LOC122343226 (parpbp,LOC107744914,LOC107659825,LOC107590919,LOC107593393,LOC107664835)


Basic Information

Item Value
gene id LOC122343226
gene name parpbp,LOC107744914,LOC107659825,LOC107590919,LOC107593393,LOC107664835
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8843207 ~ 8857050 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237543.1
ACAGGCATCGGACCAGTTTATAATAACTTACATCTACTGGCGTCGGTTTTCCCATGTGTTTCACATTACAGACCTAGGACGCGTCTAAATATCAGTGTTGTTCATTTTGTGAACGTTGAATAACGGTGGTTATGGAGGAGAGCCTGAGAACAATGACCAGGGTCTTCAGGAGAGAATGTCACAGGGTGTTAGGCTCTGAGAGGACCTCCATTCAAGGGGCTGACGGGATGCTGATGGTCCTACAGCTCGCTGTGGCTGGGGTCAACAAGCAGGAACGCGGGGACTTCAGTGTTGCTTTGAGTGAAGTCTTGGCTGCCTGGAAATACTTCCTTCTGGATAAGCTCCAGCTATCCCACAACGATATCCCTCTTCCACAAAACTATGACCTCATCCGAAAAGAGTATGACTGCTTTTTGAAACGCACCAATACTGTGGACTTGATTGACGTCTTCATTATGTTCAAGGAGCTTCGGATAAATGAGGACCCCGAGGAGCCCCTAACCGCGATGCAACTGTTTCAGTTTCTCGGCGGTGACAAGGAGAGGACGGAGAAAATGGATTCTCTTCCTGTGTGTCCCGCAACTCCATCTAACAAGCCAGTCTGTAGTGCACAGATACAGAGAGCTGTCAGGAGAGTTTTCTGTTCTTATTTGGGTCTTCTGGTGAACTCTAAGAATGACCTGGCCCTCGCTTACACCCTGGACAACCCCAATCGCTCTCTGGGTCACAGCGCCTTTACTGACCTTAGACATGCTGCCTGTGACAACTCCTCATCTCTCTTCCTGACGGTAACGTCATTTGTCAGGGCCATACAGCTTGGAGGAAAGGGGTACGCCCCGCCTGAGTCTCACCCCTTAAGGAAGCACGTAAAGGGTTTATCGGAGTTTCTCAATTTTGTCGACCAGTGTCAAGATGTTCTGGGAGAAACCCCTAACCCCAGAGAAGCTGGGTCCAAATTGGTGTCTAGTATTCGAGCCGCCCTGGTTAAAGGCCGCAGTAATGGTGACCTGGTGTACCTTGCAGCAGAGGATACAGCCAGAAGTCTCAAGGAAAGAATCGGTCAAATACACACCATGCAGACGCAGTCAGTGGTTGGCACAGGAATCAGTCCAGCAAGGCCCAAAGCCTATGCTATTAACCACTCCACTGCCTATGGTGGCCGTGAGACTGTGAAGGTTCTGATGACTCTTTTGGATGAAGAAGCGCTAGCACCGCCCTGCAGGAACAAGGCGGAGCTGCTCTCTGAAGATCATGCCGTTCCTAATGGCAGCTCTGGAGCTTGTCTTCTTACCCTTTACAAGTCTCCAGAAGCTCCCACGGGATCTTCTCCAAAGCCTTTACGGAACCGCGTCTTGAGCCAACAAGAACACATCCAGTCCAAGgTTATGCGGCCAACCATCCGCTCTCAGTTTGCATGCACATACAGTGATGATGAGCTGCCCCTCAACCGAGTGTTGGAGTTTCCCAGCACCAGCCAGCTTCCCACCTGTCTGCACCCTGCACCCAAAAAACCCGTCCCTCATGACCTCACTGGGATGGACATCAGTCTCAAAGACCCAGAGGACACTAACTTAAGGCGTAAATGTCCCGGCCAATCCGCTTTGGGGGAACATAGTGGGAATGCCTGGAACAGAGCAGGTGGGAAGGGGACCCAGCCAGAACAGCTCAGAAGAGCAACCGGGACCTCAAAGAGAAAGCTTGCCAATAGAGAGTATGCTGAGCAAGGAAGAGAAGAGAACCAGCCCCCTCAAAAAAGACCCCCTACCAAGGCTCCCACTGGAGGCCCGGGGAAAAGGAACACTAAAGCTGCATGCAAGAAGCTCATCGCTGGACAGGGCAAACTCACTGGCTTTTTCAGACTATAATTTAGGCTCTACTGACCAATGATGATCTGTTTTGGCAATTATGtcaggttttatttattagtagaatgcttaaatgcatttaaagaggtagttttttttttctcctaaatgttgttctaaaccttttgtttttagGTGGAATTGCCATTACtgacggtgtgtgtgtttgtgtttgtgcatgtttgaGCTTTTAAAAGGAGAAGATTCGTTGGCAGAGAAGAAACTCGATCATTTAATTTTAGGATTTTGTGATGGTCGTGATTTAATGCTTTTTGTTCCCCTTTGAACATGACTCATACTTTTGCagatttgaatacatttttatttaaattctttttaaatc
>XM_043237544.1
aaccacTTTATTGTTTTGGGTGGAGAGTAGGGATACAGTGAATGCTTGGCAACCGAAATAAGCCGGAAAAAAATATGCCGAACAAAATTTGATCAAACATATTGGCTgtgtaaaagcattttaaaaagtctgaGAAAGATGTTACAATCATTACAAGCGCACGCAGCGAAATGCCATACTACCATGCAGCTTTCACTGTATTGCAGTATGCTGTGCGCACATTGAACAGTATGTGAATTTTCTGTATGCGCGAAAGGCCCAGAGGCAATAtttgaaaagagaaaataaaaaggccacttaataatacagtgtttaattaaaagccAGTGTTTAGATGTAGGTTTTGGTCCCAATAAATTGgcattcatcatttatttactacTAAAGGTAACAGCCTCCACAGCTGCGCtgaattaatgtttgtgttggTCATGTGACAATCAAGCATACTATATTAGCATGCCACTTCGAACCTGGACTCGACCAGTTCGTCGTTTTTAATCACAAACAGGTGCGTTGGAGCAGGACTGCCAGGTACACCTCCAGGAGTTCATTTTGTGAACGTTGAATAACGGTGGTTATGGAGGAGAGCCTGAGAACAATGACCAGGGTCTTCAGGAGAGAATGTCACAGGGTGTTAGGCTCTGAGAGGACCTCCATTCAAGGGGCTGACGGGATGCTGATGGTCCTACAGCTCGCTGTGGCTGGGGTCAACAAGCAGGAACGCGGGGACTTCAGTGTTGCTTTGAGTGAAGTCTTGGCTGCCTGGAAATACTTCCTTCTGGATAAGCTCCAGCTATCCCACAACGATATCCCTCTTCCACAAAACTATGACCTCATCCGAAAAGAGTATGACTGCTTTTTGAAACGCACCAATACTGTGGACTTGATTGACGTCTTCATTATGTTCAAGGAGCTTCGGATAAATGAGGACCCCGAGGAGCCCCTAACCGCGATGCAACTGTTTCAGTTTCTCGGCGGTGACAAGGAGAGGACGGAGAAAATGGATTCTCTTCCTGTGTGTCCCGCAACTCCATCTAACAAGCCAGTCTGTAGTGCACAGATACAGAGAGCTGTCAGGAGAGTTTTCTGTTCTTATTTGGGTCTTCTGGTGAACTCTAAGAATGACCTGGCCCTCGCTTACACCCTGGACAACCCCAATCGCTCTCTGGGTCACAGCGCCTTTACTGACCTTAGACATGCTGCCTGTGACAACTCCTCATCTCTCTTCCTGACGGTAACGTCATTTGTCAGGGCCATACAGCTTGGAGGAAAGGGGTACGCCCCGCCTGAGTCTCACCCCTTAAGGAAGCACGTAAAGGGTTTATCGGAGTTTCTCAATTTTGTCGACCAGTGTCAAGATGTTCTGGGAGAAACCCCTAACCCCAGAGAAGCTGGGTCCAAATTGGTGTCTAGTATTCGAGCCGCCCTGGTTAAAGGCCGCAGTAATGGTGACCTGGTGTACCTTGCAGCAGAGGATACAGCCAGAAGTCTCAAGGAAAGAATCGGTCAAATACACACCATGCAGACGCAGTCAGTGGTTGGCACAGGAATCAGTCCAGCAAGGCCCAAAGCCTATGCTATTAACCACTCCACTGCCTATGGTGGCCGTGAGACTGTGAAGGTTCTGATGACTCTTTTGGATGAAGAAGCGCTAGCACCGCCCTGCAGGAACAAGGCGGAGCTGCTCTCTGAAGATCATGCCGTTCCTAATGGCAGCTCTGGAGCTTGTCTTCTTACCCTTTACAAGTCTCCAGAAGCTCCCACGGGATCTTCTCCAAAGCCTTTACGGAACCGCGTCTTGAGCCAACAAGAACACATCCAGTCCAAGgTTATGCGGCCAACCATCCGCTCTCAGTTTGCATGCACATACAGTGATGATGAGCTGCCCCTCAACCGAGTGTTGGAGTTTCCCAGCACCAGCCAGCTTCCCACCTGTCTGCACCCTGCACCCAAAAAACCCGTCCCTCATGACCTCACTGGGATGGACATCAGTCTCAAAGACCCAGAGGACACTAACTTAAGGCGTAAATGTCCCGGCCAATCCGCTTTGGGGGAACATAGTGGGAATGCCTGGAACAGAGCAGGTGGGAAGGGGACCCAGCCAGAACAGCTCAGAAGAGCAACCGGGACCTCAAAGAGAAAGCTTGCCAATAGAGAGTATGCTGAGCAAGGAAGAGAAGAGAACCAGCCCCCTCAAAAAAGACCCCCTACCAAGGCTCCCACTGGAGGCCCGGGGAAAAGGAACACTAAAGCTGCATGCAAGAAGCTCATCGCTGGACAGGGCAAACTCACTGGCTTTTTCAGACTATAATTTAGGCTCTACTGACCAATGATGATCTGTTTTGGCAATTATGtcaggttttatttattagtagaatgcttaaatgcatttaaagaggtagttttttttttctcctaaatgttgttctaaaccttttgtttttagGTGGAATTGCCATTACtgacggtgtgtgtgtttgtgtttgtgcatgtttgaGCTTTTAAAAGGAGAAGATTCGTTGGCAGAGAAGAAACTCGATCATTTAATTTTAGGATTTTGTGATGGTCGTGATTTAATGCTTTTTGTTCCCCTTTGAACATGACTCATACTTTTGCagatttgaatacatttttatttaaattctttttaaatc

Function

symbol description
parpbp Predicted to enable DNA binding activity. Predicted to be involved in negative regulation of double-strand break repair via homologous recombination. Predicted to act upstream of or within DNA repair. Predicted to be located in cytoplasm and nucleus. Predicted to be active in chromatin. Orthologous to human PARPBP (PARP1 binding protein).

NR:

description
PREDICTED: PCNA-interacting partner isoform X1

GO:

id name namespace
GO:2000042 negative regulation of double-strand break repair via homologous recombination biological_process
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237543.1 False 2208 mRNA 0.48 11 8843207 8855299
XM_043237544.1 True 2657 mRNA 0.47 11 8843207 8857050

Neighbor

gene id symbol gene type direction distance location
LOC122343383 LOC107659831,LOC107744910,LOC107664834 coding downstream 39367 8780290 ~ 8803840 (-)
sox5 sox5,LOC107590035,LOC107725540,LOC107744909,LOC107587062 coding downstream 90373 8579051 ~ 8752834 (-)
LOC122342917 strap,LOC107725662,LOC107590065,LOC107744907,LOC107586834,LOC107659840,LOC107694684 coding downstream 310753 8528373 ~ 8532454 (-)
tmpoa tmpoa,LOC107694685,LOC107744905,LOC107725605,LOC107590013 coding downstream 314937 8518034 ~ 8528270 (-)
ldhba ldhba,LOC107659842,LOC107589975,LOC107744904,LOC107725606,LOC107694687,LOC107586539 coding downstream 333641 8504441 ~ 8509566 (-)
pah pah,LOC107695873,LOC107744915 coding upstream 17662 8874712 ~ 8885016 (-)
nrip2 nrip2,LOC107725649,LOC107695877,LOC107588270,LOC107744921,LOC107664860,LOC107590947 coding upstream 120828 8977878 ~ 9000458 (-)
dram1 LOC107725538,LOC107591237,LOC107695863,LOC107664855,LOC107596679,LOC107744952 coding upstream 161280 9018330 ~ 9023432 (-)
chpt1 chpt1,LOC107590206,LOC107725616,LOC107695881,LOC107744925,LOC107664854,LOC107588513,LOC107085961 coding upstream 184963 9042013 ~ 9048831 (-)
mybpc1 mybpc1,LOC107695883 coding upstream 192471 9049521 ~ 9082049 (-)
G27253 NA non-coding downstream 28195 8809767 ~ 8815012 (-)
G27257 NA non-coding downstream 34023 8805244 ~ 8809184 (-)
G27263 NA non-coding downstream 37977 8804155 ~ 8805230 (-)
LOC122343385 NA non-coding downstream 69036 8762099 ~ 8774171 (-)
G27249 LOC107725541,LOC107659837,LOC107590048 non-coding downstream 306531 8533831 ~ 8536676 (-)
G27279 NA non-coding upstream 30136 8887186 ~ 8887953 (-)
G27306 LOC107725624,LOC107744919,LOC107590167,LOC107587911,LOC107664885,LOC107695875 non-coding upstream 103396 8960446 ~ 8961433 (-)
G27417 NA non-coding upstream 146873 9003923 ~ 9004223 (-)
G27425 NA non-coding upstream 166827 9023877 ~ 9024077 (-)
LOC122343442 NA non-coding upstream 472957 9330007 ~ 9341739 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other downstream 325624 8513630 ~ 8517583 (-)
G27232 LOC107589947,LOC107725677,LOC107659846,LOC107586091,LOC107694692 other downstream 375179 8460506 ~ 8468028 (-)
LOC122343432 NA other downstream 593280 8247911 ~ 8249927 (-)
G26951 NA other downstream 1284754 7555115 ~ 7558453 (-)
si:dkey-261e22.4 NA other downstream 1622296 7214334 ~ 7220911 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other upstream 13165 8870215 ~ 8874598 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other upstream 34969 8892019 ~ 8941403 (-)
klhl42 klhl42 other upstream 147210 9004260 ~ 9009304 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other upstream 414922 9271972 ~ 9300179 (-)
zgc:193726 NA other upstream 1498661 10355711 ~ 10363566 (-)

Expression


Co-expression Network