LOC122343128 (LOC107728228,LOC107569032,LOC107685875,LOC107705465,LOC107574018)


Basic Information

Item Value
gene id LOC122343128
gene name LOC107728228,LOC107569032,LOC107685875,LOC107705465,LOC107574018
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23816849 ~ 23929534 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237481.1
taaagaaatggaaatatccagcgatgaatataaagtgttgttcatctttgatggtttgGACGAGTGTCGTCTGTCTCTGGACTTTAAGAGTAAAGTGAAACTGTGTAATATATCTGAGTCAGCCTCAGTGgatgtgctgctgatgaacctgattgtggggaatctgcttccctctgctctcatctggatcacctccagaccagcagcagctgatctcGTCCCCTCTGAGTGCGTCCATCGAGTGACAGAGGTACGAGGCTTCAATGAGCCACAGAAGGAGGAATACTTCAGGAAGAGGATCAGTGATCAGAGTGTGGTCGACAGGATCATCTCACACCTGAAGTCCTCCAGGAGCCTCttcatcatgtgtcacatcccagtcttctgctggatctcagccactGTTCTTGAGAAGATCTTGAGTCGAGCAGAGACTGGAGAGATTCCTAAGActctcactcaaatgtacacacacttcctgatcctTCAGACCAACATCAAACGTGAGAAAGACTATGGGAAGATCTACGTGACAGATGAAGACATGATCCTCAAACTGGGGAAACTTGCTTTCCAGCAGCTTGTAAAGGAAACCTGATCTTCTATGATGAAGACCTTAGAGAGTGTGGCATTGATGAGATAGAAGCATCAGTTTATTCAGGACtgtgcactcagatcttcagagaggagcTGGGATTGTTTCTGGGAAAGTTTTCTGCTTCGTTCACCTGAGCCTTCAGGAACATCTAGCAGCTCTATATGTTCATCTCTCTTTTACAAACAGGAAGAGAAATGTTTTCAACCAAACCAAACACAGACTATTGTCCAAgatattttaccaaaataaatataattcattatctGAGCTGCATCAGGGAGCTGTGAATGAGGTTCTAAAGAGTAAGAATGGACATTTGGATCTTTTCCTGAGGTTTCTTCTGGGTCTCTCAGTGGAGTCCAATCAGACTCTCTTAAGAAAACTACTgacacagacaggaagctgctcctacaacaaagagaaaacagttCAGTTCATCAAAGAGAAGATCAGGAAGAATCAGAGAGATTCAAAtaaatccatcaatctgtttaactgtctgaatgaactgggtgatgattcactgatgcaGGAGATTCAGGGTTATCTGAAATCTGGAGGAATAAGAGAAACCAAACTCTCCTCTTCACAGTGGTCAGCTCTGGTTTATGTGTTGCTGACATCAGAGCAGAAGATGGATGTTTTGATCTACAACAGTTTATTGGAGAACAACATACAGGAGATGAAGTTCTTCAGTATCTGTTACCTGTGGTTAAAGAATCCAGATCAGTTTGGCTATGTGGATGCAAACTCACTGCTCAGTCTGTTGacgtttgtcttcagttttacaatcctcaaactcaaacatcctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgctctctgaaggactgaagagtccaaactgtcatctggagattctgagGCTATGTGGATGCAATCTCACTGCTCAGTcttgtgaaagtttgtcttcagttttacaatcctcaaactcaaacatcctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgctctctg
>XM_043237483.1
taaagaaatggaaatatccagcgatgaatataaagtgttgttcatctttgatggtttgGACGAGTGTCGTCTGTCTCTGGACTTTAAGAGTAAAGTGAAACTGTGTAATATATCTGAGTCAGCCTCAGTGgatgtgctgctgatgaacctgattgtggggaatctgcttccctctgctctcatctggatcacctccagaccagcagcagctgatctcGTCCCCTCTGAGTGCGTCCATCGAGTGACAGAGGTACGAGGCTTCAATGAGCCACAGAAGGAGGAATACTTCAGGAAGAGGATCAGTGATCAGAGTGTGGTCGACAGGATCATCTCACACCTGAAGTCCTCCAGGAGCCTCttcatcatgtgtcacatcccagtcttctgctggatctcagccactGTTCTTGAGAAGATCTTGAGTCGAGCAGAGACTGGAGAGATTCCTAAGActctcactcaaatgtacacacacttcctgatcctTCAGACCAACATCAAACGTGAGAAAGACTATGGGAAGATCTACGTGACAGATGAAGACATGATCCTCAAACTGGGGAAACTTGCTTTCCAGCAGCTTGTAAAGGAAACCTGATCTTCTATGATGAAGACCTTAGAGAGTGTGGCATTGATGAGATAGAAGCATCAGTTTATTCAGGACtgtgcactcagatcttcagagaggagcTGGGATTGTTTCTGGGAAAGTTTTCTGCTTCGTTCACCTGAGCCTTCAGGAACATCTAGCAGCTCTATATGTTCATCTCTCTTTTACAAACAGGAAGAGAAATGTTTTCAACCAAACCAAACACAGACTATTGTCCAAgatattttaccaaaataaatataattcattatctGAGCTGCATCAGGGAGCTGTGAATGAGGTTCTAAAGAGTAAGAATGGACATTTGGATCTTTTCCTGAGGTTTCTTCTGGGTCTCTCAGTGGAGTCCAATCAGACTCTCTTAAGAAAACTACTgacacagacaggaagctgctcctacaacaaagagaaaacagttCAGTTCATCAAAGAGAAGATCAGGAAGAATCAGAGAGATTCAAAtaaatccatcaatctgtttaactgtctgaatgaactgggtgatgattcactgatgcaGGAGATTCAGGGTTATCTGAAATCTGGAGGAATAAGAGAAACCAAACTCTCCTCTTCACAGTGGTCAGCTCTGGTTTATGTGTTGCTGACATCAGAGCAGAAGATGGATGTTTTGATCTACAACAGTTTATTGGAGAACAACATACAGGAGATGAAGTTCTTCAGTATCTGTTACCTGTGGTTAAAGAATCCAGATCAGTTTGGCTATGTGGATGCAATCTCACTGCTCAGTcttgtgaaagtttgtcttcagttttacaatcctcaaactcaaacatcctgagagagctg

Function

NR:

description
PREDICTED: protein NLRC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237481.1 True 1645 mRNA 0.43 3 23816849 23929534
XM_043237483.1 False 1420 mRNA 0.43 2 23816898 23929534

Neighbor

gene id symbol gene type direction distance location
LOC122343107 LOC107566978,LOC107575457,LOC107561645,LOC107655025 coding downstream 88931 23725752 ~ 23727918 (-)
LOC122343073 NA coding downstream 557530 23256365 ~ 23259319 (-)
LOC122342325 LOC107741456 coding downstream 566235 23240075 ~ 23250614 (-)
LOC122342324 NA coding downstream 579769 23230042 ~ 23237080 (-)
LOC122342323 NA coding downstream 597676 23201470 ~ 23219173 (-)
LOC122342994 LOC107749047,LOC107685875,LOC107728228,LOC107570416,LOC107671223 coding upstream 278121 24207655 ~ 24220008 (-)
LOC122343156 LOC107674852,LOC105007321,LOC107551422,LOC103361099,LOC107732279,LOC107677819,LOC107725800 coding upstream 335815 24265349 ~ 24266607 (-)
LOC122342338 NA coding upstream 383308 24312842 ~ 24319112 (-)
ckap4 NA coding upstream 547462 24476996 ~ 24479914 (-)
LOC122343108 LOC107677819,LOC107725800 coding upstream 555828 24485362 ~ 24492499 (-)
LOC122343184 NA non-coding downstream 36883 23767277 ~ 23779966 (-)
LOC122343194 NA non-coding downstream 73329 23732753 ~ 23743520 (-)
LOC122343201 NA non-coding downstream 84853 23728035 ~ 23731996 (-)
LOC122343181 NA non-coding downstream 140891 23674126 ~ 23675958 (-)
LOC122343190 NA non-coding downstream 320098 23494326 ~ 23496751 (-)
G31062 NA non-coding upstream 73332 24002866 ~ 24009615 (-)
G31063 NA non-coding upstream 74158 24003692 ~ 24010050 (-)
LOC122343187 NA non-coding upstream 75439 24004973 ~ 24006236 (-)
G31064 NA non-coding upstream 76710 24006244 ~ 24007202 (-)
G31072 NA non-coding upstream 106815 24036349 ~ 24036751 (-)
G31050 NA other downstream 45081 23745486 ~ 23771768 (-)
G31017 NA other downstream 270480 23478525 ~ 23546369 (-)
LOC122342328 LOC107671223,LOC107685875,LOC107728228,LOC107749047,LOC107553362,LOC107574018,LOC107569032,LOC107575215 other downstream 379834 23416891 ~ 23437015 (-)
G30450 NA other downstream 1571689 22128454 ~ 22245160 (-)
G30457 NA other downstream 1600379 22216035 ~ 22216470 (-)
G31091 kdm5a,LOC107710764,LOC107685890,LOC107693604 other upstream 180690 24110224 ~ 24110673 (-)
G31134 NA other upstream 374562 24304096 ~ 24497596 (-)
G31120 NA other upstream 376967 24306501 ~ 24495178 (-)
LOC122342340 NA other upstream 394436 24323970 ~ 24327263 (-)
LOC122342407 LOC101068103,LOC105418166,LOC106522608,LOC108412963,LOC105419408,LOC108431938,LOC107395447,LOC106674638 other upstream 824522 24754056 ~ 24760786 (-)

Expression


Co-expression Network