rad51ap1 (LOC107658893,LOC107579575)


Basic Information

Item Value
gene id rad51ap1
gene name LOC107658893,LOC107579575
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1680949 ~ 1683573 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237568.1
ttatcagttACCTAGTGTAAAACTGCAGTCACAACGATAGAAAAGATTGTATTGAATTGCAAATAAGTGTATTCAGATAGATTTCCGTCGTTTGTTTTCAGGCGGGTGGCGCGAGTGTATATGGACTCGCACCAAAAtcacatgcatttaaaacttaTGACACAACCACAGACTTTCTAATTGGTATTATGCTTTTAAACTTACTGGTAATTTGATTGTTGGTTGTTGTGCAGTATAACGTTGAGCAGCTTCAAAACGTTGTTAAATTACAGCGGTGGTGTCTGAATGTATATTCACGGGTCATAACTTGACATATTAGTTTAACTTTTTTGATTTGAAGAATGGATCGACCAACCAGAAATAAGAAAACTGTCAACTACACAGACTTCCAAGACGACGATGATGAGGATTTTGCCTGTGTAAAACCTCCTCCCAAAAAAGCTCGAACGGCCATAAAAGACCAGGATTCTGAGAGCCACCGCAAAACTGCAAGTGCCTCTCCAAATGATGTTGTTGATCTTACCAGCTCAGGACACAAGAAGAGGGCGTCTCTGGAGGATACATTTTGTGACAGAGATTTAGAGACAGCTCTATCTTTATCGTTGCTGGACTCTTTAAGAACACAGGATGGAGATCCTGCAACCAAAACAGATGAATATGACAGTTCTCAGCCTCCTCAGTGTTCACCACCTGTTTTAATACACTGCAGCTCCGAGGGCAGCCATTTagTCTGTGATGGTCAGCCTCGTCCAAATTCTCCTCCTGTGCTGTCCAATTGTAGCATTGATGGCAGTAGTTTAGGGCTGAATCTGATCAGTGTAGATGCCTCCCCTACCAGTATTTCTAAGCAGAAGGACACTTCAGAGGAGCAGAGAAAACCACCAAAGGAGAAGAAGGACAACCAAGACGATGAGGACTACCAGCCTCAGAACACACCAGATTCAGAAAGTGATGCAGACTTTACTGAAGAAGATGAGAGCGAAGACGAGACGTTCACTACAAAAAAGAAGGTTGTGAaacagaagacagaaaaaaagaaaccaccAGCTGCAAAGAACAAGgcagaaaagaaagacaaaaagccAACGAAATCTTCAAAAGCCAAAGGCtcagCTCCCAACTCCGTTCTCTGCCGGAGTCCTGCCGCTCCGGTGTGTGGAGCGAAGAAGACACCTACTTCTCCGCTTCTCTCTAAACCTGCAGTGTGCTCCAGTCCTTCAGGGGCCAGGCTGCCTAAGTGGAATCCCCCTGGTCTGCTTGGCCGCAGCCCCGGTGCATCTCAGAATGCACACGTGAAGTCTCCAGGACAGGGGCTGCGTTTAGGACTTTCTCGTATGGCTCGAGTCAAACCTCTTCACCCCAATGCTGCAATCTAAATGGActtgttttaaattttgtaGCCTTACAAATGGCTTTTGGGAACTCATAGTGCATGGGACAGGAAAAAACATGGTAAGAAGGAATGgatattttttactgaaatatttccAGAATTTAAGACGTCCCTCTTTTATCCCAGTAATATGTAACAACcgtttttgttgtgcttttaatatttgtttatgtcCTTTCATAGTGTGTTTTAGCTTTGTAAATATGCactttttgataaataaaga

Function

NR:

description
PREDICTED: RAD51-associated protein 1-like isoform X1

GO:      GO:0043566

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237568.1 True 1619 mRNA 0.43 10 1680949 1683573

Neighbor

gene id symbol gene type direction distance location
LOC122343487 LOC107583996,LOC107658917,LOC107725944,LOC107656399,LOC107579452,LOC107579492 coding downstream 2337 1675202 ~ 1678612 (-)
LOC122343486 LOC107583996,LOC107725944,LOC107658917,LOC107579452,LOC107656399,LOC107579492 coding downstream 10803 1666645 ~ 1670146 (-)
si:ch211-214j24.14 LOC107658910,LOC107579438,LOC107725940 coding downstream 22684 1655036 ~ 1658265 (-)
si:ch211-214j24.10 si:ch211-214j24.10,LOC107725935,LOC107711484,LOC107583983,LOC107656420,LOC107579683,LOC107658903 coding downstream 52294 1625295 ~ 1628655 (-)
apex1 apex1,LOC107658891,LOC107725930,LOC107583973,LOC107656416 coding downstream 59068 1618977 ~ 1621881 (-)
fgf23 fgf23,LOC107658906,LOC107583986,LOC107656424,LOC107725936,LOC107710109,LOC107579742 coding upstream 1556 1685129 ~ 1687279 (-)
fgf6b fgf6b,LOC107656433,LOC107583988,LOC107658909,LOC107725939,LOC107579852,LOC107710108 coding upstream 9978 1693551 ~ 1697391 (-)
tigarb tigarb,LOC107725934,LOC107710107,LOC107579711,LOC107583984,LOC107658904,LOC107656422 coding upstream 21876 1705449 ~ 1708797 (-)
vegfab vegfab,LOC107658905,LOC107726022,LOC107710132,LOC107656377,LOC107579754 coding upstream 167670 1851243 ~ 1862194 (-)
tmem63a tmem63a,LOC107726051,LOC107583960,LOC107658879,LOC107710129,LOC107656375 coding upstream 223921 1907494 ~ 1917150 (-)
G25127 NA non-coding downstream 14812 1665838 ~ 1666137 (-)
G25126 cecr1b,LOC107656410,LOC107711479,LOC107583967,LOC107725927,LOC107581132 non-coding downstream 17049 1663073 ~ 1663900 (-)
G25125 LOC107583967,LOC107658918,LOC107725927,LOC107656410,LOC107711479 non-coding downstream 18342 1662345 ~ 1662607 (-)
G25124 NA non-coding downstream 19561 1660605 ~ 1661388 (-)
G25098 NA non-coding downstream 103224 1577201 ~ 1577725 (-)
G25133 NA non-coding upstream 4785 1688358 ~ 1688894 (-)
G25134 NA non-coding upstream 5435 1689008 ~ 1692325 (-)
G25137 NA non-coding upstream 32338 1715911 ~ 1716264 (-)
G25152 NA non-coding upstream 65805 1749378 ~ 1752092 (-)
G25153 NA non-coding upstream 68786 1752359 ~ 1753641 (-)
ccdc167 ccdc167 other downstream 26123 1653591 ~ 1654826 (-)
zgc:113263 LOC107658878,LOC107583959,LOC107725918,LOC107656382,LOC107711463 other downstream 62651 1609360 ~ 1618298 (-)
selenoo2 selenoo,si:dkey-14d8.2,LOC107579362,LOC107711485 other downstream 76259 1594284 ~ 1604690 (-)
LOC122342802 LOC107711465,LOC107656235 other downstream 94760 1580480 ~ 1586189 (-)
ptprz1b ptprz1,ptprz1b,LOC107725913,LOC107656236,LOC107658935,LOC107581028 other downstream 357552 1289314 ~ 1323397 (-)
rsph9 rsph9,LOC107658900,LOC107583979,LOC107579672,LOC107710090,LOC107656226 other upstream 214830 1898403 ~ 1902663 (-)
cald1a cald1a,LOC107583995,LOC107725991,LOC107658884,LOC107656362,LOC107710121 other upstream 359380 2042953 ~ 2088579 (-)
tnni4a zgc:101560,LOC107725970,LOC107584059,LOC107658770,LOC107656258,LOC107581287 other upstream 407778 2091351 ~ 2097801 (-)
dock4b dock4b,LOC107656358,LOC108425388 other upstream 616062 2299635 ~ 2375716 (-)
LOC122342907 NA other upstream 788711 2472284 ~ 2473068 (-)

Expression


Co-expression Network