LOC122343138 (si:ch211-133h13.1,LOC107574515,LOC107574820)


Basic Information

Item Value
gene id LOC122343138
gene name si:ch211-133h13.1,LOC107574515,LOC107574820
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22548617 ~ 22561763 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237494.1
atctcactgcacagtcttgtgagagtttgtcttcagttttacaatcctcaaacacTGTCCTGAGAGAACTGGACCTGAGTAGcaatgatctgcaggattcaggagtgaagctgctctctgaaggactgaagagtccaaactcaAAGCTGGAGATTTTAAGATTTTCCATATGTAATCTCACTACACAGTCTTGTGagagtttgtcttcagttttacaatcctcaaactctgtcctgagagAACTGGACCTGAGTagcaatgacctgcaggattcaggagtgaagctgctttctgaaggactgaagagtttAAACTCCAAGCTGGAGACAATGAGgttgtctggctgcatggtgacagaggaaggctgtaattatttgtcttcagctctgacttcaaacccctcacacctgaaagagctggatctgagctacaatcatcctggagattcaggagtgaagctgctctctgaaaaactggaggatccaaactgctcACTGAATAAACTCAACATTGATCATGGAGGAGAATCCAGGATTACAACAGGACTGAAGAAATatgagtgttttctcacactggatccaaacacagcacacactaaaCTCAGACTGTCTGAGGACAACAGAAGAGTAACATTTGTGTTTGAGTCTCAGccatatcctgatcatccagacagatttaaAATGTCTCAGGTGTTGTGTGGAGAGagtgtgtggacgctgttactgggagactgagtggagTGGGTTTGTGGATATATCGGtgtcatataagaacatcagcagaAGGAGAggtgatgagtgtgtgtttggacgtaatgatcagtcctggagtttgatctGCTCTCGCTACAGTTACTCATTCATACACAATAACAGAGAGACTAATTtctctgtgaagcccatcaTCATCAGCAGAAGACCAGAAGTGTATGGTAATGATAATATCTATAGAACAGGAGTGTATTTGGATGAGAGCGCAGGGATTCTGTCGcttctacagcgtctctgacacaatgagactcatccacacagtccagaccacattcactcagacactctgtcctgggttttatcttttttttggatcatcagtgaaactatgttgatgaatcagaagagactgagCAGAGATTCTACCCATAATGCTTTGAGCATGATTGATGAAGAACATGTAATcaatttctgttatttttgtatagaaatacaaatactaaaaaaaaaaaagataaatcgACTTGATATCAGATTTTAATCAATGTTTGTATCATGAATATAACTGATTTTTGACAAGAATGAAATGAGCTTCTggctttataaaatattaaattataaattaaccta

Function

symbol description
si:ch211-133h13.1 Predicted to be involved in intracellular signal transduction.

NR:

description
NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237494.1 True 1340 mRNA 0.40 5 22548617 22561763

Neighbor

gene id symbol gene type direction distance location
LOC122343018 LOC107705900 coding upstream 102339 22434054 ~ 22446278 (+)
LOC122342312 NA coding upstream 142795 22404053 ~ 22405822 (+)
LOC122343041 zbtb24,LOC107736039 coding upstream 441160 22105236 ~ 22107457 (+)
LOC122343067 NA coding upstream 443685 22103318 ~ 22104932 (+)
LOC122342305 LOC107697548,LOC107574116,LOC107758214 coding upstream 706387 21841181 ~ 21842230 (+)
LOC122342965 NA coding downstream 51352 22613115 ~ 22621886 (+)
LOC122343101 NA coding downstream 123939 22685702 ~ 22689679 (+)
LOC122342996 LOC107572920,LOC107713771,LOC107575181,LOC107684374,LOC107677802 coding downstream 134037 22695800 ~ 22706494 (+)
LOC122342997 LOC107572920,LOC107713771,LOC107575181,LOC107684374,LOC107677802 coding downstream 178197 22739960 ~ 22748620 (+)
LOC122343008 LOC107575457 coding downstream 606392 23168155 ~ 23183546 (+)
LOC122343169 NA non-coding upstream 4786 22542511 ~ 22543831 (+)
LOC122343193 NA non-coding upstream 7132 22540384 ~ 22541485 (+)
G30528 LOC107574372,LOC107655767,LOC107710146,LOC107574376,LOC107571418,LOC107574588 non-coding upstream 15585 22532415 ~ 22533032 (+)
G30526 NA non-coding upstream 42425 22505255 ~ 22506192 (+)
LOC122343186 si:rp71-7l19.2,LOC107575109,LOC107690967,LOC107575399,LOC107575457,LOC107575637,LOC107688608,LOC107665206,LOC107671223,LOC107719059 non-coding upstream 128925 22417927 ~ 22419692 (+)
G30598 NA non-coding downstream 242275 22804038 ~ 23246017 (+)
G30599 LOC107561645 non-coding downstream 246225 22807988 ~ 23249868 (+)
G30607 NA non-coding downstream 291718 22853481 ~ 22869703 (+)
G30609 NA non-coding downstream 296527 22858290 ~ 22861570 (+)
G30624 NA non-coding downstream 445211 23006974 ~ 23126523 (+)
LOC122342310 LOC107685875,LOC107671223,LOC107749047,LOC107728228,LOC107576424 other upstream 243469 22296897 ~ 22305148 (+)
G30218 LOC106676322,LOC106676931,LOC106676323,LOC107752219,LOC106675762,LOC106674878,LOC106676183 other upstream 316693 22231470 ~ 22231924 (+)
LOC122342301 LOC107563870,LOC107718524,LOC107683800,LOC107564010,LOC107563545 other upstream 787436 21368643 ~ 21761181 (+)
LOC122343019 LOC107705900 other downstream 100063 22661826 ~ 22682712 (+)
LOC122342317 NA other downstream 216220 22777983 ~ 22780139 (+)
G30636 LOC107575420,LOC107667978,LOC107563545,LOC107741456 other downstream 567343 23129106 ~ 23130189 (+)
G30632 NA other downstream 595796 23157559 ~ 23159756 (+)
LOC122342321 LOC107741609,LOC107575420,LOC107710255 other downstream 601932 23163695 ~ 23168007 (+)

Expression


Co-expression Network