ifrd1 (ifrd1,LOC107580056,LOC107726045,LOC107656357,LOC107658876,LOC107579159)


Basic Information

Item Value
gene id ifrd1
gene name ifrd1,LOC107580056,LOC107726045,LOC107656357,LOC107658876,LOC107579159
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2388979 ~ 2394441 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237518.1
GCGCGGTGACGCAGCCCTAGTTTGAGAGGGAAAATGTATCGCTCGCGCTCCAAGTCTAACACCGGAATCGCTTTTAATACTTTCCTTTTCACTGTGCCATTGGAATATACTCAACTGAAAAGACATTATAGTAAAAACTGGTCGTGTATTGGTTGATTTTAGGCGCGGGGACTACTCTTTTAAGCAAAATGCCACGGGCCAAGAAAAGGAGCGGCAGAGgGGGACAACAAGGGACTGTCCAGCCGTTCAGTGATGAAGATGCATCTATTGAGACCCTCAGTCACTGCAGCAGCCTCAGTGAAAGAACCAGTGTAGCAGAGGAAGGAGCTGGTGATGCCGAAGAAATGGCTCAAGAGGACTTCCAGTACAAACTGAAGGTGTACATTGACAGCACAGTGGATAAGAGTGCCAAGACCAGACAAGGTGCCCTTGATGGACTAAAGACTGCCATGGCAACCAAAATCCTCTACGAATTCATTTCCGAGAGAAGGATGACCATCACAGACAGCATTGAACGCTGCTTGAAGAAAGGTAAAGGAGTGGAGCAGAGCGCCGCAGCCTCGCTGGCGTGTCTCCTGTGCATCCAGCTGGGGTCTGGGATTGAGAGCGAAGAGGTTTTTAAGACCCTTAAACCCGTATTTAAGACCATCCTCAACGATGGAGCAGCTAACATTCAAGCCAGACAAGCTTGTGCAACAAGTCTAGGCCTTTGCACTCTTGTAGCAGAAGATGATATCATGGATGTGTATGCCACTATGGAGTGTTTTGAGAGCCTCTTCACGCACTCGTATGTCAGAGAAGATGGAAGCAGACCTTCTGTGAATCCTCAAACCACACAGCTCCACACAAACGCTCTCCTGTCCTGGGCCCTGCTGCTCACCATCTGCACCGGCAGCCACATCAGAGCCATTGCACAAAAACATCTCGCTAAACTTCCACGTCTGCTGGAGAATGACGACGTCAACATGAGGATTGCTGCTGGCGAGACCATCGCTCTCCTCTTTGAGCTCATCAGGGATGTTGACCCTGAGTTTGATTATGACGGCTGGGAGCCGCTGTGTGAGAAGCTGAACGCTTTAGCCACCGACTGCAACAAACACAGAGCCAAGACCGATAAGAGGAAGCAGAGGTCTGTCTTCAGAGATGTCCTTAAGGCCGTAGAGGAGGGGGATTTTCAGAGCGAGACGATCCGCTTCGGCACAGAGCGAATGGTCATCGACAGCTGGGTGAGGAAGAGGACTTACGACGCTTTCAGAGAGTTTGTCGGCTCTGGGATGAACTACCATCTACAGGCAAACGAGTTCATTAGAGATGTGTTTGAACTGGGACCACCAATGTTGATCGATTCTGCTGCTCTAAAAGCCATGAAGAGCTCCAGATTGGAGAGGCACCTCTACAATGCAGCTGCGTTTAAAGCTCGAACCAAGGCCAGGAACAAGTTTCGGGACAAAAGGGTGGATGTTGGGGAGTTTTAAGAAGTTTtgtaaagcacattttttttttttttttttttccccaatctCGAGTTAGTCTTTCGATACTTTTCATTCCTAACATGGtctcttttatatatacatctatgtaaaatgttaatatttcctATCGATAAATTCACTAATTTCTCTTAGTCTAacttatgtttatatgtaagtGGTGTTGGGTTCGCTAACATCAGAtcatgttttctgttgtttgtgtAGTTGTAGGTCCTGTAGAGTTATCGCACCATATTTATGAGTATTTTGTGTAAGCGAATGTCATGATTGGCTGTTCTGTAGTGACAAggctgtacatttaaaaaaagaaaaaaaacaataataaaatttagATTAAGTTGATGCCCCTTA

Function

symbol description
ifrd1 Predicted to be active in nucleus. Orthologous to human IFRD1 (interferon related developmental regulator 1).

NR:

description
PREDICTED: interferon-related developmental regulator 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237518.1 True 1847 mRNA 0.46 12 2388979 2394441

Neighbor

gene id symbol gene type direction distance location
LOC122343453 LOC107710120,LOC107658877,LOC107726057,LOC107580024,LOC107656361,LOC107584004,LOC100535105 coding upstream 199231 2178532 ~ 2189748 (+)
utp20 utp20,LOC107658916,LOC107710084,LOC107656365,LOC107725898 coding upstream 366669 2001089 ~ 2022310 (+)
usp18 LOC107725967 coding upstream 395391 1990505 ~ 1993588 (+)
pex26 LOC107658896,LOC107583978,LOC107725950 coding upstream 399042 1987476 ~ 1989937 (+)
rhno1 LOC107736423,LOC107658898,LOC107583982 coding upstream 401805 1985568 ~ 1987174 (+)
foxp2 foxp2 coding downstream 111505 2505946 ~ 2602501 (+)
mdfic mdfic,si:ch211-262n1.4,LOC107658868,LOC107656347,LOC107580133,LOC107584008 coding downstream 228098 2622539 ~ 2641837 (+)
elk3 elk3,LOC107743764 coding downstream 452833 2847274 ~ 2862389 (+)
si:ch1073-67j19.1 LOC107725978,LOC107743829,LOC107580374 coding downstream 513018 2907459 ~ 2908695 (+)
LOC122342536 NA coding downstream 517737 2912178 ~ 2913479 (+)
G25313 NA non-coding upstream 83120 2303968 ~ 2305859 (+)
G25310 dock4b,LOC107584044,LOC107658732,LOC107656358,LOC107725897 non-coding upstream 86580 2288180 ~ 2302399 (+)
G25309 NA non-coding upstream 105202 2283290 ~ 2283777 (+)
G25300 NA non-coding upstream 220982 2167733 ~ 2167997 (+)
G25288 NA non-coding upstream 281885 2106763 ~ 2107094 (+)
G25327 NA non-coding downstream 8004 2402445 ~ 2402674 (+)
G25330 NA non-coding downstream 10733 2405174 ~ 2405397 (+)
G25331 NA non-coding downstream 13130 2407571 ~ 2408937 (+)
G25332 NA non-coding downstream 14528 2408969 ~ 2410645 (+)
G25334 NA non-coding downstream 17622 2412063 ~ 2412584 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 393443 1994240 ~ 1995536 (+)
LOC122342451 NA other upstream 600883 1784237 ~ 1788096 (+)
LOC122343488 NA other upstream 716020 1670512 ~ 1672959 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 1057136 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 1097755 1288297 ~ 1291224 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 705296 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 725074 3119515 ~ 3306758 (+)
G25514 NA other downstream 1087188 3481629 ~ 3502094 (+)
G25551 NA other downstream 1343061 3737502 ~ 3738594 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 1835188 4229629 ~ 4231092 (+)

Expression


Co-expression Network