chrna2b (chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496,LOC108434998)


Basic Information

Item Value
gene id chrna2b
gene name chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496,LOC108434998
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16701043 ~ 16710156 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237522.1
GCGGATGGGAGGACGGAGAGAGATGCTCAGTCCGGAGTAAACCCTGGAAACAGCAGGAGCCAGGTCATGAGTGCATCTATACACCCTGTGACACAAATGGAGTTACTCCGGGACGCACATTCTTCTAAAAACCCTCATTTTCGGATGCGTATGGAAATGAATGACACTTCTGTGCAATACGCAACTCGGAATCCGTGTTCCTGATCTTTCGCTGAACAGGTGCGCAGAAAGCGCATTGCCGTGCTTTTTCgcgcagagagaaagaaacttcgttcgagTTCATAAACACGGTGGATTTAAGCTGCTTCGCTCGAAACATTTTAcggaaaattatttttgtcaacacttttttttttttttttttttttgccaacagtgataaatgtaatttaaaacaaaaataaaaacttgacgAGAGCACCTAACCACGACCGGCAGAGGATGCAGAgcatgacagaaaaacacagaaagcaCTGAATTGTACGGAAATGCAGATGAAAGCGTAGAAATGTACTGAAAGTAATTGGCTGTATGATGGAGCGCTTTGAGAATCAGCGGTTCTTCCTGAGGATTTCTCTTCTCTGCATTATCCTATGTGAGTCAATCTCTTGTTGTGAGAAGACTCATTCACACGCTGAAGATGAActctttaaaaagctgtttgATGGATACAACAAGTGGTCAAGGCCCGTACCAAACACCTCTGATGTTGTCATTGTCAAGTTTGGTTTGTCTATTGCCCAGCTGATTGATGTGGACGAGAAGAATCAGATGATGACAACAAATGTCTGGCTAAAGCAGGAGTGGAACGACTATAAACTACGCTGGAAACCTTCAGACTTCGACAATGTGACTTCCATCAGGGTTCCGTCAGAACTAATCTGGGTCCCGGATATAGTTTTGTACAACAATGCAGACGGAGAGTTTGCGGTGACCCACATGACCAAAGCCCACCTCTTCCACACAGGTAAAGTGCGCTGGGTACCACCTGCCATCTACAAGAGCTCATGCAGCATCGATGTCACCTTCTTCCCCTTTGACCAGCAGAACTGCAAGATGAAATTCGGCTCGTGGACTTACGACAAAGCCAAGATCGACCTGGAGCGCATCGAGAACACGGTGGACTTAAAAGACTACTGGGAGAGCGGCGAGTGGGCCATCATCAATGCCGTGGGCACCTACAACACCAAGAAGTACGACTGCTGCCACGAGATCTACCCAGACATCACCTACTTCTTCATCATCCGCCGTCTGCCGCTCTTCTACACCATAAACCTCATCATCCCCTGCCTGCTCATCTCCTGCCTGACCGTGCTGGTCTTCTACCTCCCGTCAGATTGCGGTGAGAAGATCACGCTGTGCATCTCGGTCCTCCTCTCGCTCACCGTCTTCCTGCTGCTCATCACTGAAATAATCCCCTCCACCTCGCTCGTGATCCCGCTCATTGGCGAATACCTCCTCTTCACTATGATCTTTGTCACCCTGTCCATCGTCATCACCGTCTTCGTGCTTAACGTCCACCACCGCTCGCCCAGCACTCATAAGATGCCCCGTTGGGTTCACTCAGTCTTCTTGGATTTGATCCCGCGGTGGTTGTTTATGCGGAGACCTGCACCGGACAGCCGTCGCAGGCAGAAACTCCTCCTCCTGCAGCGGCAGGGCCAAGGAATGACGTCACGGGTGCTTGGACCGGCAAACGCGACCCTCAGTACATCTACCAGCTGGTTCAGAGGGGAGGAAGAGTCCCGCAGACGCTTCTGTTATAAGGACTTAGAACTGGGAACGCTGTCCTCTGCGATCTCGCTTTCACTCCAGACCCCTTCGCCCTGCCCTCTAGCCACGACTCCGCCTACTCTGCAGAAATTCGGCCCTTCCTCTAGACTGGAGTTGGGCCTGGCTTCCAGGCAGCTTGGTGGAAGAGTTAATGTCACAAAGCGGCCTGACAACATGATGCCAGACAACCCGGGATTCCCCCTGTCCCCCAGTGTCCTGCAAGCTCTGGAGGGGGTTCACTACATAGCAGACCACCTGAGAGCAGAAGATGCTGACTTTAGCGTAAAAGAGGACTGGAAGTATGTTGCTATGGTAATAGACAGAATCTTCCTGTGGATGTTCATCATAGTTTGTTTGCTGGGCACAATCGGACTTTTTCTTCCGCCCTGGCTCGCGGGCATGATCTAAAAAACACCTTAGTGAGTATACTGTATGAACAATAAGGACTTCTAACGTTTAGGCTTCCACTGGAAGAACGCCCCTTCTAGCAGGGAACGTCACGCATGGGGTCAGATGCATGTTTGACAAGGAACGCGGCCTCAAATACCTGACATTTTCTTAGGTCAGTTACTGAAAGGAAAGTCACATATTAAAGGAAGCTTGTCTATGCTTGTATTTGAATGTATAACcctaaatattattgtaaaaattaaaagtgcCAACTGGAAAGGACTACGTTAATTTAACtgattacacaaataaaagctCTGAGGTGGCTATTTC
>XM_043237523.1
GCGGATGGGAGGACGGAGAGAGATGCTCAGTCCGGAGTAAACCCTGGAAACAGCAGGAGCCAGGTCATGAGTGCATCTATACACCCTGTGACACAAATGGAGTTACTCCGGGACGCACATTCTTCTAAAAACCCTCATTTTCGGATGCGTATGGAAATGAATGACACTTCTGTGCAATACGCAACTCGGAATCCGTGTTCCTGATCTTTCGCTGAACAGGTGCGCAGAAAGCGCATTGCCGTGCTTTTTCgcgcagagagaaagaaacttcgttcgagTTCATAAACACGGTGGATTTAAGCTGCTTCGCTCGAAACATTTTAcggaaaattatttttgtcaacacttttttttttttttttttttttgccaacagtgataaatgtaatttaaaacaaaaataaaaacttgacgAGAGCACCTAACCACGACCGGCAGAGGATGCAGAgcatgacagaaaaacacagaaagcaCTGAATTGTACGGAAATGCAGATGAAAGCGTAGAAATGTACTGAAAGTAATTGGCTGTATGATGGAGCGCTTTGAGAATCAGCGGTTCTTCCTGAGGATTTCTCTTCTCTGCATTATCCTATTCTCTTGTTGTGAGAAGACTCATTCACACGCTGAAGATGAActctttaaaaagctgtttgATGGATACAACAAGTGGTCAAGGCCCGTACCAAACACCTCTGATGTTGTCATTGTCAAGTTTGGTTTGTCTATTGCCCAGCTGATTGATGTGGACGAGAAGAATCAGATGATGACAACAAATGTCTGGCTAAAGCAGGAGTGGAACGACTATAAACTACGCTGGAAACCTTCAGACTTCGACAATGTGACTTCCATCAGGGTTCCGTCAGAACTAATCTGGGTCCCGGATATAGTTTTGTACAACAATGCAGACGGAGAGTTTGCGGTGACCCACATGACCAAAGCCCACCTCTTCCACACAGGTAAAGTGCGCTGGGTACCACCTGCCATCTACAAGAGCTCATGCAGCATCGATGTCACCTTCTTCCCCTTTGACCAGCAGAACTGCAAGATGAAATTCGGCTCGTGGACTTACGACAAAGCCAAGATCGACCTGGAGCGCATCGAGAACACGGTGGACTTAAAAGACTACTGGGAGAGCGGCGAGTGGGCCATCATCAATGCCGTGGGCACCTACAACACCAAGAAGTACGACTGCTGCCACGAGATCTACCCAGACATCACCTACTTCTTCATCATCCGCCGTCTGCCGCTCTTCTACACCATAAACCTCATCATCCCCTGCCTGCTCATCTCCTGCCTGACCGTGCTGGTCTTCTACCTCCCGTCAGATTGCGGTGAGAAGATCACGCTGTGCATCTCGGTCCTCCTCTCGCTCACCGTCTTCCTGCTGCTCATCACTGAAATAATCCCCTCCACCTCGCTCGTGATCCCGCTCATTGGCGAATACCTCCTCTTCACTATGATCTTTGTCACCCTGTCCATCGTCATCACCGTCTTCGTGCTTAACGTCCACCACCGCTCGCCCAGCACTCATAAGATGCCCCGTTGGGTTCACTCAGTCTTCTTGGATTTGATCCCGCGGTGGTTGTTTATGCGGAGACCTGCACCGGACAGCCGTCGCAGGCAGAAACTCCTCCTCCTGCAGCGGCAGGGCCAAGGAATGACGTCACGGGTGCTTGGACCGGCAAACGCGACCCTCAGTACATCTACCAGCTGGTTCAGAGGGGAGGAAGAGTCCCGCAGACGCTTCTGTTATAAGGACTTAGAACTGGGAACGCTGTCCTCTGCGATCTCGCTTTCACTCCAGACCCCTTCGCCCTGCCCTCTAGCCACGACTCCGCCTACTCTGCAGAAATTCGGCCCTTCCTCTAGACTGGAGTTGGGCCTGGCTTCCAGGCAGCTTGGTGGAAGAGTTAATGTCACAAAGCGGCCTGACAACATGATGCCAGACAACCCGGGATTCCCCCTGTCCCCCAGTGTCCTGCAAGCTCTGGAGGGGGTTCACTACATAGCAGACCACCTGAGAGCAGAAGATGCTGACTTTAGCGTAAAAGAGGACTGGAAGTATGTTGCTATGGTAATAGACAGAATCTTCCTGTGGATGTTCATCATAGTTTGTTTGCTGGGCACAATCGGACTTTTTCTTCCGCCCTGGCTCGCGGGCATGATCTAAAAAACACCTTAGTGAGTATACTGTATGAACAATAAGGACTTCTAACGTTTAGGCTTCCACTGGAAGAACGCCCCTTCTAGCAGGGAACGTCACGCATGGGGTCAGATGCATGTTTGACAAGGAACGCGGCCTCAAATACCTGACATTTTCTTAGGTCAGTTACTGAAAGGAAAGTCACATATTAAAGGAAGCTTGTCTATGCTTGTATTTGAATGTATAACcctaaatattattgtaaaaattaaaagtgcCAACTGGAAAGGACTACGTTAATTTAACtgattacacaaataaaagctCTGAGGTGGCTATTTC

Function

symbol description
chrna2b Predicted to enable neurotransmitter receptor activity. Predicted to contribute to acetylcholine receptor activity. Predicted to be involved in several processes, including cholinergic synaptic transmission; regulation of membrane potential; and response to nicotine. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in interpeduncular nucleus medulla oblongata; interpeduncular nucleus tegmentum; neurons; and spinal cord. Human ortholog(s) of this gene implicated in autosomal dominant nocturnal frontal lobe epilepsy 4. Orthologous to human CHRNA2 (cholinergic receptor nicotinic alpha 2 subunit).

NR:

description
PREDICTED: neuronal acetylcholine receptor subunit alpha-2-like isoform X1

GO: NA

KEGG:

id description
K05312 CHRNN; nicotinic acetylcholine receptor, invertebrate

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237522.1 True 2496 mRNA 0.48 6 16701043 16710156
XM_043237523.1 False 2487 mRNA 0.48 6 16701043 16710156

Neighbor

gene id symbol gene type direction distance location
LOC122342226 NA coding upstream 83825 16615345 ~ 16617218 (+)
ptprb LOC107709971,LOC107685369,LOC107738449,LOC107575178,LOC107562139 coding upstream 243746 16436391 ~ 16457297 (+)
LOC122342594 LOC107709965,LOC107554744,LOC107700908,LOC107675140,LOC107569318,LOC107757199 coding upstream 273857 16398632 ~ 16427186 (+)
LOC122342597 rab3ip,LOC107709967,LOC107689177,LOC107757202,LOC107675141,LOC107554773 coding upstream 302544 16378633 ~ 16398499 (+)
LOC122342595 NA coding upstream 323102 16374576 ~ 16377941 (+)
rhoj rhoj,LOC107697308,LOC107743974,LOC107701469,LOC107707080,LOC108257930 coding downstream 111957 16822113 ~ 16838424 (+)
six4b six4b,LOC107743978,LOC107589068,LOC107563693,LOC107697301,LOC107701468,LOC107718441 coding downstream 214861 16925017 ~ 16932206 (+)
six1b six1b,six1,LOC107589069,LOC107563694,LOC107697302,LOC108434988 coding downstream 227643 16937799 ~ 16939687 (+)
rtn1b rtn1b,LOC107560379,LOC107697289,LOC107701456,LOC107718426,LOC107743986,LOC107589072,LOC108434986,LOC108257846 coding downstream 289749 16999905 ~ 17026338 (+)
rd3l rd3l,LOC107697292,LOC107560380,LOC107743985 coding downstream 323765 17033921 ~ 17037157 (+)
LOC122343214 LOC107589090,LOC107723504,LOC107697312,LOC107563691,LOC107746370,LOC107701470 non-coding upstream 825 16698521 ~ 16700218 (+)
G29011 NA non-coding upstream 91039 16609724 ~ 16610004 (+)
G28991 NA non-coding upstream 160883 16519411 ~ 16540160 (+)
G28985 NA non-coding upstream 225710 16474743 ~ 16475333 (+)
G28969 NA non-coding upstream 236353 16464445 ~ 16464690 (+)
G29026 NA non-coding downstream 38562 16748718 ~ 16752589 (+)
LOC122342883 NA non-coding downstream 187359 16897515 ~ 16911342 (+)
G29078 NA non-coding downstream 230860 16941016 ~ 16941310 (+)
G29086 NA non-coding downstream 327117 17037273 ~ 17038220 (+)
G29089 NA non-coding downstream 336715 17046871 ~ 17085857 (+)
G28982 NA other upstream 226662 16473898 ~ 16474381 (+)
G28899 NA other upstream 715317 15985219 ~ 15985726 (+)
G28891 NA other upstream 859188 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 1045765 15565499 ~ 15655278 (+)
G28806 LOC107744205,LOC107601002,LOC107687568,LOC107699198 other upstream 1145361 15439334 ~ 15555682 (+)
atp5mj NA other downstream 328263 17038419 ~ 17040830 (+)
G29526 NA other downstream 1590259 18300415 ~ 18301189 (+)
G29545 NA other downstream 1726304 18436460 ~ 18461317 (+)
G29642 NA other downstream 2173023 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 2580064 19290220 ~ 19342911 (+)

Expression


Co-expression Network