CI01000004_10376389_10423302 (DLGAP1A, DLGAP1)



Basic Information


Item Value
gene id CI01000004_10376389_10423302
gene name DLGAP1A, DLGAP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10376389 ~ 10423302 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000004_10376389_10423302.mRNA
ATGAAAGGCTTATCCAGCAGCCGCAGCCACCACCACATGGTGACCTGTGACCCCTCTTTGGACTCCATGGGTCACCACTTGGACCACAAGCCCTACCTCATCAGCCAGATCGACAGCCCCCACCCAGCCGACCATTCTTATTACTCCCAGAGAAGCCCCTACCAGCCTGACTGCGTGGTGCCTTATGGGACCTTTCCCCGCCGACACTATAGCTCTCAGCATGAGCTGAAGGATGAAACTGCTGTGGTTCCTTACACCGGGGGAGGGGTTCCAGCCAACAAGGGCCAACAGCGTCTCCCCATCGCCCTGCTGGATCAGTTCGACCGGCAACTCCCAGTGCCTCGGGACGGCTATCACACACTACAGTACAAGCGTGCCGCCGCAGCCTTGGAGCAACGGAGTGACAGCCCAGGCCGAATCCGGCACCTGGTGCACTCCGTTCAGAAGCTCTTCACCAAGTCCCACTCATTAGAGGGCCCACACCACGGTCATGGCCACGGCAAGGGCAGCATCAACGGAGGCAAGGCCAGCCCCGATGGAGAACCCCCTGCTATTCGGCACCGCAAGCGCAGCAAGAGCCGAGAGCGCTGCAAGTCGGCTGAGCCCAAGAATCGGACGCCACCTTCCGGCTACTGGAGCTCGGATGACTTGGAACGCGAGGCCTGCCTGTTTCACCATGGACCACCAGGCGTCATGACCATGGGCCGTCACCCGGATAAGTCACAGTCACAGTACTTCCTGGAGGCCTACAACACCATCAATGACCAGGCGCTTAAAAACTCCCGCAGCAACAACGATTTGGGCAAGTGCTCGACGTGCACAAGCATCCCGCTGAGCGTGGACGCTTCACAGCTCGTGAAGAAGAGCTCATGGTCGTCCTCTCTCACGGTGAGCAGAGCACGTCAAGTCTACCAGAAGGCCTCGGTAAATGTAGATAAGGCTCTAGTGAAAGCAGAGGCTTGTCAGCAGGAGCGCTCATGCCAATTCTTGCAGTGCACAGGAGGCAGTTCAGATGGCGACATGCACCTTTCAGCAGAGGTGAATGACACAGTGTCACCTCTGACCCTGCAGGTCCCTCAAGATGAGTGGGGGGGCTTTCCGTTGGGAAAGGATGAGGATATCCCATGCAGACGCATGCGCAGCGGCAGCTACGTGAAAGCCATGGCGGAAGATGACAGCGGAGACTCGGACGGCAGCCCTAAACCCTCACCCAAGATGCAGGCACGACGGGCCAGCTACCTCAAAGCCACCCAGCCATCACTGACAGAGATGACTACTCTAAAGATCTCCGCAGAGCACTCTCCAAAGCTGCAGATCCGGAGTCACAGCTACTTGCGGGCGGTGAGTGAAGTTTCCATCAATAGGAGCCTGGACACCCTGGACCCCAAAGCTCTGCTAGCCTCTCCCCAATACCGCTCACGCAACGAGAGCTACATGAGGGCTATGAGCACCATCAGCCAGATCGAGGCAGTGTGTGAGAGTGTGTTCAGTGAAATGGAGTCGCAGGCCGTGGACGCCCTGGACCTGCCCATGCCCGGGTGCTTCCGCATGAGGAGTCACAGTTACGTGCGTGCCATCGACCAGGGCTGCTCGCAGGACGACGAGGGACCTTTACTCCCGGCCTCCCCCCCGAGGACCACTACTACTGTCAGAACTATCCAGAGCAGCACAGTATCGTCATGTATCACCACCTACAAGAAGACTCCTCCACCGGTACCTCCCCGCACCTCCACCAAGCCCTTCATCTCCATCACGGCCCAGAGCAGCACTGAGTCTGCGCAGGACGCTTACATGGACGGCCCTTGTACACGGGGTGAGCCCGTCCTCCACTCCGGCCTGAGCAATTCCACCGAGAGCATTGACAGCATGAAAGCGCTGACGGCAGCCATCGAGGCGGCCAACGCTCAGATCCACGGCCCTGTCAGTCAGCACGTCAGCAACAGCACCATCACCATCAGCACTACCCCGTCCTCTCCGCTGCCCATGCCTGTTCCTGTTCCCGTTCCCATACCCATACCAGCCCTGGAAGATGTCCGCAGGGATGTGCTCAGGAAGAGCAGGTGCCTTTCCATTGGCATCCAGTCCAAGTTCCAGTCAGTGGGAATTCAGGTTGAAGAAGAGCATGGCGTGACGGCAGCAGTGCAGGCTGATCTGGACACTCCGGACTACACACCAGCTGACTCTCCTGTCACAGATTTCCCCTCTTCGGGCTGCTTGTCACGGCAGTACTCGCGTGATGCCGCCACCTCCACCGTCAGTATCCAGGGCTCAGGGAATCATTACCACGCCTGCACCTCAGACGACTATGAGGACGTTGGGTTTGATCCCTCCATCCTGCCTCCACCTGACCCCTGGATTGATAGCGTAACAGAAGATCCCCTGGAAGTCGTGGGCCGCTCAGTGTGCCAGCGTGACGGACGCTGGTTCCTCAAGCTGCTGCAGGCGGAGACAGAGCGCATGGAGGGCTGGTGCAGGCAGATGGAGCATGATGAGAAGGAAAACAAGCTACCGGATGACATCCTGGGGAAGATCCGCAGTGCAGTGGGAAGTGCACAGCTGCTCATGTCCCAGAAGTTTCAGCAGTTCAGGGAGCTTTGTGAGGAAAATCTGAACCCAAATGCTCACCCGCGGCCAGTGGCTCAAGATCTTGCAGGGTTCTGGGACATGCTTCAACTTTCCATCGAGAATATCAGCCTAAAGTTTGATGAGCTTCACCAGCTCAAAGCCAACAACTGGAGACCCCTCGACCCCCCCGAGAGAAAGGAGAGAAGGCTGCCTCCCCCAGTGCCAAAGAAACCCCCAAAAGGCCACCCTCCCCTGGCCAGAGACCGCTCGCTGGAGAGCACCGAGAAGCAGCGTCAAGAGGCGCGCAAGCGCTTGATGGCGGCCAAGCGAGCCGCTTCGGTGCGGCAGAACTCGGCCACAGAGAGCGCAGACAGCATCGAGATCTATATTCCTGAGGCCCAGACCAGACTA

Function


symbol description
dlgap1a Predicted to enable molecular adaptor activity. Predicted to be involved in regulation of postsynaptic neurotransmitter receptor activity. Predicted to act upstream of or within chemical synaptic transmission. Predicted to be located in plasma membrane and postsynaptic density. Predicted to be active in glutamatergic synapse and postsynaptic specialization. Is expressed in central nervous system; olfactory bulb; and olfactory placode. Orthologous to human DLGAP1 (DLG associated protein 1).
dlgap1 Predicted to enable molecular adaptor activity. Predicted to be a structural constituent of postsynaptic density. Predicted to be involved in several processes, including aggresome assembly; regulation of postsynaptic neurotransmitter receptor activity; and regulation of proteasomal protein catabolic process. Predicted to be located in plasma membrane. Predicted to be part of postsynaptic density. Predicted to be active in glutamatergic synapse and postsynaptic density, intracellular component.

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K15008 DLGAP1, GKAP; discs, large-associated protein 1

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000004_10376389_10423302.mRNA True 2976 mRNA 0.59 10 10376389 10423302
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Neighbor


gene id symbol gene type direction distance location
CI01000004_10169407_10212947 CDH18 coding upstream 163200 10169407 ~ 10213189 (+)
CI01000004_10058538_10090881 CDH12A coding upstream 285340 10058538 ~ 10091049 (+)
CI01000004_09980195_09995816 CDH10A coding upstream 380496 9980195 ~ 9995893 (+)
CI01000004_09684489_09685469 MC4R coding upstream 690377 9684489 ~ 9686012 (+)
CI01000004_09627968_09635256 RNF152 coding upstream 740588 9627968 ~ 9635801 (+)
CI01000004_10434104_10435287 PTF1A coding downstream 8531 10431833 ~ 10435569 (+)
CI01000004_10514814_10550774 NA coding downstream 91512 10514814 ~ 10550920 (+)
CI01000004_10582152_10586349 HTR5AB, HTR5A, HTR5AA coding downstream 158819 10582121 ~ 10586553 (+)
CI01000004_10610634_10613290 ENG2B coding downstream 186478 10609780 ~ 10613630 (+)
CI01000004_10630265_10647904 NA coding downstream 206963 10630265 ~ 10647904 (+)
G30681 NA non-coding upstream 31411 10208466 ~ 10344978 (+)
G30515 NA non-coding upstream 469843 9906238 ~ 9906546 (+)
G30505 NA non-coding upstream 486633 9889529 ~ 9889756 (+)
G30447 NA non-coding upstream 560304 9815811 ~ 9816085 (+)
G30395 NA non-coding upstream 613095 9759819 ~ 9763294 (+)
G30688 NA non-coding downstream 12928 10436230 ~ 10447737 (+)
G30780 NA non-coding downstream 30300 10453602 ~ 10454260 (+)
G30787 NA non-coding downstream 51448 10474750 ~ 10474951 (+)
G30689 NA non-coding downstream 270615 10693917 ~ 10697207 (+)
CI01000004_08976512_08980033 TTPA other upstream 1395405 8976254 ~ 8980984 (+)
G28859 NA other upstream 1776786 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 1925162 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 2720006 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 3801968 6570771 ~ 6572667 (+)
G30797 NA other downstream 74074 10497376 ~ 10497788 (+)
G31710 NA other downstream 1213949 11637251 ~ 11642400 (+)
CI01000004_11666900_11667179 NA other downstream 1241471 11666900 ~ 11667659 (+)
G31865 NA other downstream 1768828 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 2219452 12646838 ~ 12652570 (+)

Expression


CI01000004_10376389_10423302(DLGAP1A, DLGAP1) Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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CI01000004_10376389_10423302(DLGAP1A, DLGAP1) Expression in each Bioproject

Bar chart with 36 bars.
CI01000004_10376389_10423302(DLGAP1A, DLGAP1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015509 dlgap1a coding NC_007113.7 CM002886.2 29491314 ~ 29692825 (+)
bowfin (Amia calva) AMCG00019250 NA coding CM030124.1 CM030124.1 10757686 ~ 10778417 (-)