rab21 (rab21,zgc:154045,LOC107687573,LOC107690748,LOC106609839)


Basic Information

Item Value
gene id rab21
gene name rab21,zgc:154045,LOC107687573,LOC107690748,LOC106609839
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18547531 ~ 18554389 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237471.1
CACCTGACCCCTCTCCGGAACGTCACGGAACGGAACGCCATTAGATTGATGGCGGAGCTCCGTCGGGAGCCAGGCAGCGTTTAACAGGGGACTCGGCGCGAGGACTTCACGCGAAGGCGGCCGTTTGCGTTCGTCTGCGGATCTCTATGGCCGCTGTGATCGGCTAAGGGCCaggctttgtttgtttgtttgtttttgcgtCGGGCCGAGAGTTTGAGCATGGCGGCGGCCGGAGGGAAGACGTACTCGTTCAAGGTGGTGCTGCTCGGGGAGGGCTGCGTCGGCAAAACGTCGCTGGTGTTGCGATACTGCGAGAACAAATTCAACGACAAACACATCACCACTCTTCAGGCGTCGTTTCTCACGAAAAAGCTCAACATCACGGGAAAGCGAGTGAATCTGGCTATATGGGACACCGCCGGTCAGGAGCGTTTCCATGCCCTTGGACCCATCTACTACAGAGATTCCAACGGCGCGATACTGGTGTACGACGTCACAGACGAGGACTCGTTTCAGAAGGTGAAGAACTGGGTAAAAGAGTTAAGGAAAATGTTGGGGAATGAGATCTGTTTATGTATAGTAGgcaATAAAATTGACCTGGAAAAAGAGCGACATGTTTCGGTGGAGGAAGCAGAGGGatatgcCGAGTCGGTGGGTGCAAAACACTATCACACGTCAGCCAAATTAAACAAAGGCATCGAGGAGCTGTTTCTGGACCTGTGTAAACGCATGATGGAGACGGCTCAGGCGGAGGAGAGGTCGAGGGGGAACGGCGCGAGTCACACGAGCACAGCCCGGAGAGGCGTACAGATAGTCGACGACGAGCCCCAGACTGCCATGCCCGCCGGAGGCTGCTGTACATCCGGCTAAACACACTTACCCCCCTTTTTACCCCCCTCCCGGGACTGATAACGGCCTCTCTCGCCCTCCTCTGTGTAAAAACTGCCACTTCCCACAGCTACACTCACCTGCGACCGCTCTACAGCTCTGTTAAGTCATTTCTTTAACGGTTTGTCCCTTATTGGAAGGGTTGATTTGTAACTCCACCCTTCGACCGGCGGACTCTAGGGGCCAAAAGATGCCAGATCGACCTGTGTTGAGAACATTCGCAAATTCCTACAAATAGGTACCAAACAATAACGCCCGGtcttctaaaacacacacatgcactgatTAATTTCCCTAACAATCTGATACCTtagcactttttcttttttttttttttgttgtttctttcgGCAAGGCGTTGTGCATGTAGAATCTTTAAAATCCTAGTTTTATTTTacgtctgaaaaaaaaaaagagaaattctttattatttaataacttatttACAATTTCATCAAGCGTCTACGTGTCCAAAGACCTTCGTAATTCTTGTAATCAACAGGCTTGTCGTTCTTCTACGGTCTCGTTCTTCTGTCGTTCATATCTTCTGTATCTttcttaaaaatgcaacattaaaatCCATCTAGAACATTTAAACTCTTTGTAGgttttgtcttttctcttcAGCTTGCCAATTTAACGCTATCCGGATTTCgaaatggtaaaataaataaattgtgttgtTCGCAtgctacatttttgttttttttatatatagggAAAACATGCGATACTGTGTGCTTTACTTTTCAAGCTATCGATTGCAACGGCGAGTCGGAAAAGTGtacaatattcaatattaatgtTGTATGAATGTATAACGAATAATAATGGCTGTGGTAAAtgcttttttgggatttgtgtggttttttttaactgtaacttTTACGATGTTAATTGTCCCCCCACCGCACCTCCCCGAGACCCGAACGATGGGacaatttttgaaaatactaataatttcgACAACCGCATCACCTGTAAACACTGAGGTGCAGCTGTGAGCCTTCTGtgcctttaaataaaagtgtctaGATTGACCCACC

Function

symbol description
rab21 Predicted to enable GTPase activity. Predicted to be involved in intracellular protein transport. Predicted to act upstream of or within Rab protein signal transduction and protein transport. Predicted to be located in several cellular components, including bounding membrane of organelle; cleavage furrow; and endoplasmic reticulum membrane. Predicted to be active in early endosome. Orthologous to human RAB21 (RAB21, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-21

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07890 RAB21; Ras-related protein Rab-21

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237471.1 True 1934 mRNA 0.46 7 18547531 18554389

Neighbor

gene id symbol gene type direction distance location
LOC122343129 LOC107565648,LOC107660365,LOC106563294,LOC108274068,LOC107733731 coding upstream 325211 18218716 ~ 18222320 (+)
lman2la lman2l,lman2la,LOC107660366,LOC107565653,LOC102299173 coding upstream 336638 18202735 ~ 18210893 (+)
ddx54 ddx54,LOC107729212,LOC107745378,LOC107674901,LOC107597958,LOC107566861,LOC102784149 coding upstream 549873 17984993 ~ 17997658 (+)
abl1 abl1,LOC107670387,LOC107597931,LOC107674916,LOC107566858 coding upstream 584012 17939684 ~ 17963519 (+)
exosc2 exosc2,exos2 coding upstream 609615 17933305 ~ 17937916 (+)
trim24 trim24,LOC107709964,LOC107687572,LOC107747644,LOC107562152,LOC107690747 coding downstream 2180 18556569 ~ 18565366 (+)
LOC122343002 NA coding downstream 65162 18619551 ~ 18627271 (+)
LOC122343000 LOC107554745,LOC107700104,LOC107746770 coding downstream 73036 18627425 ~ 18632437 (+)
si:ch211-166e11.5 LOC107685387,LOC107554747,LOC107712904 coding downstream 79720 18634109 ~ 18646928 (+)
LOC122342234 LOC107685386,LOC107554769,LOC107712902 coding downstream 92409 18646798 ~ 18655105 (+)
G29548 NA non-coding upstream 81694 18441631 ~ 18465837 (+)
G29544 NA non-coding upstream 86936 18435643 ~ 18460595 (+)
G29484 tbx3a,LOC107742157,LOC107597930,LOC107687999,LOC107728866 non-coding upstream 486615 18059335 ~ 18060916 (+)
G29476 NA non-coding upstream 545052 17999597 ~ 18002479 (+)
G29320 NA non-coding upstream 581780 17884328 ~ 17965751 (+)
LOC122343196 NA non-coding downstream 37058 18591447 ~ 18594116 (+)
G29591 NA non-coding downstream 46039 18600428 ~ 18603316 (+)
G29600 NA non-coding downstream 108471 18662860 ~ 18665083 (+)
G29627 NA non-coding downstream 230656 18785045 ~ 18785246 (+)
G29633 NA non-coding downstream 260494 18814883 ~ 18815278 (+)
G29545 NA other upstream 86214 18436460 ~ 18461317 (+)
G29526 NA other upstream 246342 18300415 ~ 18301189 (+)
atp5mj NA other upstream 1506701 17038419 ~ 17040830 (+)
G28982 NA other upstream 2073150 16473898 ~ 16474381 (+)
G28899 NA other upstream 2561805 15985219 ~ 15985726 (+)
G29642 NA other downstream 328790 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 735831 19290220 ~ 19342911 (+)
G29835 NA other downstream 1176873 19731262 ~ 19786128 (+)
LOC122343071 NA other downstream 1191345 19745734 ~ 19750074 (+)
LOC122343063 NA other downstream 1483544 20037933 ~ 20043453 (+)

Expression


Co-expression Network