ucn3l (ucn3l,LOC107725544,LOC107676913,LOC107595855,LOC107555541,LOC107744883,LOC107690866)


Basic Information

Item Value
gene id ucn3l
gene name ucn3l,LOC107725544,LOC107676913,LOC107595855,LOC107555541,LOC107744883,LOC107690866
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8101251 ~ 8102804 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237530.1
AGTCCAAGCGGATGTTATGAGCAGCCGGGGAGACATCAAACCCACTAAATCACTCTCGTGATTCAATGCGACATTAAGTTGACACCGAGTTGTTGACTCGCTTGCCTTTTTAGTGACACTTTGGGCTCTCGATCCAAAAGTTCTGGTCGACCCAGCAGTGCTTCTCTTCGGAAGACTCTCCTAATTCGAGCAGTGCAGGGCAAAACGATGTGGCTCGCGCGGACCCTCCTCGCTCTGGCACTTCTTTGCGCACCGGTTTCCAGCCTCTGCTTGCCGACGTACGACCCCGTGTCCAACTTTCTTTGCAACAACGAAGTGTTCTCCGAGACGAACGACGACGGGCAGTCGGCAAACTCCCTGCTGGACAGTCTAAACCTCCTGTACAAGTCGGCGCACTCGCTTTCCTCCGAGGAGCCGCGCGAGAGGAGGACGATACCCGCGTCCAAGTACAGATATTTGAGCCAGACGCAGCTCAGGAGTAAACTCTACCGTAACAGTGCGAAGAGCGACCGACGCAGCCAGGTCACCCTTTCCCTCGACGTCCCCACCAACATCATGAACATCCTCTTCAACATCGCCAAAGCCAAGAACCTGCGCGCGAAGGCGGACGACAACGCGCGCTTGCTGGCGCAGATTGGAAAGAGAAAATGAACTCCAACTCATGTCACTAATTTGACTTTAACAGATATTTTTCGTCACCCACTGAGGCATGTTATCTcgaatttaataatgtaataaaagttgttttttttcctccagttgCATAATAAGCAATACTGAAAATGAATGGAACGTGTTAACAGGTGATATTTGGGTTTTGATTTATTACCCACGTTTTGTTCGTGTGTCAGATTTAATGCTGTTTTACaggactttatttaaaattggcTCATTACCCAGCGGGATTGTAAACAATATTGTTTGGTTAATTTTAACTCAAGCTTTAAAGAGACGTAAAGATAGCCTGCGAcgtattttttccccttttcatTAATGCAGTTTCTCTGTTCATCTCAGATGAgattagtattaaaaaaatgactgatcTGCGAGGCAGGCTGCGGATCTGTAAAGTTCTTAAAACTCTGGGTTGATAAAACCGACAgttgaatatttttgtactgaaaataattattttaccgtttaataaataaataaatgcaaatgtaaacaaag

Function

symbol description
ucn3l Predicted to enable corticotropin-releasing hormone receptor binding activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway; cellular response to nutrient levels; and hormone-mediated signaling pathway. Predicted to act upstream of or within digestion. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including brain; endocrine system; liver; retinal ganglion cell layer; and spleen. Human ortholog(s) of this gene implicated in hypertension. Orthologous to several human genes including UCN3 (urocortin 3).

NR:

description
PREDICTED: urocortin-3-like

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0007586 digestion biological_process
GO:0005615 extracellular space cellular_component
GO:0051431 corticotropin-releasing hormone receptor 2 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237530.1 True 1176 mRNA 0.45 2 8101251 8102804

Neighbor

gene id symbol gene type direction distance location
lrguk lrguk,LOC107690848,LOC107744931,LOC107725511,LOC107676907,LOC107555539 coding upstream 66322 8019911 ~ 8034929 (+)
exoc4 exoc4,LOC107555552,LOC107585070,LOC107676929,LOC107690838 coding upstream 81749 7917750 ~ 8019502 (+)
zc3hc1 zc3hc1,LOC107676937,LOC107587167,LOC107690584,LOC107584496 coding upstream 568684 7528337 ~ 7532567 (+)
cax1 LOC107725610,LOC107587166,LOC107676922,LOC107690555,LOC107584270,LOC107729854 coding upstream 581526 7511541 ~ 7519725 (+)
smo smo,LOC107725609,LOC107690544,LOC107729864,LOC107676906 coding upstream 590413 7503572 ~ 7510838 (+)
copg2 copg2,LOC107725548,LOC107676915,LOC107744880 coding downstream 541 8103345 ~ 8112909 (+)
si:dkeyp-38g8.5 si:dkeyp-38g8.5,LOC107595941,LOC107659854,LOC107744947,LOC107690729,LOC107725679 coding downstream 149280 8252084 ~ 8254845 (+)
pkp2 LOC107725677,LOC107659846,LOC107586091,LOC107694692,LOC107589947 coding downstream 357644 8460448 ~ 8474705 (+)
tcp11l2 tcp11l2,LOC107586172,LOC107589958,LOC107694691,LOC107659845,LOC107744901,LOC107725683 coding downstream 372902 8475706 ~ 8482653 (+)
golt1ba golt1ba,golt1b,LOC107725527,LOC107591215,LOC107586262,LOC107659829,LOC108437943 coding downstream 381169 8483973 ~ 8487631 (+)
LOC122342925 NA non-coding upstream 464571 7590561 ~ 7636680 (+)
G26669 pus7l,LOC107591455 non-coding upstream 1012892 7083300 ~ 7088359 (+)
LOC122343425 NA non-coding upstream 1040209 7057424 ~ 7061042 (+)
LOC122342579 NA non-coding upstream 1087590 6985243 ~ 7013661 (+)
G26585 grip1,LOC107587171,LOC107655593 non-coding upstream 1696852 6399167 ~ 6404399 (+)
LOC122342735 NA non-coding downstream 13084 8115888 ~ 8123874 (+)
G26994 NA non-coding downstream 22455 8125259 ~ 8125994 (+)
LOC122342736 NA non-coding downstream 26357 8129161 ~ 8132328 (+)
G27066 NA non-coding downstream 72661 8175465 ~ 8175799 (+)
G27073 NA non-coding downstream 122654 8225458 ~ 8298999 (+)
col7a1l col7a1l,LOC107725642,LOC107744879,LOC107676908,LOC107555540,LOC107592433,LOC108435442 other upstream 502 8041432 ~ 8100749 (+)
ube2h ube2h,LOC107676921,LOC107690610,LOC105888480 other upstream 542762 7532912 ~ 7558489 (+)
akr1b1.1 akr1b1,LOC107725653,LOC107676909,LOC107587163,LOC107591878 other upstream 637878 7413936 ~ 7463373 (+)
G26692 NA other upstream 873814 7187940 ~ 7227437 (+)
vhll NA other upstream 1710324 6388543 ~ 6390927 (+)
G26993 NA other downstream 34934 8137738 ~ 8138439 (+)
G27079 NA other downstream 145108 8247912 ~ 8249223 (+)
stmp1 NA other downstream 380086 8482890 ~ 8483831 (+)
spx spx,LOC107589995,LOC107744902,LOC107694690,LOC107596170,LOC107725633 other downstream 385107 8487911 ~ 8491938 (+)
etnk1 etnk1,LOC107725541,LOC107659837,LOC107694683,LOC107590048,LOC107744908 other downstream 431012 8533816 ~ 8548002 (+)

Expression


Co-expression Network