Item | Value |
---|---|
gene id | CI01000004_10169407_10212947 |
gene name | CDH18 |
gene type | coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000004 |
NCBI id | null |
chromosome length | 17451736 |
location | 10169407 ~ 10213189 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
symbol | description |
---|---|
cdh18 | Predicted to enable cadherin binding activity and calcium ion binding activity. Predicted to be involved in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules; cell morphogenesis; and cell-cell junction organization. Predicted to be located in plasma membrane. Predicted to be part of catenin complex. Predicted to be active in adherens junction. |
id | name | namespace |
---|---|---|
GO:0034332 | adherens junction organization | biological_process |
id | description |
---|---|
K06805 | CDH18; cadherin 18, type 2 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
CI01000004_10169407_10212947.mRNA | True | 3449 | mRNA | 0.50 | 18 | 10169407 | 10213189 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000004_10058538_10090881 | CDH12A | coding | upstream | 78358 | 10058538 ~ 10091049 (+) |
CI01000004_09980195_09995816 | CDH10A | coding | upstream | 173514 | 9980195 ~ 9995893 (+) |
CI01000004_09684489_09685469 | MC4R | coding | upstream | 483395 | 9684489 ~ 9686012 (+) |
CI01000004_09627968_09635256 | RNF152 | coding | upstream | 533606 | 9627968 ~ 9635801 (+) |
CI01000004_09623579_09626179 | BUC | coding | upstream | 542806 | 9623579 ~ 9626601 (+) |
CI01000004_10376389_10423302 | DLGAP1A, DLGAP1 | coding | downstream | 163200 | 10376389 ~ 10423302 (+) |
CI01000004_10434104_10435287 | PTF1A | coding | downstream | 218644 | 10431833 ~ 10435569 (+) |
CI01000004_10514814_10550774 | NA | coding | downstream | 301625 | 10514814 ~ 10550920 (+) |
CI01000004_10582152_10586349 | HTR5AB, HTR5A, HTR5AA | coding | downstream | 368932 | 10582121 ~ 10586553 (+) |
CI01000004_10610634_10613290 | ENG2B | coding | downstream | 396591 | 10609780 ~ 10613630 (+) |
G30515 | NA | non-coding | upstream | 262861 | 9906238 ~ 9906546 (+) |
G30505 | NA | non-coding | upstream | 279651 | 9889529 ~ 9889756 (+) |
G30447 | NA | non-coding | upstream | 353322 | 9815811 ~ 9816085 (+) |
G30395 | NA | non-coding | upstream | 406113 | 9759819 ~ 9763294 (+) |
G30240 | NA | non-coding | upstream | 463133 | 9702825 ~ 9706274 (+) |
G30688 | NA | non-coding | downstream | 223041 | 10436230 ~ 10447737 (+) |
G30780 | NA | non-coding | downstream | 240413 | 10453602 ~ 10454260 (+) |
G30787 | NA | non-coding | downstream | 261561 | 10474750 ~ 10474951 (+) |
G30689 | NA | non-coding | downstream | 480728 | 10693917 ~ 10697207 (+) |
CI01000004_08976512_08980033 | TTPA | other | upstream | 1188423 | 8976254 ~ 8980984 (+) |
G28859 | NA | other | upstream | 1569804 | 8599235 ~ 8599603 (+) |
CI01000004_08414451_08436256 | NA | other | upstream | 1718180 | 8414316 ~ 8439933 (+) |
CI01000004_07654234_07655677 | MRPL34 | other | upstream | 2513024 | 7654234 ~ 7656383 (+) |
CI01000004_06571261_06572539 | SEP15 | other | upstream | 3594986 | 6570771 ~ 6572667 (+) |
G30797 | NA | other | downstream | 284187 | 10497376 ~ 10497788 (+) |
G31710 | NA | other | downstream | 1424062 | 11637251 ~ 11642400 (+) |
CI01000004_11666900_11667179 | NA | other | downstream | 1451584 | 11666900 ~ 11667659 (+) |
G31865 | NA | other | downstream | 1978941 | 12192130 ~ 12197418 (+) |
CI01000004_12646972_12652534 | NA | other | downstream | 2429565 | 12646838 ~ 12652570 (+) |