LOC122343218 (omp,ompa,LOC107735103)


Basic Information

Item Value
gene id LOC122343218
gene name omp,ompa,LOC107735103
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28212246 ~ 28213047 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237532.1
attcttttccaGCAATAAGCATCCGTTGCCTAGTGCTGTAACACATCAAACTCTAGCACTGAATCTCTAGTCGTTCGCTCCTCCTCTTGCTCCCAAAACCCATCCAGAGGCTCAGAGCCCGTGCGACAGAATCAATAAAGTCCCCAACTAACCAGGCTTTTTGCCCCGCGGGGCCACAGCGGCGGGTGGAGATGGAAAGAGGagtgtgagagaggagagagctGATCCAGACGCTCACAAACACCGAGCAGAGGCGCACCGATCCTCCCTGGACTCTCACGCTCACCATCCATGGCTTCAGAGACGGAGCTGAGCTTCAGCGAGGACCTGCAGCTGACCGAGGTCATGCGTCTGAGGGTCCAGTCGCTGCAGCAGAAGGGTCAGAAGCGGCAGGACGGAGAGAGGCTTCTCCTGCCTCACGAGTCCGTTTACCGGCTGGACTTCAGCGAGCAGGACCTGAGCTTCCTCCGCTGGAACGTCAGCCTGCGAGGAACCGGACGCTTCACCGTCACCGGCATCTGCCAGCTCTGGACGCCCGATCTGACCAACCTGATGACCAGGCAGCTGCTGGACCCCATCGGCCAGTTCTGGAGGAACGCCGGGGACCCCGAGGACCTGCCCATCAAGTGTCTGGAGGCGGACATCCAGGAGTTCGGAGAGAGGATCGCGGAGCTGGCCAAAGTGCGGAAAGTCATGTACTTTCTGTTCGCGTTCAAAGAGGGAGCGACCAAAGACAACATCTCCTGCTCTTTGACCTTCGGCAAAAACCACTGAGAGAAGGCACCTCTCCAGGCGTCGCTTC

Function

symbol description
ompa Predicted to act upstream of or within sensory perception of smell and signal transduction. Is expressed in eye; olfactory epithelium; and retinal inner nuclear layer. Orthologous to human OMP (olfactory marker protein).
omp Predicted to be involved in sensory perception of smell. Predicted to act upstream of or within neurogenesis. Predicted to be located in cytoplasm. Predicted to be active in several cellular components, including axon; cytosol; and neuronal cell body.

NR:

description
PREDICTED: olfactory marker protein

GO:

id name namespace
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237532.1 True 802 mRNA 0.59 1 28212246 28213047

Neighbor

gene id symbol gene type direction distance location
LOC122342473 znf362b,LOC107593390,LOC107737708,LOC107565834,LOC107699608,LOC107712695,LOC107671956,LOC108434701 coding downstream 34660 28171251 ~ 28177586 (-)
LOC122342469 si:dkeyp-113d7.1,LOC107727714,LOC107549870,LOC107563030,LOC107665141,LOC103032369 coding downstream 93914 28113502 ~ 28118332 (-)
jupb jupb,LOC107562513,LOC107752531,LOC107549862,LOC107665165,LOC105013272,LOC108438403 coding downstream 174546 27981070 ~ 28037700 (-)
wipf2b wipf2b,LOC107752530,LOC107549849,LOC107562512,LOC107665117 coding downstream 235071 27969910 ~ 27977175 (-)
LOC122343310 LOC107752528,LOC107549854 coding downstream 242477 27966309 ~ 27969769 (-)
pkma pkma,LOC107712845,LOC107665073,LOC107595343,LOC107668482 coding upstream 155408 28368455 ~ 28382557 (-)
LOC122342383 NA coding upstream 741301 28954348 ~ 28956291 (-)
LOC122342474 NA non-coding downstream 82438 28127214 ~ 28129808 (-)
G31737 NA non-coding downstream 115755 28095894 ~ 28096491 (-)
G31736 NA non-coding downstream 131865 28080175 ~ 28080381 (-)
G31728 NA non-coding downstream 269442 27941679 ~ 27942804 (-)
G31723 NA non-coding downstream 289070 27920620 ~ 27923176 (-)
G31759 NA non-coding upstream 13367 28226414 ~ 28228301 (-)
G31765 NA non-coding upstream 31943 28244990 ~ 28250107 (-)
LOC122343220 NA non-coding upstream 68992 28282039 ~ 28319833 (-)
G31777 NA non-coding upstream 174194 28387241 ~ 28387769 (-)
G31786 NA non-coding upstream 188658 28401705 ~ 28405804 (-)
LOC122342472 znf384l,LOC107665159,LOC107752514 other downstream 24989 28181566 ~ 28187257 (-)
LOC122342471 si:dkeyp-113d7.10,LOC107753946,LOC107666338,LOC107563029,LOC107727707,LOC107549831 other downstream 81866 28120247 ~ 28130380 (-)
eif1 eif1b,LOC107549864,LOC103043673,LOC107666344,LOC107665169 other downstream 144484 28065297 ~ 28067762 (-)
G31508 LOC106519560,LOC107665151,LOC102211354,LOC101487824,LOC102313318,LOC102779181 other downstream 567514 27642692 ~ 27644732 (-)
G31503 pvrl2l,LOC107549846,LOC107665153,LOC107554349,LOC107752518,LOC107753776,LOC107666334 other downstream 596305 27539355 ~ 27615941 (-)
G31776 LOC107712874 other upstream 150978 28364025 ~ 28365196 (-)
G31868 NA other upstream 631146 28844193 ~ 28846421 (-)
G31890 NA other upstream 760306 28973353 ~ 29012765 (-)

Expression


Co-expression Network