fabp1a (fabp1,fabp1a,LOC107745323,LOC107597935)


Basic Information

Item Value
gene id fabp1a
gene name fabp1,fabp1a,LOC107745323,LOC107597935
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17912439 ~ 17915594 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237496.1
atctaaatatatttaatgtaaacacaatTTTAACATCTTCAAAAAGAAGTGAAATTTTATCCAAATactattttgtcatatttaatattcttccttgatatttttatatatttgtgaatCGACTAACGATGAACTCAGTCACGTGGGGCTAAACATTATTTGGcctaaacaatatttattctatttttaattcacCCTATGTATCCACAAATGAATCGTTGTTAAATTCTTCGGTGctggtttttgttgtttgtgaaTTACATgcttgtgaaaatgtttttttttttcctgtcacgTGATAACCGTTACTTTACCCAGCGCTGTAAGGATAAGCCAATCAAAGCTGTTTGTGATTACTGAAGACGATTACACGTTGCTTGGATGAAATAGAAAACTGTAAACACGAACGTAACACAACCTTAAAAGTCAAACcctattaaaactaaaaagtataaaagtgTCTAATCACTTAaagattgtaattaataatgttttattaataatgctttATGTTTGAAACGGAATTTATGCTTAGACTTAAAAGAGTTGATACTGTAAGATTATATGGGGCTATTTGTCACAATATATGGACTCTGGAATCAAATAGCCatcaacagtaaaaaaaaaaagaaaaaaagaagtgtgataTTAGTGTCAGTTTAAGACGATTCTGTTGGTTTTGAGGTTTTAgctcttgtgttttatttgttaaatgttcTTGTCCGAACCAACATGAGAAGAGACTGTTATCATCTTTCTCTTGTAAAGCGTTTAAAAGATCCTGTGATTAAAAAGTGATGAAGTTCTCCTGAAACATGTGAAGATCAGCTGACAGAAATGTCTCGTTTCAGCAGACCTTTGGACATTTATTCCAAACTAAGCTTTTTCTCGGTGGATTATTCATAATCTTTCTTTATATAATCGTATTGTGCATTGATAGGTTTAAAGCCTGATGAAACAGACCCCGATTGAGAGCAAACACAGTCGAAGAGTCTTCTGGACCGGATCTGAAGAAACCCACGGTGAGATCGAGTCCGTCTTCTGACTTTAACGATCGCTGTGTGGCTGAATGCTGAAGTGTTTCTGCAGCTGCTGATGGATTTCAGTGGAAAATACCAGCTGGAGTCACACGAGAACTTCGAGGCCTTCATGAAGGCCATCgGGCTGCCGGATGAAGAGATCGAGAAAGGCAAAGACATCAAGAGCATCTCAGAGATCCATCAGGACGGGAAGGACTTTAAAGTGACGGTGACGGCCGGGACCAAAGTGGTGCTGTACTCGTTTACCGTAGGAGAAGAGTGTGAGCTGGAGACCTTCACCGGAGAGAAAGCTAAAagcgTGGTTCACATGGATGGGAATAAGCTGACGGTGTGTGTGAAGGGGATCGAGTCTGTGACGGAGCTGACCGGAGACACCATCATTAACGTAAGACtgaacatcatcatcatcatcatcaccttcatcatcacacacacctgA
>XM_043237497.1
atctaaatatatttaatgtaaacacaatTTTAACATCTTCAAAAAGAAGTGAAATTTTATCCAAATactattttgtcatatttaatattcttccttgatatttttatatatttgtgaatCGACTAACGATGAACTCAGTCACGTGGGGCTAAACATTATTTGGcctaaacaatatttattctatttttaattcacCCTATGTATCCACAAATGAATCGTTGTTAAATTCTTCGGTGctggtttttgttgtttgtgaaTTACATgcttgtgaaaatgtttttttttttcctgtcacgTGATAACCGTTACTTTACCCAGCGCTGTAAGGATAAGCCAATCAAAGCTGTTTGTGATTACTGAAGACGATTACACGTTGCTTGGATGAAATAGAAAACTGTAAACACGAACGTAACACAACCTTAAAAGTCAAACcctattaaaactaaaaagtataaaagtgTCTAATCACTTAaagattgtaattaataatgttttattaataatgctttATGTTTGAAACGGAATTTATGCTTAGACTTAAAAGAGTTGATACTGTAAGATTATATGGGGCTATTTGTCACAATATATGGACTCTGGAATCAAATAGCCatcaacagtaaaaaaaaaaagaaaaaaagaagtgtgataTTAGTGTCAGTTTAAGACGATTCTGTTGGTTTTGAGGTTTTAgctcttgtgttttatttgttaaatgttcTTGTCCGAACCAACATGAGAAGAGACTGTTATCATCTTTCTCTTGTAAAGCGTTTAAAAGATCCTGTGATTAAAAAGTGATGAAGTTCTCCTGAAACATGTGAAGATCAGCTGACAGAAATGTCTCGTTTCAGCAGACCTTTGGACATTTATTCCAAACTAAGCTTTTTCTCGGTGGATTATTCATAATCTTTCTTTATATAATCGTATTGTGCATTGATAGGTTTAAAGCCTGATGAAACAGACCCCGATTGAGAGCAAACACAGTCGAAGAGTCTTCTGGACCGGATCTGAAGAAACCCACGCTGCTGATGGATTTCAGTGGAAAATACCAGCTGGAGTCACACGAGAACTTCGAGGCCTTCATGAAGGCCATCgGGCTGCCGGATGAAGAGATCGAGAAAGGCAAAGACATCAAGAGCATCTCAGAGATCCATCAGGACGGGAAGGACTTTAAAGTGACGGTGACGGCCGGGACCAAAGTGGTGCTGTACTCGTTTACCGTAGGAGAAGAGTGTGAGCTGGAGACCTTCACCGGAGAGAAAGCTAAAagcgTGGTTCACATGGATGGGAATAAGCTGACGGTGTGTGTGAAGGGGATCGAGTCTGTGACGGAGCTGACCGGAGACACCATCATTAACGTAAGACtgaacatcatcatcatcatcatcaccttcatcatcacacacacctgA
>XM_043237498.1
aaatctaaatatatttaatgtaaacacaatTTTAACATCTTCAAAAAGAAGTGAAATTTTATCCAAATactattttgtcatatttaatattcttccttgatatttttatatatttgtgaatCGACTAACGATGAACTCAGTCACGTGGGGCTAAACATTATTTGGcctaaacaatatttattctatttttaattcacCCTATGTATCCACAAATGAATCGTTGTTAAATTCTTCGGTGctggtttttgttgtttgtgaaTTACATgcttgtgaaaatgtttttttttttcctgtcacgTGATAACCGTTACTTTACCCAGCGCTGTAAGGATAAGCCAATCAAAGCTGTTTGTGATTACTGAAGACGATTACACGTTGCTTGGATGAAATAGAAAACTGTAAACACGAACGTAACACAACCTTAAAAGTCAAACcctattaaaactaaaaagtataaaagtgTCTAATCACTTAaagattgtaattaataatgttttattaataatgctttATGTTTGAAACGGAATTTATGCTTAGACTTAAAAGAGTTGATACTGTAAGATTATATGGGGCTATTTGTCACAATATATGGACTCTGGAATCAAATAGCCatcaacagtaaaaaaaaaaagaaaaaaagaagtgtgataTTAGTGTCAGTTTAAGACGATTCTGTTGGTTTTGAGGTTTTAgctcttgtgttttatttgttaaatgttcTTGTCCGAACCAACATGAGAAGAGACTGTTATCATCTTTCTCTTGTAAAGCGTTTAAAAGATCCTGTGATTAAAAAGTGATGAAGTTCTCCTGAAACATGTGAAGATCAGCTGACAGAAATGTCTCGTTTCAGCAGACCTTTGGACATTTATTCCAAACTAAGCTTTTTCTCGGTGGATTATTCATAATCTTTCTTTATATAATCGTATTGTGCATTGATAGGTTTAAAGCCTGATGAAACAGACCCCGATTGAGAGCAAACACAGTCGAAGAGTCTTCTGGACCGGATCTGAAGAAACCCACGGTGAGATCGAGTCCGTCTTCTGACTTTAACGATCGCTGTGTGGCTGAATGCTGAAGTGTTTCTGCAGCTGCTGATGGATTTCAGTGGAAAATACCAGCTGGAGTCACACGAGAACTTCGAGGCCTTCATGAAGGCCATCgGGCTGCCGGATGAAGAGATCGAGAAAGGCAAAGACATCAAGAGCATCTCAGAGATCCATCAGGACGGGAAGGACTTTAAAGTGACGGTGACGGCCGGGACCAAAGTGGTGCTGTACTCGTTTACCGTAGGAGAAGAGTGTGAGCTGGAGACCTTCACCGGAGAGAAAGCTAAAagcgTGGTTCACATGGATGGGAATAAGCTGACGGTGTGTGTGAAGGGGATCGAGTCTGTGACGGAGCTGACCGGAGACACCATCATTAACATCCTCAGCTTCGAGGGAATCGTCTACAAACGTCTCAGCAGACGCATCTGATCAGGATCATTCACTCACAACAGCACACAGGATCTGCTCAGAGCAtctttattacacacacacacacacacacacacacacacac

Function

symbol description
fabp1a Predicted to enable fatty acid binding activity. Predicted to be located in cytoplasm. Is expressed in hepatocyte; intestine; and liver. Orthologous to human FABP1 (fatty acid binding protein 1).
fabp1 Enables antioxidant activity. Involved in cellular response to hydrogen peroxide; cellular response to hypoxia; and negative regulation of cysteine-type endopeptidase activity involved in apoptotic process. Located in cytosol and nucleoplasm. Biomarker of IgA glomerulonephritis and hypertension.

NR:

description
PREDICTED: fatty acid binding protein 1-A, liver

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0005504 fatty acid binding molecular_function
GO:0005215 transporter activity molecular_function

KEGG:

id description
K08750 FABP1, L-FABP; fatty acid-binding protein 1, liver

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237496.1 False 1479 mRNA 0.38 3 17912441 17915435
XM_043237497.1 False 1412 mRNA 0.37 4 17912441 17915435
XM_043237498.1 True 1563 mRNA 0.38 4 17912439 17915594

Neighbor

gene id symbol gene type direction distance location
oxt oxt,LOC107729605,LOC107745630,LOC107597959,LOC107674922,LOC107566857,LOC107670390 coding upstream 9522 17901441 ~ 17902917 (+)
LOC122343009 zgc:65851,LOC107670379,LOC107668750,LOC107599600,LOC107708255,LOC107755851,LOC107573085 coding upstream 100976 17805840 ~ 17811463 (+)
kdr kdr,LOC107755244,LOC107665394,LOC107683984,LOC107718422 coding upstream 246542 17644435 ~ 17665897 (+)
clocka clock,clocka,LOC107701480 coding upstream 281617 17582070 ~ 17630822 (+)
nmu nmu,LOC107684000,LOC107755222,LOC107568121,LOC107701461,LOC107718432 coding upstream 333635 17565453 ~ 17578804 (+)
exosc2 exosc2,exos2 coding downstream 17711 17933305 ~ 17937916 (+)
abl1 abl1,LOC107670387,LOC107597931,LOC107674916,LOC107566858 coding downstream 24090 17939684 ~ 17963519 (+)
ddx54 ddx54,LOC107729212,LOC107745378,LOC107674901,LOC107597958,LOC107566861,LOC102784149 coding downstream 69399 17984993 ~ 17997658 (+)
lman2la lman2l,lman2la,LOC107660366,LOC107565653,LOC102299173 coding downstream 287141 18202735 ~ 18210893 (+)
LOC122343129 LOC107565648,LOC107660365,LOC106563294,LOC108274068,LOC107733731 coding downstream 303122 18218716 ~ 18222320 (+)
G29329 NA non-coding upstream 57075 17854461 ~ 17855364 (+)
G29334 NA non-coding upstream 88174 17823250 ~ 17824265 (+)
G29331 NA non-coding upstream 94023 17818146 ~ 17818416 (+)
G29317 NA non-coding upstream 94506 17817546 ~ 17817933 (+)
G29306 NA non-coding upstream 166122 17745528 ~ 17746317 (+)
G29318 LOC107745315,LOC107597934 non-coding downstream 460 17916054 ~ 17922889 (+)
G29364 NA non-coding downstream 16290 17931884 ~ 17932404 (+)
G29476 NA non-coding downstream 84003 17999597 ~ 18002479 (+)
G29484 tbx3a,LOC107742157,LOC107597930,LOC107687999,LOC107728866 non-coding downstream 143741 18059335 ~ 18060916 (+)
G29544 NA non-coding downstream 520049 18435643 ~ 18460595 (+)
atp5mj NA other upstream 871609 17038419 ~ 17040830 (+)
G28982 NA other upstream 1438058 16473898 ~ 16474381 (+)
G28899 NA other upstream 1926713 15985219 ~ 15985726 (+)
G28891 NA other upstream 2070584 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 2257161 15565499 ~ 15655278 (+)
G29526 NA other downstream 384821 18300415 ~ 18301189 (+)
G29545 NA other downstream 520866 18436460 ~ 18461317 (+)
G29642 NA other downstream 967585 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 1374626 19290220 ~ 19342911 (+)
G29835 NA other downstream 1815668 19731262 ~ 19786128 (+)

Expression


Co-expression Network