nup37 (nup37,LOC107590136,LOC107695872,LOC107664874,LOC107744917)


Basic Information

Item Value
gene id nup37
gene name nup37,LOC107590136,LOC107695872,LOC107664874,LOC107744917
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8855404 ~ 8865918 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237545.1
TGTCAGATTTATTGCTACGGGGGATTTACAATAAACTGACTTCGTTTCTAATGCCAATCAAAGGCAAACTCGTTCTTTTACTGATATTAATTCGCGCCAGCGTCACGGTTACGTCACTAACCTGGAAGTAAACAAACGCGATCACGTGATCAGAAAGCGCGCCGAGAACGAGCACCGCGTGGGCTTTAACGCAGCGGCGCTCACTTTTTCTCAGCCGGACGATTAACCGAGCATATAAAATTATCCCAGAGTGGAATGTAACTCCATTTCGTCCAAACAGCAAGGATTCACTTGATGGAAGATGCCAGATGAAACGGTTCGCTCTGCAAGCTACACGGTGTCCTGTGAGGACTATGTTCACGCGGTGGAGTTCAGCCCGTTTGACTGTGGCTCACCCGCCTCTCTTCTGGCGTATGGAGGAAACCAGTATGTGGTCGTGGGCACTTGTCGTTTTAAGGAGGAAGACACAGAGGTCGAGGATGTAGAGTTCACTTCTTTGCAAGTGTTTTTTCACGGAGTACGCGTGGATGCTATCGCATGGAGCCCTGAAACACGCCTGGATAAGCTCCCTCGGGTCATCAGgcttTGCACCGCAGCGGCTGACAGAAAAATCAGGCTGTGGACATCTGATCTTCAAAGTAATTGTGAAGTAAAgGTGATGGAAGGTCACACCAGCTACATCAATCATCTAGTGTTTGAGCCTGCAGAAGGAAAGCGAATAGCCTCTGTCAGCGATGACCACACTTGTAGAGTGTGGGACCTTGATGGTAGTGAAACCACTTCATTCAGACTGCGTTCCCCTGGTGTAAGTGTCTGTTGGCACCCTGAGGACATCTGCAAGTTGATGGTGGCGGAGAAGAAAGGCACCATACGGTTCTATGATCTTGTTACACAACACGCAATTCTGTCTCTGGACAGTGGGCAGGTGCCGCTCATGTCAGCTGACTGGTGTCTCACAAACACTGTTAAGGTTGGAGCAGTGGTGGCCAATGATTGGGTGATCTGGGACATTACCCGCTCTAGTTATCCGCTTGAGAAGAGACCAGCTCATGTTGACAAGGCAAGACATTTcagATGGTCACGGGCAAATGAGAATCTTTTCGCTACCACAGGGTATCCGGGAAAAATCAACAGTCAGTTATTGGTGCATCATCTGGGCCATCCACAGCCTGTGATGATTGGTTCTGCATCTGTGGCAGCTGGTCTAAGCTGGCACAGGACCCTGCCTCTATGTGTTATCGGTGGGGATCGAAAGCTGTTCTTCTGGATGACAGAGATGTAACCTGGACAGAAGTCAACTGGAGAGTGTTCCCGTTTTCCtgtttcaataaataaagtcatatttttCATGCACTGTCA
>XM_043237546.1
GTTTTGATTCAAACCACAAGTGGAGATTGTAGACgagaaaagaaagtaaaacgCGGCGATGTGAAGAAACACGAGAGCTAAACCATCCagttaaacaacaaaaaaaaaagtttataggAGCGCAGGGGCAAGTGGAATGTAACTCCATTTCGTCCAAACAGCAAGGATTCACTTGATGGAAGATGCCAGATGAAACGGTTCGCTCTGCAAGCTACACGGTGTCCTGTGAGGACTATGTTCACGCGGTGGAGTTCAGCCCGTTTGACTGTGGCTCACCCGCCTCTCTTCTGGCGTATGGAGGAAACCAGTATGTGGTCGTGGGCACTTGTCGTTTTAAGGAGGAAGACACAGAGGTCGAGGATGTAGAGTTCACTTCTTTGCAAGTGTTTTTTCACGGAGTACGCGTGGATGCTATCGCATGGAGCCCTGAAACACGCCTGGATAAGCTCCCTCGGGTCATCAGgcttTGCACCGCAGCGGCTGACAGAAAAATCAGGCTGTGGACATCTGATCTTCAAAGTAATTGTGAAGTAAAgGTGATGGAAGGTCACACCAGCTACATCAATCATCTAGTGTTTGAGCCTGCAGAAGGAAAGCGAATAGCCTCTGTCAGCGATGACCACACTTGTAGAGTGTGGGACCTTGATGGTAGTGAAACCACTTCATTCAGACTGCGTTCCCCTGGTGTAAGTGTCTGTTGGCACCCTGAGGACATCTGCAAGTTGATGGTGGCGGAGAAGAAAGGCACCATACGGTTCTATGATCTTGTTACACAACACGCAATTCTGTCTCTGGACAGTGGGCAGGTGCCGCTCATGTCAGCTGACTGGTGTCTCACAAACACTGTTAAGGTTGGAGCAGTGGTGGCCAATGATTGGGTGATCTGGGACATTACCCGCTCTAGTTATCCGCTTGAGAAGAGACCAGCTCATGTTGACAAGGCAAGACATTTcagATGGTCACGGGCAAATGAGAATCTTTTCGCTACCACAGGGTATCCGGGAAAAATCAACAGTCAGTTATTGGTGCATCATCTGGGCCATCCACAGCCTGTGATGATTGGTTCTGCATCTGTGGCAGCTGGTCTAAGCTGGCACAGGACCCTGCCTCTATGTGTTATCGGTGGGGATCGAAAGCTGTTCTTCTGGATGACAGAGATGTAACCTGGACAGAAGTCAACTGGAGAGTGTTCCCGTTTTCCtgtttcaataaataaagtcatatttttCATGCACTGTCA
>XM_043237547.1
CATTTTCCGCTGCGCATCTGTTTGCTGACTCTCCGAGAGTGCCTCTTTCATAACTTCAACGGTGAAATGAACGTGTGGGGACCGTGAAGAAATATAAAGAGTTAATCATTACCATACTATTTGTGAGGTTCAGTGAAGATTAAAGTGGAATGTAACTCCATTTCGTCCAAACAGCAAGGATTCACTTGATGGAAGATGCCAGATGAAACGGTTCGCTCTGCAAGCTACACGGTGTCCTGTGAGGACTATGTTCACGCGGTGGAGTTCAGCCCGTTTGACTGTGGCTCACCCGCCTCTCTTCTGGCGTATGGAGGAAACCAGTATGTGGTCGTGGGCACTTGTCGTTTTAAGGAGGAAGACACAGAGGTCGAGGATGTAGAGTTCACTTCTTTGCAAGTGTTTTTTCACGGAGTACGCGTGGATGCTATCGCATGGAGCCCTGAAACACGCCTGGATAAGCTCCCTCGGGTCATCAGgcttTGCACCGCAGCGGCTGACAGAAAAATCAGGCTGTGGACATCTGATCTTCAAAGTAATTGTGAAGTAAAgGTGATGGAAGGTCACACCAGCTACATCAATCATCTAGTGTTTGAGCCTGCAGAAGGAAAGCGAATAGCCTCTGTCAGCGATGACCACACTTGTAGAGTGTGGGACCTTGATGGTAGTGAAACCACTTCATTCAGACTGCGTTCCCCTGGTGTAAGTGTCTGTTGGCACCCTGAGGACATCTGCAAGTTGATGGTGGCGGAGAAGAAAGGCACCATACGGTTCTATGATCTTGTTACACAACACGCAATTCTGTCTCTGGACAGTGGGCAGGTGCCGCTCATGTCAGCTGACTGGTGTCTCACAAACACTGTTAAGGTTGGAGCAGTGGTGGCCAATGATTGGGTGATCTGGGACATTACCCGCTCTAGTTATCCGCTTGAGAAGAGACCAGCTCATGTTGACAAGGCAAGACATTTcagATGGTCACGGGCAAATGAGAATCTTTTCGCTACCACAGGGTATCCGGGAAAAATCAACAGTCAGTTATTGGTGCATCATCTGGGCCATCCACAGCCTGTGATGATTGGTTCTGCATCTGTGGCAGCTGGTCTAAGCTGGCACAGGACCCTGCCTCTATGTGTTATCGGTGGGGATCGAAAGCTGTTCTTCTGGATGACAGAGATGTAACCTGGACAGAAGTCAACTGGAGAGTGTTCCCGTTTTCCtgtttcaataaataaagtcatatttttCATGCACTGTCA
>XM_043237548.1
GAAATGTGTCAGATTTATTGCTACGGGGGATTTACAATAAACTGACTTCGTTTCTAATGCCAATCAAAGGCAAACTCGTTCTTTTACTGATATTAATTCGCGCCAGCGTCACGGTTACGTCACTAACCTGGAAGTAAACAAACGCGATCACGTGATCAGAAAGCGCGCCGAGAACGAGCACCGCGTGGGCTTTAACGCAGCGGCGCTCACTTTTTCTCAGCCGGACGATTAACCGAGCATATAAAATTATCCCAGCAAGGATTCACTTGATGGAAGATGCCAGATGAAACGGTTCGCTCTGCAAGCTACACGGTGTCCTGTGAGGACTATGTTCACGCGGTGGAGTTCAGCCCGTTTGACTGTGGCTCACCCGCCTCTCTTCTGGCGTATGGAGGAAACCAGTATGTGGTCGTGGGCACTTGTCGTTTTAAGGAGGAAGACACAGAGGTCGAGGATGTAGAGTTCACTTCTTTGCAAGTGTTTTTTCACGGAGTACGCGTGGATGCTATCGCATGGAGCCCTGAAACACGCCTGGATAAGCTCCCTCGGGTCATCAGgcttTGCACCGCAGCGGCTGACAGAAAAATCAGGCTGTGGACATCTGATCTTCAAAGTAATTGTGAAGTAAAgGTGATGGAAGGTCACACCAGCTACATCAATCATCTAGTGTTTGAGCCTGCAGAAGGAAAGCGAATAGCCTCTGTCAGCGATGACCACACTTGTAGAGTGTGGGACCTTGATGGTAGTGAAACCACTTCATTCAGACTGCGTTCCCCTGGTGTAAGTGTCTGTTGGCACCCTGAGGACATCTGCAAGTTGATGGTGGCGGAGAAGAAAGGCACCATACGGTTCTATGATCTTGTTACACAACACGCAATTCTGTCTCTGGACAGTGGGCAGGTGCCGCTCATGTCAGCTGACTGGTGTCTCACAAACACTGTTAAGGTTGGAGCAGTGGTGGCCAATGATTGGGTGATCTGGGACATTACCCGCTCTAGTTATCCGCTTGAGAAGAGACCAGCTCATGTTGACAAGGCAAGACATTTcagATGGTCACGGGCAAATGAGAATCTTTTCGCTACCACAGGGTATCCGGGAAAAATCAACAGTCAGTTATTGGTGCATCATCTGGGCCATCCACAGCCTGTGATGATTGGTTCTGCATCTGTGGCAGCTGGTCTAAGCTGGCACAGGACCCTGCCTCTATGTGTTATCGGTGGGGATCGAAAGCTGTTCTTCTGGATGACAGAGATGTAACCTGGACAGAAGTCAACTGGAGAGTGTTCCCGTTTTCCtgtttcaataaataaagtcatatttttCATGCACTGTCA

Function

symbol description
nup37 Acts upstream of or within heart development. Predicted to be part of nuclear pore outer ring. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly. Orthologous to human NUP37 (nucleoporin 37).

NR:

description
nucleoporin Nup37 isoform X1

GO: NA

KEGG:

id description
K14302 NUP37; nuclear pore complex protein Nup37

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237545.1 True 1359 mRNA 0.49 10 8855665 8865918
XM_043237546.1 False 1240 mRNA 0.48 10 8855404 8865918
XM_043237547.1 False 1253 mRNA 0.48 10 8855939 8865918
XM_043237548.1 False 1334 mRNA 0.49 10 8855659 8865918

Neighbor

gene id symbol gene type direction distance location
pmch pmch,LOC107659836,LOC107591230 coding upstream 12154 8841744 ~ 8843250 (+)
igf1 igf1,LOC107659835,LOC107725558,LOC107664880 coding upstream 22772 8821730 ~ 8832632 (+)
bcat1 bcat1,LOC107590116,LOC107725514,LOC107664876,LOC107744911,LOC107587341 coding upstream 40389 8804192 ~ 8815015 (+)
dnai7 casc1,LOC107725557,LOC107659833,LOC107744936 coding upstream 75326 8774288 ~ 8780078 (+)
kiss2 NA coding upstream 351357 8502866 ~ 8504047 (+)
recql recql,LOC107695875,LOC107590167,LOC107725624,LOC107587911,LOC107744919,LOC107664885 coding downstream 88029 8953947 ~ 8961233 (+)
itfg2 itfg2 coding downstream 96688 8962606 ~ 8970594 (+)
cwf19l1 cwf19l1,LOC107695878,LOC107725658,LOC107744920,LOC107664857 coding downstream 144244 9010162 ~ 9015256 (+)
gnptab gnptab,LOC107695880,LOC107664853,LOC107725516,LOC107725515 coding downstream 158559 9024477 ~ 9041856 (+)
LOC122343441 LOC107553872,LOC107593900 coding downstream 451662 9317580 ~ 9323622 (+)
G27162 NA non-coding upstream 102555 8752438 ~ 8752849 (+)
G27121 NA non-coding upstream 350308 8471675 ~ 8505096 (+)
LOC122343529 NA non-coding upstream 478095 8374654 ~ 8377309 (+)
G27084 NA non-coding upstream 524102 8278559 ~ 8331302 (+)
G27073 NA non-coding upstream 556405 8225458 ~ 8298999 (+)
G27301 NA non-coding downstream 87004 8952922 ~ 8953122 (+)
G27345 NA non-coding downstream 188103 9054021 ~ 9057297 (+)
G27347 LOC107590965,LOC107695883 non-coding downstream 191950 9057868 ~ 9058292 (+)
G27352 NA non-coding downstream 203013 9068931 ~ 9076136 (+)
LOC122342713 NA non-coding downstream 212100 9078018 ~ 9081866 (+)
etnk1 etnk1,LOC107725541,LOC107659837,LOC107694683,LOC107590048,LOC107744908 other upstream 307402 8533816 ~ 8548002 (+)
spx spx,LOC107589995,LOC107744902,LOC107694690,LOC107596170,LOC107725633 other upstream 363466 8487911 ~ 8491938 (+)
stmp1 NA other upstream 371573 8482890 ~ 8483831 (+)
G27079 NA other upstream 606181 8247912 ~ 8249223 (+)
G26993 NA other upstream 716965 8137738 ~ 8138439 (+)
ascl1a ascl1a,ascl1,LOC107590149,LOC107664850,LOC107596391,LOC107744950,LOC106576285 other downstream 8799 8874717 ~ 8890176 (+)
washc3 ccdc53,LOC107695862,LOC107590199,LOC107596601,LOC107744922,LOC107664856 other downstream 149923 9015841 ~ 9018333 (+)
apaf1 apaf1,LOC107744928 other downstream 172720 9038638 ~ 9221046 (+)
G27360 anks1b other downstream 297229 9163147 ~ 9227212 (+)
cfap54 cfap54,LOC107695893 other downstream 515624 9381542 ~ 9395757 (+)

Expression


Co-expression Network