lin7a (lin7a,LOC107755905,LOC107590687)


Basic Information

Item Value
gene id lin7a
gene name lin7a,LOC107755905,LOC107590687
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11338341 ~ 11376262 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237566.1
ctcgctcgctctctccgCCGCCGCCGCCACAGCGCGCGCTGATGCCGCAGCTCCggtctccctctccctctccctctctctctatctctctctgatAATAACACAGCACAGTCATGGCGACAGTGACAGTCCAACCGCTCACCCTGGAGCGAGATGTTGCCAGGGCGATTGAGCTGCTGGAAAAATTACAGGAGTCAGGTGACGTCCCGGGTCACAAGCTGCAATCCCTGAAGAAGGTTCTACAGAGCGAGTTCTGCACGGCCATTAGAGAGGTATACCAATATATGCATGAAACAATAACAGTGAATGGCTGTCCAGAGTATCAAGCACGTGCCACAGCTAAGGCCACAGTGGCTGCATTTGCAGCAAGTGAGGGTCATTCTCATCCGCGAGTGGTGGAGCTGCCCAAGACAGATGAGGGGCTTGGCTTCAATGTGATGGGTGGAAAAGAACAGAACTCACCAATCTACATCTCCCGCATCATCCCAGGGGGCGTGGCTGAGAGGCATGGGGGTCTTAAGAGAGGCGACCAACTACTGTCCGTCAATGGAGTGaGCGTCGAGGGCGAACACCACGAAAAGGCAGTGGAGCTATTGAAAGCGGCCAAGGACAGCGTCAAACTGGTGGTGCGTTACACCCCTAAAGTCCTAGAGGAGATGGAGGCGAGGTTTGAGAAGCTCCGCACCGCCCGCAGacgccagcagcagcagctcctcatgcagcaacagcagcagcaaaacCTGGCCGCCCAGCAGAACCACATGTCGCTGttccaaaagaagaaaaagtagaGGACACTGGGTGAGACTGGCATACTCTCACAGTCGTGATGTAAGGAGGTCCGAGAGATCTCAAAAGAGGACCCTTACTGTTCTCCAGTGAAGACTATCCTCTTTTAGTCAACTACCTACAACTCAAAAAGGTTGAAAACTCCATGATCTGTGTTCCAAATTGGTGCTTGGAAAAATGTACATGATGGAATAAAGGAAAGGCTAGCACTAAGTACATGGTTTTACACTTACTTGTTCATATTTCAGTTGTCTGGAACCAATCGCAAGTTGTGACCCTCTTTAAAAGTCCCTCTTGTAGTTTTGTGATAATGTGTTTTCTCAACATGTATTTCTTCTTAAGCAttcaatgatttgtttttactcTCGTTATATTTATGTTGCCACAGCGCTGTACAGTAACTTTCCGAAAGGTTCTTTTGGTGCTGGGGTCTCCGTGAATAGACAGCGCTTTTTATGTCAGTCGTCCTTGATTGGAAACCACTGAGGTATTTTATACCATATTGTAGCAAGGAATATTTTGTAAAGAAACTAGATTTAGCAATAACACTTGTTTTGTCACATCCTACTGTCAAATTATGgttaaaaagtcaattttagGCACGGAAATGAATCGTATGAAGGTAAAGTTGCTACAAAACTGTATCTTATGCACCATGTGACATAAGTCAGACTAAAGCATAAACATCATTTGCACAAAATGTTCTTACGAGATCAATGTATCACAGTGCCATTGACAGAGATTATCTTGTACATTTGGCATATTGTATCAGCAGACATTTAAAGGTAAAGTGTGTCATTTTTGCAAATACTTTCTCAGATTTCACTTATACCCTAATTAAGTTCGAGTTCGAGACAGGACTTCGCGTTCGAAAACCAATAGTTTTGGAAAGTTGTGTTTTTGGCACAGCAATGACACACTACACCTTTAACAAGTCATGCATTCGTGAGAGCTGTAGAGTTTCGATGGGGTTTTATGGCGTGATGTCACTACTGAAATGAATTCTAATTCAGAAATATTCTATTTAAGTTCAGACgaatattgtaaaatgatttactaTGAGGACAAATGGAATGTCAAACACAGATACATGATATCTACAAACGGAAGCAAATCATTACAtagtattttgttattttaaagttcTATTTTCAAGTTTATTATCTCAGAGGTTTTAAAGATTATCAATTGTGgtgttatttattgttatatttcacACGACCGACCCGCCTCATTCACTAGAACCATCGTAACGTTGTCCCGTTTCGACAATCAGTTTAAAAAGCAAGCATTAAGCCACTGCATTTCGTTTTTCTTTATGAAATTGCGTTTTTATTTCACAGCCTCATTGCCTCAACACAAACTGTCAAAAGCTGGCAAACCGTCTATCCATTGCAGTGCTGTAGTCGTACTGTTAGTTAAAGTCTTATAGAAGCAAAACTGTAAATCAGCAAGTAGTTTAAGACCACCAGTAATCAAAGGTAATATTGTATCTGTGTTATTGTAATTTGATTTAATGGTTTTCCTGACGTAGGACTGGTAGATACTTAAATTAGTTCCTTTGTTGGTTGGTTTATGAGTAATCTCAGACTGTGGGTAACATGTAAGCGTGTCATCCTATAGACAAAATCACTCCAAACAGCCGTGAAGGTGATTTGTTCCTTGATTGTCAATCGATTCATTTCAACTGATTCTCTTCCCTTTTGTATGTTTACTTACAGACTTTCTTATTAATGACTTGCATTTTTGAGGCTGGACAAGCTGATATTATTATacagcggaaaaaaaaaaaaaccaagtgATATGCAATtgttatacatattatatttgtataaataaatatatgtgcgtgtgtgcaaaA
>XM_043237567.1
tcgctcgctctctccgCCGCCGCCGCCACAGCGCGCGCTGATGCCGCAGCTCCggtctccctctccctctccctctctctctatctctctctgatAATAACACAGCACAGTCATGGCGACAGTGACAGTCCAACCGCTCACCCTGGAGCGAGATGTTGCCAGGGCGATTGAGCTGCTGGAAAAATTACAGGAGTCAGGTGACGTCCCGGGTCACAAGCTGCAATCCCTGAAGAAGGTTCTACAGAGCGAGTTCTGCACGGCCATTAGAGAGGTATACCAATATATGCATGAAACAATAACAGTGAATGGCTGTCCAGAGTATCAAGCACGTGCCACAGCTAAGGCCACAGTGGCTGCATTTGCAGCAAGTGAGGGTCATTCTCATCCGCGAGTGGTGGAGCTGCCCAAGACAGATGAGGGGCTTGGCTTCAATGTGATGGGTGGAAAAGAACAGAACTCACCAATCTACATCTCCCGCATCATCCCAGGGGGCGTGGCTGAGAGGCATGGGGGTCTTAAGAGAGGCGACCAACTACTGTCCGTCAATGGAGTGaGCGTCGAGGGCGAACACCACGAAAAGGCAGTGGAGCTATTGAAAGCGGCCAAGGACAGCGTCAAACTGGTGGTGCGTTACACCCCTAAAGTCCTAGAGGAGATGGAGGCGAGGTTTGAGAAGCTCCGCACCGCCCGCAGacgccagcagcagcagctcctcatgcagcaacagcagcagcaaaacCTGGCCGCCCAGCAGAACCACATGTCGTAGGCTGttccaaaagaagaaaaagtagaGGACACTGGGTGAGACTGGCATACTCTCACAGTCGTGATGTAAGGAGGTCCGAGAGATCTCAAAAGAGGACCCTTACTGTTCTCCAGTGAAGACTATCCTCTTTTAGTCAACTACCTACAACTCAAAAAGGTTGAAAACTCCATGATCTGTGTTCCAAATTGGTGCTTGGAAAAATGTACATGATGGAATAAAGGAAAGGCTAGCACTAAGTACATGGTTTTACACTTACTTGTTCATATTTCAGTTGTCTGGAACCAATCGCAAGTTGTGACCCTCTTTAAAAGTCCCTCTTGTAGTTTTGTGATAATGTGTTTTCTCAACATGTATTTCTTCTTAAGCAttcaatgatttgtttttactcTCGTTATATTTATGTTGCCACAGCGCTGTACAGTAACTTTCCGAAAGGTTCTTTTGGTGCTGGGGTCTCCGTGAATAGACAGCGCTTTTTATGTCAGTCGTCCTTGATTGGAAACCACTGAGGTATTTTATACCATATTGTAGCAAGGAATATTTTGTAAAGAAACTAGATTTAGCAATAACACTTGTTTTGTCACATCCTACTGTCAAATTATGgttaaaaagtcaattttagGCACGGAAATGAATCGTATGAAGGTAAAGTTGCTACAAAACTGTATCTTATGCACCATGTGACATAAGTCAGACTAAAGCATAAACATCATTTGCACAAAATGTTCTTACGAGATCAATGTATCACAGTGCCATTGACAGAGATTATCTTGTACATTTGGCATATTGTATCAGCAGACATTTAAAGGTAAAGTGTGTCATTTTTGCAAATACTTTCTCAGATTTCACTTATACCCTAATTAAGTTCGAGTTCGAGACAGGACTTCGCGTTCGAAAACCAATAGTTTTGGAAAGTTGTGTTTTTGGCACAGCAATGACACACTACACCTTTAACAAGTCATGCATTCGTGAGAGCTGTAGAGTTTCGATGGGGTTTTATGGCGTGATGTCACTACTGAAATGAATTCTAATTCAGAAATATTCTATTTAAGTTCAGACgaatattgtaaaatgatttactaTGAGGACAAATGGAATGTCAAACACAGATACATGATATCTACAAACGGAAGCAAATCATTACAtagtattttgttattttaaagttcTATTTTCAAGTTTATTATCTCAGAGGTTTTAAAGATTATCAATTGTGgtgttatttattgttatatttcacACGACCGACCCGCCTCATTCACTAGAACCATCGTAACGTTGTCCCGTTTCGACAATCAGTTTAAAAAGCAAGCATTAAGCCACTGCATTTCGTTTTTCTTTATGAAATTGCGTTTTTATTTCACAGCCTCATTGCCTCAACACAAACTGTCAAAAGCTGGCAAACCGTCTATCCATTGCAGTGCTGTAGTCGTACTGTTAGTTAAAGTCTTATAGAAGCAAAACTGTAAATCAGCAAGTAGTTTAAGACCACCAGTAATCAAAGGTAATATTGTATCTGTGTTATTGTAATTTGATTTAATGGTTTTCCTGACGTAGGACTGGTAGATACTTAAATTAGTTCCTTTGTTGGTTGGTTTATGAGTAATCTCAGACTGTGGGTAACATGTAAGCGTGTCATCCTATAGACAAAATCACTCCAAACAGCCGTGAAGGTGATTTGTTCCTTGATTGTCAATCGATTCATTTCAACTGATTCTCTTCCCTTTTGTATGTTTACTTACAGACTTTCTTATTAATGACTTGCATTTTTGAGGCTGGACAAGCTGATATTATTATacagcggaaaaaaaaaaaaaccaagtgATATGCAATtgttatacatattatatttgtataaataaatatatgtgcgtgtgtgcaaaA

Function

symbol description
lin7a Predicted to enable L27 domain binding activity. Predicted to be involved in maintenance of epithelial cell apical/basal polarity; neurotransmitter secretion; and protein localization to basolateral plasma membrane. Predicted to act upstream of or within exocytosis and protein transport. Predicted to be located in plasma membrane and presynapse. Predicted to be part of MPP7-DLG1-LIN7 complex. Predicted to be active in basolateral plasma membrane; cell-cell junction; and synapse. Is expressed in myotome and nervous system. Orthologous to human LIN7A (lin-7 homolog A, crumbs cell polarity complex component).

NR:

description
PREDICTED: protein lin-7 homolog A isoform X1

GO: NA

KEGG:

id description
K19931 LIN7; protein lin-7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237566.1 False 2650 mRNA 0.42 6 11338341 11376262
XM_043237567.1 True 2653 mRNA 0.42 6 11338341 11376261

Neighbor

gene id symbol gene type direction distance location
rps16 rps16,LOC107590675,LOC103382554 coding downstream 40103 11296296 ~ 11298238 (-)
ppp1r12a ppp1r12a,LOC107749073,LOC107755884,LOC107694147,LOC107680011 coding downstream 62753 11220536 ~ 11275588 (-)
pawr pawr,LOC107694180,LOC107591114,LOC107755907,LOC107734443,LOC107680012 coding downstream 125043 11165268 ~ 11213298 (-)
ints13 asun,LOC107590623,LOC107738827,LOC107589038,LOC107733003 coding downstream 652390 10676477 ~ 10685951 (-)
napepld napepld,LOC107738826,LOC107694176 coding downstream 692582 10637783 ~ 10645759 (-)
hcls1 hcls1,LOC107755885,LOC107694186,LOC107710670,LOC107680042,LOC105023407,LOC103459100 coding upstream 198913 11575175 ~ 11582303 (-)
golgb1 golgb1,LOC107694188,LOC107755883,LOC107590726,LOC107710669,LOC107590960 coding upstream 206500 11582762 ~ 11602022 (-)
orc5 orc5 coding upstream 231048 11607310 ~ 11617489 (-)
kdm7aa LOC107694190,LOC107590789,LOC107710674,LOC107590966,LOC107680036 coding upstream 314860 11691122 ~ 11710502 (-)
cd36 cd36,LOC107590984,LOC107680017,LOC107694198 coding upstream 409084 11785346 ~ 11792920 (-)
G27974 syt1a,LOC107590640,LOC107694178,LOC107734425 non-coding downstream 78858 11126502 ~ 11259483 (-)
LOC122342624 LOC107694146 non-coding downstream 405940 10930597 ~ 10932401 (-)
G27940 NA non-coding downstream 618057 10714630 ~ 10720284 (-)
G27910 NA non-coding downstream 678367 10649898 ~ 10659974 (-)
G27894 lrtm2a,lrtm2,LOC107738823,LOC107590570,LOC107694175,LOC107732983 non-coding downstream 775569 10446435 ~ 10562772 (-)
LOC122343274 NA non-coding upstream 242188 11618450 ~ 11648423 (-)
G28029 NA non-coding upstream 309470 11685732 ~ 11688800 (-)
G27987 sema3c,LOC107710663,LOC107755880,LOC107680038,LOC107694195 non-coding upstream 404697 11780959 ~ 11804910 (-)
LOC122342677 NA non-coding upstream 418021 11794283 ~ 11820297 (-)
G28033 NA non-coding upstream 422304 11798566 ~ 11815305 (-)
dcp1b dcp1b,LOC107590561,LOC107738825,LOC107733007,LOC107589040,LOC107699046,LOC107694173 other downstream 804798 10524531 ~ 10533543 (-)
cacna2d4a cacna2d4a,cacna2d4,LOC107694142,LOC107738821 other downstream 816092 10484922 ~ 10522249 (-)
zgc:193726 NA other downstream 974775 10355711 ~ 10363566 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other downstream 2038162 9271972 ~ 9300179 (-)
klhl42 klhl42 other downstream 2329037 9004260 ~ 9009304 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other upstream 38458 11414720 ~ 11573766 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other upstream 277208 11653470 ~ 11683862 (-)
magi2a magi2a,LOC107680009,LOC107755877,LOC107591172,LOC107694149,LOC107590979 other upstream 465703 11841965 ~ 11996639 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other upstream 638369 12014631 ~ 12015767 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other upstream 1089350 12465612 ~ 12489181 (-)

Expression


Co-expression Network