LOC122343120 (LOC107746441,LOC107599206,LOC107661202)


Basic Information

Item Value
gene id LOC122343120
gene name LOC107746441,LOC107599206,LOC107661202
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17711195 ~ 17713523 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237470.1
TTCTGATAAGTCTcaatttgtgctgtcaaatgattaatcgcattgaaaataaaagttttgcttAAATTTGTGTATGAAAATATACAGGTACCAACCAGCCATCCTGTTATAGCTCAGTATTTTTAGTGGTAAATTTCTGCCACAATTGcctgttttacataaatgtaacaaatgtttctACCGTGCGGTTTGGACAGTATTCATGAAATTTAATGAGACGGTTTCTTTTTTAGACGTCAAGAATGAGCTACACAGTATGACCAAAACTGAGCAGGGAAGTGCTGGAACAGATACAAGTGTGTTGAGTGAGGAGTCATCCCTTGAAGTGGCTGTAAAAGTAGAAAAAGAGGAGGGATATGGAGAACCAATCCCTGTAACACTCTCTGTAGTGGAGGAGCCTAACTCAGACAGACTTTCTCTGGCTCAGTCTCAACTGCTGGAAGACTGGAGACCTGAGCCATTGCAGTCAGAGAGCTGCCAAACAAACATGCACTTTCAGTCCACCAATCAATCCCTAGATTTCCTGTCATCCTCAAGCTCAGGTCATCAAAGCCACTTCCCGAAGCTCCACAACAACAATTACAAAGTTCCCGAGCGCCATGCATTTCCCCCCGGCCGAAGATTGTATCGTTGCGGCCTCTGTGAGCGAGACTTTAACCGCAAGCAGCATCTCAAGATCCATCAGAGGATCCATACGGGAGAGAGGCCGTACACTTGCTCCATCTGCAGCGCACGCTTTCGTCACGCACTGACACTCAAGCGGCACTCTCGCATCCATACGGGAGAGAAACCTTACGTTTGTGATCAGTGTGGGAAAAAGTTTAGGAATGATGGTGGTTTGAAGTTCCATCAGTGTTCATGACAACAGTCGTATAATTGCACTGTCTATTGTAGTCATGTCTATAGGGTTATCCCAGGAAAGGAAAGGTCATTAAATAGATGGTTCACCCAATTtgacatttaatgtaaatatatttttaatgaaatctgagtgGTTTCTGTCCCTCTATTAAAAGTCAAGTTAACCAAAACTTACAAGAACCAAAATGGAGtaaaattacttaataaatattaaataataaatcattttttcagCCTTTTATTTACATCTTAACAATAATCAGCGCACACATACATAGAACATAGCATTTGGTAAACACAGAAGCTTTATCAATGAGGTTTATTGTAGCTTCCATGTGATGGTTTACCATTTGTGATGCactttatgtttgtgtgtttatatgtagaATCCACATAACATTGGATCAAACCTCTTGATTCATATGCGTGGACTCTTTGGATCTTTTAGCCTGAGTTAGAGGTTTTAGTTACCTAGACTTTCAGTGGAGGGACACTGAACAGATTTAACCAACACTATTATAGAATTTAATATGCTTTTCAAAGAATAAACAAAGTGTAATGGGTTTGAAATTACATGAATTTAAATTTCCGGTTGAAAAATCCCTTTGAGATGATATTAATGGATCCTGGATTCCTTGTCTATGAAATCCCTGCTTTAGGTAAAAGCATGTGTCTAATGGATATCGGTTATACCTTAATGCCTTtcaaaaatatctgtatttcCCGGTGATTTGAAGTGCCTGACAAGACTTTAATACGAATACTGTTAGATTGAATCACACTTTGAAAGAATGAGATGaagtgatggaaaaaaaatagcaaattttatataatatttctaagGTCTGGAATATCTTACAAGACTTCATGTAGAAACATGTAGTTCATTAGACTATTTACAAAGTTGGAAAAATGTATGATGCctagcattttaaaatctgttcaaattttaaaagtcatgtagTGTCTTCCAGCCTTTAGCCATCTGTGTTATGGTGCTCAGGATTAATCTGAACTTGAACCCTTTTGTACTTGATCTTCACAAATCAACAAGTGTTATACCAACCatcaaaatctttaaaatggaGACATTCTCTCCATTTCTAACTTGTGAAGACCCCTCAAACCacacaaacataataaatgaaataaagaaaaacactacAACTGCAAGGGGAAAAAGGCAAGTAATATAGAAGACCTGCTAACTAAAGTTCATCTTAGGTATATGGCACAGCATAGATTCAAAGCACAGAGGAAAAATGGGCTCAAtgcaatgttatttttgttttgcagattaAATTAGTTTGTGAAATGAA

Function

NR:

description
PREDICTED: zinc finger protein 286A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237470.1 True 2180 mRNA 0.37 2 17711195 17713523

Neighbor

gene id symbol gene type direction distance location
tmem165 tmem165,LOC107683960,LOC107665411,LOC107718400,LOC107755243,LOC107601909,LOC107573988 coding downstream 74906 17631493 ~ 17636289 (-)
daam1b daam1b,LOC107701451,LOC107755211,LOC107718401,LOC108412077 coding downstream 158849 17488260 ~ 17552346 (-)
LOC122343418 LOC107683962,LOC107701452,LOC107755208,LOC107601897,LOC107568118,LOC107718425 coding downstream 228440 17411018 ~ 17482755 (-)
btbd6b btbd6b,LOC107589075,LOC107755235,LOC107718408,LOC107560384,LOC107701487,LOC107683969 coding downstream 567915 17138065 ~ 17143280 (-)
LOC122342663 NA coding downstream 580930 17123907 ~ 17130265 (-)
LOC122343083 NA coding upstream 223 17713746 ~ 17717051 (-)
LOC122343057 NA coding upstream 4241 17717764 ~ 17719790 (-)
LOC122342227 NA coding upstream 6625 17720148 ~ 17726796 (-)
LOC122343038 LOC107698808,LOC107743352 coding upstream 14999 17728522 ~ 17731397 (-)
ckap2l NA coding upstream 126541 17840064 ~ 17851149 (-)
G29408 LOC107755246,LOC107683958,LOC107718397 non-coding downstream 9822 17699424 ~ 17701373 (-)
G29388 NA non-coding downstream 68558 17642379 ~ 17642637 (-)
G29273 NA non-coding downstream 157231 17553762 ~ 17553964 (-)
G29212 NA non-coding downstream 361689 17349289 ~ 17349506 (-)
G29179 NA non-coding downstream 491742 17219151 ~ 17219453 (-)
LOC122343157 tatdn1 non-coding upstream 18880 17732403 ~ 17733334 (-)
G29420 NA non-coding upstream 36288 17749811 ~ 17814034 (-)
G29425 NA non-coding upstream 82549 17796072 ~ 17805409 (-)
G29440 NA non-coding upstream 104039 17817562 ~ 17817933 (-)
G29442 LOC107599601 non-coding upstream 105837 17819360 ~ 17822470 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other downstream 72453 17637023 ~ 17638742 (-)
xrcc3 xrcc3,LOC107755221,LOC107683971,LOC107560377 other downstream 589066 17118343 ~ 17122129 (-)
G29135 NA other downstream 693372 17006927 ~ 17017823 (-)
prkchb prkchb,LOC107743988,LOC107697294,LOC107701491,LOC107718442,LOC107589067,LOC107563690 other downstream 810900 16886153 ~ 16900295 (-)
G29022 chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496 other downstream 1002235 16707774 ~ 16708960 (-)
LOC122342228 scgn,LOC107693759,LOC107757885,LOC107669120,LOC107714763,LOC107747999,LOC107663245 other upstream 21083 17734606 ~ 17744543 (-)
G29417 NA other upstream 21827 17735350 ~ 17736274 (-)
G29473 NA other upstream 257082 17970605 ~ 17979922 (-)
G29653 LOC107663329,LOC107575399,LOC107749046,LOC107758217,LOC107576964,LOC107665206,LOC107571858,LOC107671223,LOC107576424 other upstream 695037 18408560 ~ 18428343 (-)
LOC122343054 NA other upstream 941721 18655244 ~ 18661653 (-)

Expression


Co-expression Network