CI01000004_10169407_10212947 (CDH18)



Basic Information


Item Value
gene id CI01000004_10169407_10212947
gene name CDH18
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10169407 ~ 10213189 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000004_10169407_10212947.mRNA
ATGTTTCGTGGAAATCTGCCATTGCCTCCAAGGAGCTATGGGACCCCTTCTCCACCCAGCCCCACGTTCACCCACAACCAGACCAAACTGCCCGATGGCGACAAGGACTCGCATCATCGTCCCAAGCGAGGCTGGATCTGGAATCAGTTCTTTGTTTTGGAAGAGCACATTGGGCCGGATGCCCAGTACGTGGGGAAGTTACACTCAAACTCAGACAAAGGTGATGGCTCCGTCCAGTATCTACTCTCTGGAGAAGGTGCCGGTACCATATTCATAATCAACGAATTAACGGGAGATATTCATGCAAAGAAAAGCCTGGACAGAGAAAAGAAGAGCCATTATGTGCTCCACGCTCGGGCCGTCGACCGCTTCACCAACAGAGCCGTGGAACCCGAGTCCGAATTCATTATCAAGGTCCAGGATGTGAACGACAACGCCCCCAAATTCCCAGACGGCCCTTTTTCAGCCTCCGTGCCTGAGATGGCAGACATCGGAACGTCGGTATTCCAGATCACTGCCACAGACGCCGATGATCCCACCTACGGAAACAGTGCCAAGATCGTATACAGCATTCTCCAAGGCCAGCCCTTCTTCACCGTTGACCCCAAAACCGTGGTGGTGTTTGTTTATGTCAAGTTGAATGTGCCTGGAGGGTGTTTGTCCCAGTTTGAAAGCGCCAACCTGCAGAGTGTTTATCCCATGATAGAGCTTATTTGGTGCAGGATAAATTTGCTTGGCTTATATACGTTTGAGCGTGCCAGGGTAGTGTGTGTAAATGTCTATATCAGCAGTGTACAAGAGCCTTGTCAGCAACAGCATGAGCTGCTGACCCAAGGGACTCAGCTTAGCACCACTACATACTTTCATCCCTCAGATATCCTCCACAAAACCACGCCAATTTACACATGGGTGGTGTCTGCTCTCAATGGGCTGGGTGCAATCTCTATGACATTCTCTGGGGCTGAACACTGGCGTGTGTTTATTTGTTCTGGCGGATTGAGGGAACAGTTGGAGCAGATGGCAGACTTTGCTTTAGAGTTGTGGAGTATGCGGGAGATGATCACCAGCATGCTTTTTGCACATGTGTATGTGCACATCTGGACAGGAAGGTTCATGCTAAGGGCTTACACCACATATGAGCAGTGCATGGAGGTGAGGGGTGTCATCAGGACAGCTTTGCCGAACATGGACAGAGAAACTAGAGAGATGTACTCCGTCATCATCCAAGCCAAAGACATGGCCGGCTCTGTTGGTGGTCTGTCCGGATCTACCACAGTCAACATCTCACTGACAGACGTCAATGACAATCCACCACGATTCCCTCAAAAGAACTATCAGCTTTATGTGCCAGAATCTGCTGAGGTAGGGAAAGCAGTTGGTAAAATCAAAGCGAACGATGAAGACCTTGGCGTCAACGCTGAGATGACCTACAGAATTACCAATGAAGAAGGAGCTGCCATGTTTTCCATCTCTACAGACAGTGACAAGAGAGAAGGAATCATCTCCCTCAGAAAGCCTCTGGACTATGAGAAGAAGAAGGCATACTCTTTGAACATCGAAGGTGTCAACACCCATCTGGATCCTCGTTTTTCTTACCTGGGCCCTTTCAAAGACACTACCACGCTCAAGCTCATCATCGGGGATGTTGATGAGGCTCCGGTGTTTACTATGGACTACTATATCATGGATGTGTATGAAAACACTCCAGCTGGGACAGAGGTTGGCATGGTAACTGCTCAAGACCCGGACAGCACTAGAAGCAAAGTCAGGTATTCCATTGACCAAAATGCAGAAGGTGATGCACTTTTCAGCATTGACGTTGACAGTGGACTCGTTACAACCACCAGGAGTCTAGACCGAGAAGAGGTAGCCTGGCACAACATCACAGTGATGGCTTCAGAGATTGACAATCCAAATCTGGTGAGCTATGTACCAGTCACAGTCCAGGTCTTGGATGTCAATGACAATGCCCCCTATATTGCCACAGACAGCGCTCTGGTTGTGTGTGAAGGCTCCAAGGCAGGCCAGCCAGTAAAAATGTTGATGCAGCTCATTCAGACCATCAGGGCCACAGACAAGGACAACTTCGCCAATGGACGGTTCACCTTTGCTCTACCAGAAGACCTTCCAGCGAATCCAAACTTTACTCTGAAGGACAATGAAGTTCATATTCTGAATCTAGGAAGCATTCGTAATGAAGCTCTCTACTGGTTCAGTAGAATGGTGCTGTGGCTGTCGTTATATAGCCGCTGTCATTTCAACAGCGAAGAATCCAAAAATCATATCAGACAGCTTGAAAATGAAGTAACAGAATGCAATATTCAAAAAGCTGTTCTCCATTCTCGGAGGCGACTGTCGAGGATGGGGAGCGAATTGTTTTGTTGGCTTCTGTTGTACGCCGTCGTCATGCATGCAGCCAGCGAGAATAAACCTCTGCTCTCTCTGACAGATAGCAGCGCGAGCGTGTTGGCGCGCAGGCAAGGCTTCAGCCAGGCAGAACAGGAGCTGTACCAGCTGCCCGTGGTTGTGTGGGATGGAGGAGAGCCCCTTCTCAGCAGCACCAGCACGGTTACGCTCAGGGTGTGTCCGTGCCAACGCGGGGCCAGAATGCCAGTGTGCAGGGCTCAAGCCTTCCTGTCCTCGGCCGGTCTCAGCACTGGAGCCCTCATTGCCATCCTGCTATGTGTGCTCATCCTCTTGGCCATCGTGGTTCTGTTTGTCACCCTGCGTAGCAAGAAGAGCAAAAAGGAGCCTCTGATCATCTCGTCGGAGGATATCAGAGAGAACGTAGTCACGTACGATGACGAGGGGGGAGGCGAGGAAGACACAGAGGCCTTTGACATAGCGGCGCTGAGGAACCCCGCGGCAGCCGAAGAGATGAGAATGAGGAAGGACCTGCAGTCGGAGGTGTGGAGGGCAATGGGAACGGAGGCTCTCAGCCCGTCATTGACCGTCATGGATGAGGACATCCATGAGGTGATTAAGCTCAAAGTGGTCGAGGCGGACCGGGACACGAGCGGCCCTCCTTACGATTCTCTTCAGACGTATGCTTACGAGGGCCGCGGCTCCCCGTCTGGTTCCATCAGCTCTCTGGACCTGCCGGAACTTCAGTCGGAGCTGGACCTCAGTGAGGTAGAAAACTGGGGCCCTGAGGTACAAATACTTAGCAGAGTCTTTCAAGAGAAAGGCCAGCAGCACGCCCCCTAATGGCTGCGCATGTTCCGTCAACCAGAAGTTGTGTGTCGTTTCCCTGATGTCTGGTCAAATGGGACCGCAGTGAAGACTGAAGTTTTTTTGTCATCCAGTTTTGCTGTGGGATTATTTGACTGTTGTTTTTCACTGGCCTCTACAAGTGGAAGTTGATTTTTGAAGAAAAAGTTTAAAATTGAGAAAAAAATGAGAACTCATAAAGGAAGCTATTTTCCCTGGTGTATATTTTCTATTGCTTA

Function


symbol description
cdh18 Predicted to enable cadherin binding activity and calcium ion binding activity. Predicted to be involved in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules; cell morphogenesis; and cell-cell junction organization. Predicted to be located in plasma membrane. Predicted to be part of catenin complex. Predicted to be active in adherens junction.

GO:

id name namespace
GO:0034332 adherens junction organization biological_process

KEGG:

id description
K06805 CDH18; cadherin 18, type 2

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000004_10169407_10212947.mRNA True 3449 mRNA 0.50 18 10169407 10213189
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Neighbor


gene id symbol gene type direction distance location
CI01000004_10058538_10090881 CDH12A coding upstream 78358 10058538 ~ 10091049 (+)
CI01000004_09980195_09995816 CDH10A coding upstream 173514 9980195 ~ 9995893 (+)
CI01000004_09684489_09685469 MC4R coding upstream 483395 9684489 ~ 9686012 (+)
CI01000004_09627968_09635256 RNF152 coding upstream 533606 9627968 ~ 9635801 (+)
CI01000004_09623579_09626179 BUC coding upstream 542806 9623579 ~ 9626601 (+)
CI01000004_10376389_10423302 DLGAP1A, DLGAP1 coding downstream 163200 10376389 ~ 10423302 (+)
CI01000004_10434104_10435287 PTF1A coding downstream 218644 10431833 ~ 10435569 (+)
CI01000004_10514814_10550774 NA coding downstream 301625 10514814 ~ 10550920 (+)
CI01000004_10582152_10586349 HTR5AB, HTR5A, HTR5AA coding downstream 368932 10582121 ~ 10586553 (+)
CI01000004_10610634_10613290 ENG2B coding downstream 396591 10609780 ~ 10613630 (+)
G30515 NA non-coding upstream 262861 9906238 ~ 9906546 (+)
G30505 NA non-coding upstream 279651 9889529 ~ 9889756 (+)
G30447 NA non-coding upstream 353322 9815811 ~ 9816085 (+)
G30395 NA non-coding upstream 406113 9759819 ~ 9763294 (+)
G30240 NA non-coding upstream 463133 9702825 ~ 9706274 (+)
G30688 NA non-coding downstream 223041 10436230 ~ 10447737 (+)
G30780 NA non-coding downstream 240413 10453602 ~ 10454260 (+)
G30787 NA non-coding downstream 261561 10474750 ~ 10474951 (+)
G30689 NA non-coding downstream 480728 10693917 ~ 10697207 (+)
CI01000004_08976512_08980033 TTPA other upstream 1188423 8976254 ~ 8980984 (+)
G28859 NA other upstream 1569804 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 1718180 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 2513024 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 3594986 6570771 ~ 6572667 (+)
G30797 NA other downstream 284187 10497376 ~ 10497788 (+)
G31710 NA other downstream 1424062 11637251 ~ 11642400 (+)
CI01000004_11666900_11667179 NA other downstream 1451584 11666900 ~ 11667659 (+)
G31865 NA other downstream 1978941 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 2429565 12646838 ~ 12652570 (+)

Expression


CI01000004_10169407_10212947(CDH18) Expression in PRJCA010000

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The chart has 1 Y axis displaying values. Range: 0 to 2.
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CI01000004_10169407_10212947(CDH18) Expression in each Bioproject

Bar chart with 34 bars.
CI01000004_10169407_10212947(CDH18) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network