTTTGATTGGCTGCCGTCtgaaaaaagcaattaattctGGTTAGAACATTTGTCCGACTTTGAGCTGCAGCTGCCTTACGATCATATCTCGGAagccaaaaaagcaaaaaaaaaacctcacactATTTATGAAAAATGGCCCCCAATCGAGCATGGTTtatcccaaggtttttttctccattttcacACAGATGAAgctttggttccttgccgctgttgcctctggcttgctcaGTTGGGGACATTTGATTTCTAAGTGTCGCcgatttgttaaataaattttcGGCAAAAGTTTTTTATGAAACATAAATGACTACTTAACAGAGAATACAATTTGTTCTGAAACAACTGAAATTTGTTCACAATTTGCTTACTGTAAAGTTGTTACTTTGAGGAGTATGGATAACCTAACAGCTGACttccataatgtttttttctccacactATGGGATTTCAATGGCTCctgtcaactgtttggttagcCACTGTAATGCAGAGTCAGAGATGTTTGGCTCCATGTGCTAGCTCTTTATTTAGAGTGGTCgaacaggcaataggtcaacaGTAGCGTCAGGGACAAGACAAGGGCAGAATCTATAAACAGGCAGAGATCGAGACAGGCAGCAAGTATCAAAGTCATTAAGTCCAGGTGTCATTGGGCAGGCAGCATTCAAACACAGAATCGAGAAACAGTCGAAGGTAGTCTCAGGGAAATCAATAGGAAGAAATTAACTCTTAGAATTACCAGCAGAGCAAGGATAAGACTTTGCACTAAGCATGAGTCAGGGCACAGTTTAAATAGCCGGCGTGATGGGAAGCACCTGGGCCGGCAATTGGTCCAAGGTGTGGAGCATGATGGAAAATGTAGTTCCTTGCGGGTAGTATCTGGGAGAAGGTTCCCTCCGGTGGCCGTTGGTTCATGATACCCACATTCCTCAAAGTATCTAATGTGTTCGGCAAACAAAAAGGAATTCAtgcgggtttggaacaacttttCAGTAAGCAagtaatgaatacatttttaaatcctgCCTTAATAGTTCAcatagtatttttatacaaGGTTATATATTCAGTTAAGAGAAAGACTGCATTTGTTTTGCTCCAAACAAGTGGCTTTTGCAAAGATATTTTCCTAGATTATAGAAAAGGATGTtacagaataataatttaatttaatgataatttaataattaactgaataatgatattttttgaaaactgaCATCCTACACGTTCTCCCACATCGCATCACATATCGtaaataaaagccattaaatGAGCAcatagtattattttaatgaattcccTGTTAACAGTAGGCATACATGCTTctgttttttgtgtgctttcaaaattttttattaacacacaGTTGCGTgagacacatttatatttacatatatttttacaatattgtttCATGTACTCAGTGGTTACTGTATACATATTCAAGAGAAGAACATACACTCAGTTATTTTAATCAGTCTAAAGCTTTAAGTCAGTCATTACAAAtatcttaaagaaaaaaagtttt

Function

GO:

id name namespace
GO:0042613 MHC class II protein complex cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237448.1 True 2999 mRNA 0.38 5 20902219 20906726

Neighbor

gene id symbol gene type direction distance location
LOC122342951 NA coding upstream 101678 20790175 ~ 20800541 (+)
LOC122342964 NA coding upstream 224310 20655215 ~ 20677909 (+)
LOC122343085 LOC107561645,LOC107566978,LOC107748257,LOC107741456 coding upstream 257427 20640142 ~ 20644792 (+)
LOC122342277 LOC107741474 coding upstream 263608 20633884 ~ 20638611 (+)
LOC122343005 NA coding upstream 343205 20543132 ~ 20559014 (+)
LOC122343116 NA coding downstream 10824 20917550 ~ 20918689 (+)
LOC122342280 NA coding downstream 14709 20921435 ~ 20929163 (+)
LOC122342283 NA coding downstream 111426 21018152 ~ 21020872 (+)
LOC122343014 NA coding downstream 133054 21039780 ~ 21044018 (+)
LOC122342958 LOC107566977,LOC107677745 coding downstream 148766 21055492 ~ 21066850 (+)
G30003 NA non-coding upstream 19311 20880449 ~ 20882908 (+)
G30005 NA non-coding upstream 116689 20785309 ~ 20785530 (+)
G29947 LOC107709565,LOC107727338,LOC107575420,LOC107569100 non-coding upstream 256684 20645257 ~ 20645535 (+)
G29945 NA non-coding upstream 270890 20630820 ~ 20631329 (+)
G29927 LOC107681551 non-coding upstream 404351 20497097 ~ 20497868 (+)
G30024 NA non-coding downstream 3428 20910154 ~ 20975778 (+)
G30025 LOC107561645 non-coding downstream 5832 20912558 ~ 20934912 (+)
LOC122343171 NA non-coding downstream 64784 20971510 ~ 20972249 (+)
G30056 NA non-coding downstream 210935 21117661 ~ 21118522 (+)
LOC122343166 NA non-coding downstream 219359 21126085 ~ 21126420 (+)
G29961 NA other upstream 195373 20696672 ~ 20706846 (+)
G29921 NA other upstream 533403 20367675 ~ 20368816 (+)
LOC122342270 NA other upstream 555495 20344346 ~ 20346724 (+)
LOC122343063 NA other upstream 858766 20037933 ~ 20043453 (+)
LOC122343071 NA other upstream 1152145 19745734 ~ 19750074 (+)
G30058 NA other downstream 211836 21118562 ~ 21142831 (+)
LOC122342286 LOC107578117 other downstream 262467 21169193 ~ 21174340 (+)
LOC122342301 LOC107563870,LOC107718524,LOC107683800,LOC107564010,LOC107563545 other downstream 461917 21368643 ~ 21761181 (+)
G30119 NA other downstream 481467 21388193 ~ 21630120 (+)
G30115 NA other downstream 732814 21639540 ~ 21641756 (+)

Expression


Co-expression Network