hif1ab (hif1a,LOC107589062,LOC107743977,LOC107563689)


Basic Information

Item Value
gene id hif1ab
gene name hif1a,LOC107589062,LOC107743977,LOC107563689
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16868461 ~ 16881395 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237577.1
TGAACGCGCGGGCCACGGAGCGAGCAGAGCGGCGCAGACGCGGTTAACTCTTTGTACCGACCACAAGCTGCACCGACCGGTGCTGGACAAATGCTTTGACCTTCAGCGAGCCGGAGGGTTGATCTCCACCATTCAAACGTTTTCGACACACCGCACCGGACTAGCATCGGACCGTTTTGCCGCGACTGCTCGTTTTCTTTCGGAAAcgcatttttaattgttagcGAGAGGTGGCCACGTCCTTGATTTCTCTGGCCTCTCGGTTTGGAAAAACCTAACACATTCTGAGTGGTTTCACCCAGGAATGGATACTGGAGTTGTCACTGAAAAGAAAAGGGTGAGCTCGGAGCGCAGGAAGGAGAAGTCCAGGGATGCAGCGCGATCTCGCAGGGGCAAGGAGTCCGAGGTGTTCTACGAGTTAGCACACCAGCTCCCCCTGCCACACAATGTCACCTCCCACCTGGACAAGGCGTCCATCATGAGGCTGACCATCAGCTACCTGCGCATGAGGAAGCTGCTCGGCTCTGATGAATCAGAGAAGGAGAATGAGCTGGAGAGTCAGTTAAACAGCTTTTATCTGAAGGCCCTGGAGGGTTTTCTCATGGTCCTGTCTGAAGATGGAGACATGGTTTATCTCTCTGAGAATGTCAGCAAGAGCATGGGCCTCACACAGTTTGATCTGACTGGTCACAGCATCTTTGAATTTTCACATCCATGTGACCACGAGGAGCTGAGAGAAATGCTTGTCCACAGGACAGGATCCAAAAAGACCAAGGAACAAAACACAGAGCGCAGCTTCTTCCTGCGCATGAAGTGCACGCTTACTAGCAGAGGGCGCACTGTCAATATCAAGTCTTCTACATGGAAGGTTCTTCACTGCACCGGTCATGTGCGTGTGCAGGAGCGCGCCGAGGGCTCGGGAGACTCTGGCTTTAAAGAGCCTCCTCTGACCTACCTTGTGGTCATCTGTGAGCCCATTCCTCATCCCTCGAACATCGAGGTGCCTCTGGACAGCAAGACCTTCCTTAGCCGTCACACTCTGGATATGAAGTTTTCATACTGCGATGAAAGGATCACAGAGCTGATGGGATATGAGCCAGATGATCTGCTGAACAAGTCTGTGTACGAATACTATCATGCCCTGGATTCAGATCACCTTACCAAGACACATCACAACTTGTTCGCAAAGGGCCAGGCCACCACAGGCCAGTACCGCATGCTGGCTAAGAAAGGTGGTTTCGTGTGGGTGGAGACTCAAGCCACCGTTATCTACAACCCCAAGAATTCTCAGCCACAGTGCATTGTGTGCGTCAATTACGTTCTCAGTGGCATTGTGGAAGGGGACGTTGTCCTGTCCTTGCAGCAGACCGTGTCCGAGCCCAAGGCTGAGGAGAAAGAGAACGAGGAGATGGAAGATGAGGCCTCTGAGGTGGACATACTCAAACTCTTCAAGTCAGAAAGCCTCAAGTGTCCCATGAAGAGCCCTGACCTGTATGAGAAGCTGAAGGAGGAGCCTGAGGCTCTCACTGTGTTGGCACCTGCTGCAGGAGACACCATCATCTCTCTAGACTTCAACAACTCAGATTCTGATATACAGCTGATGAAGGAGGTGCCCCTCTACAATGATGTCATGCTGCCCTCCAGCAGCGAGAAGCTGCCCATCAGTCTGTCTCCTCTGACCCCCAGCGACTCCACTCCGGTTCTGACCAAAATAGAGACCGATTTCCCTTTCAGCTCTCCTGATCGTGGTCCAGACTCCACAAACGCACCTTCCACATCTGGACTGGGCTCCTCGGAGccCAACAGCCCCATGGATTACTGTTTCCAGGTAGACTCAGACATCGGTTCTGAACCACTGGACCTGGTTGAGAAACTCTTTGCTATTGATACTGAGGCAAAGACCCCTTTTAGCTCCCAGACCATGGAGGACCTCGACCTAGAGATGCTGGCTCCATACATCCCCATGGATGACGACTTCCAGCTGCGCATCCCCTCTCCACTGGATCCGCTGCCGTCTGGCCCTCACTCCGTGTCAGCCATGAGCTCCCTGTTCCAGCCCTTACCCTCCCCCGCGTCTCCAGCCTCTTCCTCCAGCAGCACAGCGAAACAGGAGGCGTCATCTCGGGCGCCTTCGCCCCTGCACCTTCTGCAGGAGGTTTGCAATGCACCCGTCTCACCCTTCAGTGGCAGTCGGGACGTTTCACCTGCTCGGTCCCCCACCCCACAGAGCAGCAATCAGCTCAACAACAGAGAGCTGTCTCCAAAGATGTTAGCTATCCAGAACGCCCAACGTAAAAGGAAGCtggaggaagtgacatcacttTCTGAGGCTATTGGATTGAGTGCTTTGCTTCAGAGTGTGGACAGTGCTATAGAGCCTGGCAAGAGGGCTAAGGTTTTAGAGGTTAAAGGATCGAGTGTTCTTGGAGGAAACAAAACCATTCTCATACTGCCCTCTGACGTGGCCAGTCGTCTGCTGTGCAGCTCTTTAGAGAGCAGCAGCGGGCTGCCTCAGCTAACACGCTACGACTGCGAAGTCAACGCTCCTGTGCAGGACCGCCATCATCTGCTGCAGGGAGAGGACCTCCTGCGTGCTCTGGACCAAGTCAACTGAGCTTTGCTGTGTTTAGCAATTCCGGACACTGcatctctccccctctctctttttctctctctctctctctctctctctctctttctctctttctctcgctcctTGGCCCGACCCCATCACTGAAATCTGCCTCCACTTGTCTCCTTTTATTCCAAGCCCTAATATTCTCTACAAACccaagtgttttaaaaatgtactagaTGACCTGCACCTTCCATTGATCTCACCAGTGAGCCCAGAGGgagtccatccatccatccatcccagTGTGTAGAgcctggaggaggaggaggagcgtAATGTAACTTAACAGTGGCATCAACCAGACAAGAGTTATGAGCCTTAATGTGAAATGCACACTGACGCACAGATGCTGATGCGTACAATCTCCCACGCTCCCTCTGGATTCCCTAATTTTACCTAAAAACCCATCCGTTGTGTTTTACGCCCCTCCCCAAAGCGTGTGTATTGTAGCTACAGTCGCACAATAATCTATTTTCTTAAGACAGAATACCAGCAGTCCATGCAATATACGAAACCATTTTTACGAATATGTACTTTTAATGAAAGATtgaacagtttatttttttttctctttcgttGTGTAGAGTCCTTCGCGTGCGCTCACGGGCTCAATGGTTTAACGCTGTTGGATGTTTGCGAGTGTCGCTTTCTTATTTGCTCCCATCACTTTGTTTTCTCTTGAACAGCACAGAAGAATTGTAAAAGAGCCATTGAAAGTAATGATGgatattgtgcaaaaaaaagggAATTAAAAATCATGCTGTGGTGTTCTCATGATGGTTTTTGTCTCAAAGAGGTTAAAACAGATTTATAGTTTAATTATgcaatagatttttatatttttagtggtcatttttttttttttgtttagttctCTTTGTGGTAGATGCTTAAGGTAATTCATGCTTGTGAGATGTCATAGCTGGTaaccgtttttttgtttttgcttcatgAGAGGTTTTAGATCATGCAAAGCTGATGTATCATTTATATCCCAGTTTTACAAGTATTTATAATGGCATTAGAACATGAATGCTTAGTTTTAAGACcatatttgttttcatcatgCTTTCAGCCTGTTGACAAAGTCTTGCAAGTATTTTATGACCTGTTAGCTCGTTTTTCAGTAGgaaagacattttcttttgttattgtgTCCTTCATTTATCTCTGCAGTCCTCTCCTTTTATTCTTAAcactaaatgttttgtttattgcatAATCAGTAAAAGACAATTGTGGACCAGAATTTTGTGATTGTATGTTTCAATTGATgtgacactttttatttttttctatctaGATCTATTAAGTTATTCAGGAGTacattaaattgcatttcaaaCGTAGTGATAGTACACTTCCATGATGCACTTTTTTCAATATCTGGATTAAAGTAAAGGTTCAACTGTCTGGACATTGTAAACAAAGGATGAAATTCTTGGTGAAAAAAACTTATTGGGATAGTTGtgtaatttcaattaaaatttcattaaagaaataagCAGTGAAgcaactttgttttaaaaaca
>XM_043237578.1
GGTGTGACAAATCTTACTTCATGGTGGTGAGCTCGGAGCGCAGGAAGGAGAAGTCCAGGGATGCAGCGCGATCTCGCAGGGGCAAGGAGTCCGAGGTGTTCTACGAGTTAGCACACCAGCTCCCCCTGCCACACAATGTCACCTCCCACCTGGACAAGGCGTCCATCATGAGGCTGACCATCAGCTACCTGCGCATGAGGAAGCTGCTCGGCTCTGATGAATCAGAGAAGGAGAATGAGCTGGAGAGTCAGTTAAACAGCTTTTATCTGAAGGCCCTGGAGGGTTTTCTCATGGTCCTGTCTGAAGATGGAGACATGGTTTATCTCTCTGAGAATGTCAGCAAGAGCATGGGCCTCACACAGTTTGATCTGACTGGTCACAGCATCTTTGAATTTTCACATCCATGTGACCACGAGGAGCTGAGAGAAATGCTTGTCCACAGGACAGGATCCAAAAAGACCAAGGAACAAAACACAGAGCGCAGCTTCTTCCTGCGCATGAAGTGCACGCTTACTAGCAGAGGGCGCACTGTCAATATCAAGTCTTCTACATGGAAGGTTCTTCACTGCACCGGTCATGTGCGTGTGCAGGAGCGCGCCGAGGGCTCGGGAGACTCTGGCTTTAAAGAGCCTCCTCTGACCTACCTTGTGGTCATCTGTGAGCCCATTCCTCATCCCTCGAACATCGAGGTGCCTCTGGACAGCAAGACCTTCCTTAGCCGTCACACTCTGGATATGAAGTTTTCATACTGCGATGAAAGGATCACAGAGCTGATGGGATATGAGCCAGATGATCTGCTGAACAAGTCTGTGTACGAATACTATCATGCCCTGGATTCAGATCACCTTACCAAGACACATCACAACTTGTTCGCAAAGGGCCAGGCCACCACAGGCCAGTACCGCATGCTGGCTAAGAAAGGTGGTTTCGTGTGGGTGGAGACTCAAGCCACCGTTATCTACAACCCCAAGAATTCTCAGCCACAGTGCATTGTGTGCGTCAATTACGTTCTCAGTGGCATTGTGGAAGGGGACGTTGTCCTGTCCTTGCAGCAGACCGTGTCCGAGCCCAAGGCTGAGGAGAAAGAGAACGAGGAGATGGAAGATGAGGCCTCTGAGGTGGACATACTCAAACTCTTCAAGTCAGAAAGCCTCAAGTGTCCCATGAAGAGCCCTGACCTGTATGAGAAGCTGAAGGAGGAGCCTGAGGCTCTCACTGTGTTGGCACCTGCTGCAGGAGACACCATCATCTCTCTAGACTTCAACAACTCAGATTCTGATATACAGCTGATGAAGGAGGTGCCCCTCTACAATGATGTCATGCTGCCCTCCAGCAGCGAGAAGCTGCCCATCAGTCTGTCTCCTCTGACCCCCAGCGACTCCACTCCGGTTCTGACCAAAATAGAGACCGATTTCCCTTTCAGCTCTCCTGATCGTGGTCCAGACTCCACAAACGCACCTTCCACATCTGGACTGGGCTCCTCGGAGccCAACAGCCCCATGGATTACTGTTTCCAGGTAGACTCAGACATCGGTTCTGAACCACTGGACCTGGTTGAGAAACTCTTTGCTATTGATACTGAGGCAAAGACCCCTTTTAGCTCCCAGACCATGGAGGACCTCGACCTAGAGATGCTGGCTCCATACATCCCCATGGATGACGACTTCCAGCTGCGCATCCCCTCTCCACTGGATCCGCTGCCGTCTGGCCCTCACTCCGTGTCAGCCATGAGCTCCCTGTTCCAGCCCTTACCCTCCCCCGCGTCTCCAGCCTCTTCCTCCAGCAGCACAGCGAAACAGGAGGCGTCATCTCGGGCGCCTTCGCCCCTGCACCTTCTGCAGGAGGTTTGCAATGCACCCGTCTCACCCTTCAGTGGCAGTCGGGACGTTTCACCTGCTCGGTCCCCCACCCCACAGAGCAGCAATCAGCTCAACAACAGAGAGCTGTCTCCAAAGATGTTAGCTATCCAGAACGCCCAACGTAAAAGGAAGCtggaggaagtgacatcacttTCTGAGGCTATTGGATTGAGTGCTTTGCTTCAGAGTGTGGACAGTGCTATAGAGCCTGGCAAGAGGGCTAAGGTTTTAGAGGTTAAAGGATCGAGTGTTCTTGGAGGAAACAAAACCATTCTCATACTGCCCTCTGACGTGGCCAGTCGTCTGCTGTGCAGCTCTTTAGAGAGCAGCAGCGGGCTGCCTCAGCTAACACGCTACGACTGCGAAGTCAACGCTCCTGTGCAGGACCGCCATCATCTGCTGCAGGGAGAGGACCTCCTGCGTGCTCTGGACCAAGTCAACTGAGCTTTGCTGTGTTTAGCAATTCCGGACACTGcatctctccccctctctctttttctctctctctctctctctctctctctctttctctctttctctcgctcctTGGCCCGACCCCATCACTGAAATCTGCCTCCACTTGTCTCCTTTTATTCCAAGCCCTAATATTCTCTACAAACccaagtgttttaaaaatgtactagaTGACCTGCACCTTCCATTGATCTCACCAGTGAGCCCAGAGGgagtccatccatccatccatcccagTGTGTAGAgcctggaggaggaggaggagcgtAATGTAACTTAACAGTGGCATCAACCAGACAAGAGTTATGAGCCTTAATGTGAAATGCACACTGACGCACAGATGCTGATGCGTACAATCTCCCACGCTCCCTCTGGATTCCCTAATTTTACCTAAAAACCCATCCGTTGTGTTTTACGCCCCTCCCCAAAGCGTGTGTATTGTAGCTACAGTCGCACAATAATCTATTTTCTTAAGACAGAATACCAGCAGTCCATGCAATATACGAAACCATTTTTACGAATATGTACTTTTAATGAAAGATtgaacagtttatttttttttctctttcgttGTGTAGAGTCCTTCGCGTGCGCTCACGGGCTCAATGGTTTAACGCTGTTGGATGTTTGCGAGTGTCGCTTTCTTATTTGCTCCCATCACTTTGTTTTCTCTTGAACAGCACAGAAGAATTGTAAAAGAGCCATTGAAAGTAATGATGgatattgtgcaaaaaaaagggAATTAAAAATCATGCTGTGGTGTTCTCATGATGGTTTTTGTCTCAAAGAGGTTAAAACAGATTTATAGTTTAATTATgcaatagatttttatatttttagtggtcatttttttttttttgtttagttctCTTTGTGGTAGATGCTTAAGGTAATTCATGCTTGTGAGATGTCATAGCTGGTaaccgtttttttgtttttgcttcatgAGAGGTTTTAGATCATGCAAAGCTGATGTATCATTTATATCCCAGTTTTACAAGTATTTATAATGGCATTAGAACATGAATGCTTAGTTTTAAGACcatatttgttttcatcatgCTTTCAGCCTGTTGACAAAGTCTTGCAAGTATTTTATGACCTGTTAGCTCGTTTTTCAGTAGgaaagacattttcttttgttattgtgTCCTTCATTTATCTCTGCAGTCCTCTCCTTTTATTCTTAAcactaaatgttttgtttattgcatAATCAGTAAAAGACAATTGTGGACCAGAATTTTGTGATTGTATGTTTCAATTGATgtgacactttttatttttttctatctaGATCTATTAAGTTATTCAGGAGTacattaaattgcatttcaaaCGTAGTGATAGTACACTTCCATGATGCACTTTTTTCAATATCTGGATTAAAGTAAAGGTTCAACTGTCTGGACATTGTAAACAAAGGATGAAATTCTTGGTGAAAAAAACTTATTGGGATAGTTGtgtaatttcaattaaaatttcattaaagaaataagCAGTGAAgcaactttgttttaaaaaca

Function

symbol description
hif1a Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; Hsp90 protein binding activity; and enzyme binding activity. Contributes to DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Involved in several processes, including oxygen homeostasis; regulation of gene expression; and vascular endothelial growth factor production. Acts upstream of or within regulation of transcription, DNA-templated and response to hypoxia. Located in chromatin; cytosol; and nuclear body. Part of RNA polymerase II transcription regulator complex. Implicated in lung non-small cell carcinoma; myocardial infarction; prostate cancer; and type 2 diabetes mellitus. Biomarker of several diseases, including arthritis (multiple); invasive ductal carcinoma; kidney cancer (multiple); morbid obesity; and mycosis fungoides.

NR:

description
PREDICTED: hypoxia-inducible factor 1-alpha-like

GO: NA

KEGG:

id description
K08268 HIF1A; hypoxia-inducible factor 1 alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237577.1 True 4170 mRNA 0.47 15 16868461 16881395
XM_043237578.1 False 3859 mRNA 0.47 15 16868461 16879255

Neighbor

gene id symbol gene type direction distance location
snapc1a LOC107743976,LOC107697295,LOC107589064 coding downstream 476 16864505 ~ 16867985 (-)
sgpp1a si:ch211-212g7.6,LOC107697306,LOC107589063,LOC107743975,LOC107716492,LOC107701492,LOC107563688 coding downstream 4038 16852999 ~ 16864423 (-)
ppp2r5ea ppp2r5ea,LOC107701493,LOC107707079,LOC107563687,LOC107697307,LOC107743972,LOC108434994,LOC108257929,LOC103032801 coding downstream 17305 16840705 ~ 16851156 (-)
kcnh5a kcnh5a,LOC107743971,LOC107697309,LOC107563685,LOC107701494,LOC107707078,LOC108434995 coding downstream 46991 16748716 ~ 16821470 (-)
LOC122343211 ptk2bb,LOC107589060,LOC107697310,LOC107701495,LOC107563684,LOC107707077 coding downstream 143667 16710524 ~ 16724794 (-)
six6b six6b,six6,LOC107589092,LOC107743981,LOC107697293,LOC107701490,LOC103035477,LOC108257662 coding upstream 74125 16955520 ~ 16958074 (-)
ppm1ab ppm1ab,LOC107718411,LOC107697300,LOC107701489,LOC107589071,LOC107560378,LOC107743982 coding upstream 105913 16987308 ~ 16993364 (-)
ckbb ckb,ckbb,LOC107560383,LOC107755234,LOC101477834 coding upstream 204067 17085462 ~ 17089500 (-)
LOC122342663 NA coding upstream 242512 17123907 ~ 17130265 (-)
btbd6b btbd6b,LOC107589075,LOC107755235,LOC107718408,LOC107560384,LOC107701487,LOC107683969 coding upstream 256670 17138065 ~ 17143280 (-)
G29021 NA non-coding downstream 166790 16701068 ~ 16701671 (-)
G29012 NA non-coding downstream 258462 16609636 ~ 16609999 (-)
LOC122342602 NA non-coding downstream 317457 16550333 ~ 16551004 (-)
LOC122342601 NA non-coding downstream 322840 16544954 ~ 16545621 (-)
G28970 NA non-coding downstream 403782 16464445 ~ 16464679 (-)
LOC122342882 NA non-coding upstream 26814 16908209 ~ 16924965 (-)
G29127 NA non-coding upstream 74060 16955455 ~ 17026339 (-)
G29143 NA non-coding upstream 157432 17038827 ~ 17040834 (-)
G29179 NA non-coding upstream 337756 17219151 ~ 17219453 (-)
G29212 NA non-coding upstream 467894 17349289 ~ 17349506 (-)
G29022 chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496 other downstream 159501 16707774 ~ 16708960 (-)
G28898 NA other downstream 935597 15932494 ~ 15932864 (-)
kiaa0930 zgc:172139,kiaa0930,LOC107601010,LOC107719873,LOC107687566,LOC107699202 other downstream 1256886 15601440 ~ 15611575 (-)
LOC122342864 rpl34,LOC107566275,LOC107573163,LOC107681344 other downstream 1840798 15024587 ~ 15027663 (-)
LOC122342642 pfkfb3 other downstream 2057750 14808543 ~ 14810711 (-)
prkchb prkchb,LOC107743988,LOC107697294,LOC107701491,LOC107718442,LOC107589067,LOC107563690 other upstream 4758 16886153 ~ 16900295 (-)
G29135 NA other upstream 125532 17006927 ~ 17017823 (-)
xrcc3 xrcc3,LOC107755221,LOC107683971,LOC107560377 other upstream 236948 17118343 ~ 17122129 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other upstream 755628 17637023 ~ 17638742 (-)
LOC122342228 scgn,LOC107693759,LOC107757885,LOC107669120,LOC107714763,LOC107747999,LOC107663245 other upstream 853211 17734606 ~ 17744543 (-)

Expression


Co-expression Network