mdm1 (LOC107577767,LOC107655590,LOC107725562,LOC107694231)


Basic Information

Item Value
gene id mdm1
gene name LOC107577767,LOC107655590,LOC107725562,LOC107694231
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 6740893 ~ 6750250 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237512.1
ATTTTAGTGGTTGGATTACCTAAATGCGATTCAAGTGAGCTGTTGTTTAGCCATCCGTTACACTTGTAATTTAACTGTAATGTAACTGTTCAGAAGAGCATTCGCTGTTTATgcaatataaacacaaaaatcagTATCAACTACAAGCAAacaaaggtaacactttattccaAGGTGTTCTTTTTACACATTATGcacttactttttaaaaacacttcgttatgcataattacatacaaGCAACCCTAAGACAAACCGTAACCCTGACCACAAAGTAAGTCCatataataaagtgtaacccaaaCAAATATGAACGGACAGAtgcaattaaaacttttattaacaGCGGTAATAGTACACAAAATGCAGCATTATACAGCGCAGTACAGAGTCACAACAAATCGGCTTAGAGTCGTGCGCATGCGCGTATCGTGGGACGCCGCAGCCATCACCAAGGCAACAGCGAAGCCCGTAACCGAATCTAATCTCAAGCGTGTAACGAAAACGCTCCTTTGTTGACCGAGCTCTCTGTGCACCGGTCGCCACTGGCTCAAACTCAGAATGCCTGTCCGTTTTAAGGGCATCAGCGAGTATCGAAGTAAATACAAGGGTCGAACAACACGATCCAGGAGCGATTCTCCACAACGCAGGATGCGACAGGCAGGACTGCGCTCAGACCAGTCAAGAATTACTCAGGAACCCCAATTCATATCCAAAAGAAAAGTGCCATTTTATCCACCTCAGATATCCGGTTCTTTCCGATGGGAGGGGCATGCTCCGGCACCACGGCGTCAGGAGAAGAGCAGGCCTGTCACACCTCCGCCTGTGTGCCGAGCCTCTAGTGCAGAAAGAGCAGGGACCCCTCTTGCCCCAAGAGGCCCTGTGCCACCAGAGGGCATCGCTGCACCATCCCAAGCGGCTCAGACGTACACCACCGCTACTGCAGACCGgcagcaacaaaaactaaacGGAGTTAAACGTGCGTTAAGGAAACGAGCGGGACTGAGATCGGAGCGACAGAGGAATAGCCGTTTGAGCTCTGAGTACCAGAGACAGTTCATGTGGAAAACACCTACGGACAATTCGCCCCTGCTGGCTGCACATGAGATGCTGTATAGCAACAACGGAGCCATCCCACCTTTCAAATCAAACCCTGTAATCGTGGAGAGCGAGTACCAGAGAAATTTCAAAGGATCACCTCCTCCCAGACCACCGCGCCTGAGGCGAGACGTTGAACAATACGAGGTCCCGCTGCTCGATGCAGGGAACATCGCCACCCCAGAAAAGAGTAAGGggaacaagaagaagaagaaggagcaACACAGTAGAAAGTCAAGCCCTGAAGAGGAAGTCGCCCATCGACAGCAACAGGAAGTGAGTTCACCCTGTGCCCTGAGAGACCCTTCGCCCAAGGTTATGAGGAAAGTGAAAACTGAATACAGATCCAACTTTCGATCTCCTCTCCAGTATAGTTACAGAGATGGAGAATGGGTGAAGACGAAAACTCCAAAGGAGGAGGAGTGTTGTTTTCACGAAAGGTATCGTGAGGTGCAGGAGTTACGTGAGAAAGCTGAGGCCTACAGAAAAAGGGCCTGGGGAACTCATTTTTCTCGGCAGCATCTGAACCAGATCCAGTCGGACCACAACTGGATGTGGGAGCCTTCGAGTGGCACCTCTTCCTCGTCCATTGAATCTGAGGCCTGCAGAAGCAGTAGTAGCACCCCTATCATCGAGGCTCTGGATCTGGCCAGGGCTGGCAGTGTCAGGGGAAGCTCTAGCCCTGGGCCTTCAGCTTCTGTGGCAGCCAGCAGGAGAAGCTCTTCTGGGTTTGCTCGTCTTCATGAAGACCCCACCCTCCCTGTGCAGAGGAAGCTGGCCTGGGATGAAGAAGAGGAACTTGGGGAGAGAGATGAGTCGGAGATTTCACAGGAGGAGCTAACTGTTGAAAAAAATGTGGGGAAtccaaaaaatgaacattggGACGTGAAGGAGAGAAATGAACGGTTGCACGCGTTGGAAACTGAGTCATCATTAGTGGTGGACGGCTCTGAAGGTTCCATTAACAGGGGCAGACTGCCAACCCCCAAACTCAGGACCATACAGACTGTACAAAGAACACACCATGATCGCACCACTCCAGCTACTGGAGGAGCTTTGCTGGTCTCTCCTCCGAATATCAAACATTCCCCCAGCAGAATCAGGAGGAGTGAGCCGCCTTTAGGAAAACCTCACTCTCCTTACAAACATATCATAGATGGCTCTCCACAGAGGCCGCATAGCAAGGCTGAGAGCGGAAGCTTGCCACGTTCGCCGGCAGCTGCTGGCCTGACCACCGTGGATCCACTTCCCATGCGAGAAGATGCCTGGTCTGAAGAGGGGGCGGCAGACTGCTCCACCAATCCAAGACAACCCAAGCcatcacaaaaacaacagaccGGCCAGCGTCACAAAGCTCCACCTGCCAACAGGATCCAGGGCACAATGAGAAACCCGGAATTTCAGCATAATGGTAACCTGGGAATTTTTCGTCcagagctgtttttgtttcctgAAGCTGACTCGTCAGATAATGATGATAAGCTGTCTCAGATCTCATCTAGATCCGCAGCCTCATGCTCCATGGCCTCCGAACTCTTGGGTCGCGCTCAGAGGAGAAAAGAGGAATTCTGGGGAAAGAGATAATGCGGCAGTGCCCATGAATTGATTGTGCATGTGCTGAAAAAATGGCCATTAATTTCTCAGGAAGTGAACGTGTACACTTTTTCTCCCATTTTTGAAATCTGATttggtgtgatttttattttcattcatttggaaTAGACtggtatttaaaatgaaaatatatttgtaatttattttatttacttgcattttaatattgtgcgTTCAGTagctaaaaatgattttgcgAAG
>XM_043237514.1
CATTTTAGTGGTTGGATTACCTAAATGCGATTCAAGTGAGCTGTTGTTTAGCCATCCGTTACACTTGTAATTTAACTGTAATGTAACTGTTCAGAAGAGCATTCGCTGTTTATgcaatataaacacaaaaatcagTATCAACTACAAGCAAacaaaggtaacactttattccaAGGTGTTCTTTTTACACATTATGcacttactttttaaaaacacttcgttatgcataattacatacaaGCAACCCTAAGACAAACCGTAACCCTGACCACAAAGTAAGTCCatataataaagtgtaacccaaaCAAATATGAACGGACAGAtgcaattaaaacttttattaacaGCGGTAATAGTACACAAAATGCAGCATTATACAGCGCAGTACAGAGTCACAACAAATCGGCTTAGAGTCGTGCGCATGCGCGTATCGTGGGACGCCGCAGCCATCACCAAGGCAACAGCGAAGCCCGTAACCGAATCTAATCTCAAGCGTGTAACGAAAACGCTCCTTTGTTGACCGAGCTCTCTGTGCACCGGTCGCCACTGGCTCAAACTCAGAATGCCTGTCCGTTTTAAGGGCATCAGCGAGTATCGAAGTAAATACAAGGGTCGAACAACACGATCCAGGAGCGATTCTCCACAACGCAGGATGCGACAGGCAGGACTGCGCTCAGACCAGTCAAGAATTACTCAGGAACCCCAATTCATATCCAAAAGAAAAGTGCCATTTTATCCACCTCAGATATCCGGTTCTTTCCGATGGGAGGGGCATGCTCCGGCACCACGGCGTCAGGAGAAGAGCAGGCCTGTCACACCTCCGCCTGTGTGCCGAGCCTCTAGTGCAGAAAGAGCAGGGACCCCTCTTGCCCCAAGAGGCCCTGTGCCACCAGAGGGCATCGCTGCACCATCCCAAGCGGCTCAGACGTACACCACCGCTACTGCAGACCGgcagcaacaaaaactaaacGGAGTTAAACGTGCGTTAAGGAAACGAGCGGGACTGAGATCGGAGCGACAGAGGAATAGCCGTTTGAGCTCTGAGTACCAGAGACAGTTCATGTGGAAAACACCTACGGACAATTCGCCCCTGCTGGCTGCACATGAGATGCTGTATAGCAACAACGGAGCCATCCCACCTTTCAAATCAAACCCTGTAATCGTGGAGAGCGAGTACCAGAGAAATTTCAAAGGATCACCTCCTCCCAGACCACCGCGCCTGAGGCGAGACGTTGAACAATACGAGGTCCCGCTGCTCGATGCAGGGAACATCGCCACCCCAGAAAAGAGTAAGGggaacaagaagaagaagaaggagcaACACAGTAGAAAGTCAAGCCCTGAAGAGGAAGTCGCCCATCGACAGCAACAGGAAGTGAGTTCACCCTGTGCCCTGAGAGACCCTTCGCCCAAGGTTATGAGGAAAGTGAAAACTGAATACAGATCCAACTTTCGATCTCCTCTCCAGTATAGTTACAGAGATGGAGAATGGGTGAAGACGAAAACTCCAAAGGAGGAGGTGCAGGAGTTACGTGAGAAAGCTGAGGCCTACAGAAAAAGGGCCTGGGGAACTCATTTTTCTCGGCAGCATCTGAACCAGATCCAGTCGGACCACAACTGGATGTGGGAGCCTTCGAGTGGCACCTCTTCCTCGTCCATTGAATCTGAGGCCTGCAGAAGCAGTAGTAGCACCCCTATCATCGAGGCTCTGGATCTGGCCAGGGCTGGCAGTGTCAGGGGAAGCTCTAGCCCTGGGCCTTCAGCTTCTGTGGCAGCCAGCAGGAGAAGCTCTTCTGGGTTTGCTCGTCTTCATGAAGACCCCACCCTCCCTGTGCAGAGGAAGCTGGCCTGGGATGAAGAAGAGGAACTTGGGGAGAGAGATGAGTCGGAGATTTCACAGGAGGAGCTAACTGTTGAAAAAAATGTGGGGAAtccaaaaaatgaacattggGACGTGAAGGAGAGAAATGAACGGTTGCACGCGTTGGAAACTGAGTCATCATTAGTGGTGGACGGCTCTGAAGGTTCCATTAACAGGGGCAGACTGCCAACCCCCAAACTCAGGACCATACAGACTGTACAAAGAACACACCATGATCGCACCACTCCAGCTACTGGAGGAGCTTTGCTGGTCTCTCCTCCGAATATCAAACATTCCCCCAGCAGAATCAGGAGGAGTGAGCCGCCTTTAGGAAAACCTCACTCTCCTTACAAACATATCATAGATGGCTCTCCACAGAGGCCGCATAGCAAGGCTGAGAGCGGAAGCTTGCCACGTTCGCCGGCAGCTGCTGGCCTGACCACCGTGGATCCACTTCCCATGCGAGAAGATGCCTGGTCTGAAGAGGGGGCGGCAGACTGCTCCACCAATCCAAGACAACCCAAGCcatcacaaaaacaacagaccGGCCAGCGTCACAAAGCTCCACCTGCCAACAGGATCCAGGGCACAATGAGAAACCCGGAATTTCAGCATAATGGTAACCTGGGAATTTTTCGTCcagagctgtttttgtttcctgAAGCTGACTCGTCAGATAATGATGATAAGCTGTCTCAGATCTCATCTAGATCCGCAGCCTCATGCTCCATGGCCTCCGAACTCTTGGGTCGCGCTCAGAGGAGAAAAGAGGAATTCTGGGGAAAGAGATAATGCGGCAGTGCCCATGAATTGATTGTGCATGTGCTGAAAAAATGGCCATTAATTTCTCAGGAAGTGAACGTGTACACTTTTTCTCCCATTTTTGAAATCTGATttggtgtgatttttattttcattcatttggaaTAGACtggtatttaaaatgaaaatatatttgtaatttattttatttacttgcattttaatattgtgcgTTCAGTagctaaaaatgattttgcgAAG
>XM_043237515.1
GAGAGCGCGCGCTGCAGGCTGCACAAACGCTTTCAGTTTTGGGATTTGTTTCGGGTGTTTGCATTTCGATGACTAAATATGAATACGACTCCTTATAAGATGTAGACTGCGCGAACCACGTATAGAACAcgttgtgttttttattaagaCGCGTCTTAAACGGGCATCAGCGAGTATCGAAGTAAATACAAGGGTCGAACAACACGATCCAGGAGCGATTCTCCACAACGCAGGATGCGACAGGCAGGACTGCGCTCAGACCAGTCAAGAATTACTCAGGAACCCCAATTCATATCCAAAAGAAAAGTGCCATTTTATCCACCTCAGATATCCGGTTCTTTCCGATGGGAGGGGCATGCTCCGGCACCACGGCGTCAGGAGAAGAGCAGGCCTGTCACACCTCCGCCTGTGTGCCGAGCCTCTAGTGCAGAAAGAGCAGGGACCCCTCTTGCCCCAAGAGGCCCTGTGCCACCAGAGGGCATCGCTGCACCATCCCAAGCGGCTCAGACGTACACCACCGCTACTGCAGACCGgcagcaacaaaaactaaacGGAGTTAAACGTGCGTTAAGGAAACGAGCGGGACTGAGATCGGAGCGACAGAGGAATAGCCGTTTGAGCTCTGAGTACCAGAGACAGTTCATGTGGAAAACACCTACGGACAATTCGCCCCTGCTGGCTGCACATGAGATGCTGTATAGCAACAACGGAGCCATCCCACCTTTCAAATCAAACCCTGTAATCGTGGAGAGCGAGTACCAGAGAAATTTCAAAGGATCACCTCCTCCCAGACCACCGCGCCTGAGGCGAGACGTTGAACAATACGAGGTCCCGCTGCTCGATGCAGGGAACATCGCCACCCCAGAAAAGAGTAAGGggaacaagaagaagaagaaggagcaACACAGTAGAAAGTCAAGCCCTGAAGAGGAAGTCGCCCATCGACAGCAACAGGAAGTGAGTTCACCCTGTGCCCTGAGAGACCCTTCGCCCAAGGTTATGAGGAAAGTGAAAACTGAATACAGATCCAACTTTCGATCTCCTCTCCAGTATAGTTACAGAGATGGAGAATGGGTGAAGACGAAAACTCCAAAGGAGGAGGAGTGTTGTTTTCACGAAAGGTATCGTGAGGTGCAGGAGTTACGTGAGAAAGCTGAGGCCTACAGAAAAAGGGCCTGGGGAACTCATTTTTCTCGGCAGCATCTGAACCAGATCCAGTCGGACCACAACTGGATGTGGGAGCCTTCGAGTGGCACCTCTTCCTCGTCCATTGAATCTGAGGCCTGCAGAAGCAGTAGTAGCACCCCTATCATCGAGGCTCTGGATCTGGCCAGGGCTGGCAGTGTCAGGGGAAGCTCTAGCCCTGGGCCTTCAGCTTCTGTGGCAGCCAGCAGGAGAAGCTCTTCTGGGTTTGCTCGTCTTCATGAAGACCCCACCCTCCCTGTGCAGAGGAAGCTGGCCTGGGATGAAGAAGAGGAACTTGGGGAGAGAGATGAGTCGGAGATTTCACAGGAGGAGCTAACTGTTGAAAAAAATGTGGGGAAtccaaaaaatgaacattggGACGTGAAGGAGAGAAATGAACGGTTGCACGCGTTGGAAACTGAGTCATCATTAGTGGTGGACGGCTCTGAAGGTTCCATTAACAGGGGCAGACTGCCAACCCCCAAACTCAGGACCATACAGACTGTACAAAGAACACACCATGATCGCACCACTCCAGCTACTGGAGGAGCTTTGCTGGTCTCTCCTCCGAATATCAAACATTCCCCCAGCAGAATCAGGAGGAGTGAGCCGCCTTTAGGAAAACCTCACTCTCCTTACAAACATATCATAGATGGCTCTCCACAGAGGCCGCATAGCAAGGCTGAGAGCGGAAGCTTGCCACGTTCGCCGGCAGCTGCTGGCCTGACCACCGTGGATCCACTTCCCATGCGAGAAGATGCCTGGTCTGAAGAGGGGGCGGCAGACTGCTCCACCAATCCAAGACAACCCAAGCcatcacaaaaacaacagaccGGCCAGCGTCACAAAGCTCCACCTGCCAACAGGATCCAGGGCACAATGAGAAACCCGGAATTTCAGCATAATGGTAACCTGGGAATTTTTCGTCcagagctgtttttgtttcctgAAGCTGACTCGTCAGATAATGATGATAAGCTGTCTCAGATCTCATCTAGATCCGCAGCCTCATGCTCCATGGCCTCCGAACTCTTGGGTCGCGCTCAGAGGAGAAAAGAGGAATTCTGGGGAAAGAGATAATGCGGCAGTGCCCATGAATTGATTGTGCATGTGCTGAAAAAATGGCCATTAATTTCTCAGGAAGTGAACGTGTACACTTTTTCTCCCATTTTTGAAATCTGATttggtgtgatttttattttcattcatttggaaTAGACtggtatttaaaatgaaaatatatttgtaatttattttatttacttgcattttaatattgtgcgTTCAGTagctaaaaatgattttgcgAAG

Function

NR:

description
PREDICTED: nuclear protein MDM1-like, partial

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K17886 MDM1; nuclear protein MDM1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237512.1 True 2913 mRNA 0.49 15 6740893 6750249
XM_043237514.1 False 2884 mRNA 0.49 14 6740893 6750250
XM_043237515.1 False 2496 mRNA 0.50 15 6740893 6749568

Neighbor

gene id symbol gene type direction distance location
il26 NA coding downstream 6164 6732341 ~ 6734729 (-)
LOC122343434 NA coding downstream 13060 6726585 ~ 6727833 (-)
ifng1r NA coding downstream 16490 6723047 ~ 6724403 (-)
ifng1 NA coding downstream 19744 6719218 ~ 6721149 (-)
si:ch211-266a5.12 LOC107725560,LOC107655565,LOC107587181 coding downstream 25165 6713287 ~ 6715728 (-)
opn1sw1 opn1sw coding upstream 5762 6756012 ~ 6758188 (-)
irf5 LOC107577905,LOC107587141,LOC107725599,LOC107655585,LOC107694268,LOC107757280 coding upstream 26049 6776299 ~ 6784035 (-)
akap14 NA coding upstream 42117 6792367 ~ 6793435 (-)
gxylt1b gxylt1,LOC107729836,LOC107582079,LOC107694260 coding upstream 183843 6934093 ~ 6940296 (-)
yaf2 yaf2,LOC108439407,LOC105018284,LOC107725590 coding upstream 190196 6940446 ~ 6950897 (-)
LOC122342911 NA non-coding downstream 351692 6377116 ~ 6389201 (-)
G26556 NA non-coding downstream 473479 6266832 ~ 6267414 (-)
G26541 NA non-coding downstream 505955 6186089 ~ 6234938 (-)
G26490 NA non-coding downstream 656683 6083590 ~ 6084210 (-)
G26487 NA non-coding downstream 663561 6077087 ~ 6077332 (-)
G26787 LOC107725579,LOC107655582 non-coding upstream 91724 6841974 ~ 6843849 (-)
G26790 LOC107725579,LOC107587145 non-coding upstream 95309 6845559 ~ 6908495 (-)
G26795 cntn1b,cntn1,LOC107581848,LOC107757284,LOC107694230,LOC107725506 non-coding upstream 109824 6860074 ~ 6862247 (-)
G26796 NA non-coding upstream 112473 6862723 ~ 6863382 (-)
G26799 NA non-coding upstream 133651 6883901 ~ 6956375 (-)
il22 NA other downstream 152 6737641 ~ 6740741 (-)
msrb3 msrb3,LOC107725596,LOC107587134,LOC107757268,LOC107561995 other downstream 379409 6350491 ~ 6361484 (-)
arhgef39 arhgef39,LOC107725686,LOC107655603,LOC107757260,LOC107694288 other downstream 488245 6085892 ~ 6252648 (-)
mrps33 mrps33,LOC107694294,LOC107597883,LOC107725593,LOC107600452,LOC107655561 other downstream 800878 5938055 ~ 5940015 (-)
G26462 NA other downstream 827355 5906755 ~ 5913538 (-)
si:dkey-261e22.4 NA other upstream 464084 7214334 ~ 7220911 (-)
G26951 NA other upstream 804865 7555115 ~ 7558453 (-)
LOC122343432 NA other upstream 1497661 8247911 ~ 8249927 (-)
G27232 LOC107589947,LOC107725677,LOC107659846,LOC107586091,LOC107694692 other upstream 1710256 8460506 ~ 8468028 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other upstream 1763380 8513630 ~ 8517583 (-)

Expression


Co-expression Network