sgpp1a (si:ch211-212g7.6,LOC107697306,LOC107589063,LOC107743975,LOC107716492,LOC107701492,LOC107563688)


Basic Information

Item Value
gene id sgpp1a
gene name si:ch211-212g7.6,LOC107697306,LOC107589063,LOC107743975,LOC107716492,LOC107701492,LOC107563688
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16852999 ~ 16864423 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237579.1
tttttttgctctacaGAAATGCTTGGATTTtgggttacaaaaaaaaaaacaaatttacaaaaatttaaGTTCGGGGGTTTTATGTTTTCAGAAAGCATTAATGGTGTTTGGTTTAATTATGCAAAGTCCCCCTCTAGtggagaaatgttttttttttttttttttttttaaaagcactgacCCCACTTTTTTCCACAATAGCTACAAGTATGACATAACCTTGTGATCTCCCCACAGTGTAAATGAAATCCTGTAGTGAGGGGAACCCCTTTCATTCGACCACAAAGGTCCCTCTGTGTCCTTCGACGCGCTCCACATTGCCGCAGCACTGTTGTAATCACCATGAGAAAGCCCTGATTCAGCTCTTGATACGGTGTTCCTTTCTGTGAGCTTTAAGTCTAAATAAAACCCACGAGATCTAGTTGTACCAGTGTCATCTTATCCTCAACTCAGAAAGCTGTGTATGCAAAAAACTAGGCCTAAATGACAAATTCTGCATATTGATATTTTACTTGGCTATaatttacagaaacattttttaaaaatgtatacagtcAAAATTGCACAGGctaacattttttacagtagtgGCCAAAATATGTAGTTTACCTTAAGGGGGCGCTCGACCGCTTACTTAAGTGAGCTCAACTGGGTCGCATAAATCTCGTGAGATTTAGTCTCAGAGACATATCAAAGGTATCACTTAACTTTAGTCATTTCCAAGCATTTCTGTATTCATTCGTACAAACAGCAATACTCAGCAATCcctctgaaatatttttttttataaattctcATATGTACAAATGACTGCGTCTTCGTCCCGATGTGCACATTATCCGTCCTAAATCCTATGTGATATCAGTAATTTAGGGTAGACGGGGTGGATGGTGTGCGCTTTGGGACGCAGGAAGCGATTGGGGGAAGCCTAGCCAGCGCGGAGAAAAGTAACGGGTACCACGTGAACCCGACATACAAAAACAGCTTCGGAATCGTTCTGTATAATAATTAACACTCGAAAAAGACATCGAAATACGTAAATAgcctttaaatataatatgcacAACTGAACAAGTAAgagtaagatttatttttcgAATTCATTAATTATGATAAAGCGCTACGTTCTGTCCCTTTTCTTATCCTCCCGTTTTGTTCTAGTTACTCAATTTCATtagtgaatatttaaaataatatatattcccAGCAGACCATAATCGAGGAAGACCGGGACCTACTGTGCGTCACCGCCAGCGCGCGTCCCCGCCTTTAGCTACGTACTGTCGCCCTCCCCGCTTAATAACGGACAGCTACTTCCTAGCTCCCAGTCAAATAGCCTCTATTTTACCGTGGTCTGAAGACTCGAGGCTCGCATAGCTATGCGCCGTACAATATAGCCGGCTATTGTTCAGCGCAGCTCTGCACGCGCCGGTGTTTACAGACTCTCGCGAGCGGCGCGCGGGATACCGACTCAGCCCTTTCGCTTTCGCCATGGCGAGCGGCGCGCTCCACAGATTCGTCCGCCTCTGTCGATACCTGCAGGACCCCTGCCATGTCGCCCGATTCCAGCAGTTCTGCGGCGTCCGCGGGACGTTTCCTAAGAAACAGACCGAGGCCGGCGAGACGCTCGGGGTCAACGGTGCTTGCGGGGGTCAGTGCGGAGACTCGGCGCGCGGACTTCCGGGCCAGAGGCTAAGAAAAAGTTTAAACGCTGATGAAAACGTTGAACGGGACGAGCGTTCCGCTAACGGACCCTCGGGGCGAGACGCGGAGAGGGACTCCAAAGGCACAGTGAAGCCTTTGCGGAGGAACTCGTTGACCGGTGATGTTGGCCAGGAGTTCATCATCGAGAACAGGTTTCTCTTTTACCTCTTCACCGTCGGAACCGAGCTCGGCAACGAGATGTTCTTCATCGTGTTCTTCCCCTTCTTGATGTGGAACGTCGACCCCTATGTGAGCCGCCAGCTGATCGTGGTGTGGGCCTGGGTGCTGTTTCTCGGACAGTCCACCAAAGACCTGGTTCGCTGGACCCGTCCCGCCTCTCCTCCTGTGGTCAAAGTAGAGGTTTTCTACAACACGGAGTACAGCATGCCCTCCACACACGCCATGTCCGGCACCGCGCTGCCCTTCTGTCTCTTCCTGCTCACGTGCAGCCGGTGGCAGTACCCATTCATGTTTGGACTGAGCATTGCTTTGTTTTGGAGTGTCCTCGTGTGCATCAGCAGGATTTATATGGGCATGCACTCTGTCCTGGAGGTGATCACGGGCTTCCTCTACAGTGTGCTCATCCTGGCGGTCCTTCACCCCATGCTGCATGACATCGACACGTTCTACCTGTCCCACAGCTTTGCCCCTCTGGTCGTCCTGCTTGTGCATGTAGGCTTCAGCCTGGTGGCCTTCTCGCTGGACTCATGGAGCACCTCCCGTGGCGACACGGCCCAGGCGTTGGCCACAGCTGCCGGAGCCGCTTTGGCTTGCCGTCTGAACTACCAGCTGGGTCTGCAGCCAGATCCCCCCGAAGAAGCTCTCCCTCTCACCTTGCCCCTGATCGACGGGGCCTTACTGACCCGCTCCATCATGCGGCTCCTGGTAGGAGTGGCTGTGCTTCTAGCTGTCAGGGCTGCTATGAAGGCGGTGGCGATCCCGCTGGCCTGCAGGATCTTCGGCGTGCCGTCGGATGACGTACGGAAGGCCAGGCAACACGCACACATTGAACTGGCGTACCGGTTTTTGGTCTACGGCACAGTGGCCTACTGCTGCGTTTTTCTGGTGCCACTTCTCTTTGGCTTCCTTGGCTTATCCTGAAGAAAATCCCTCCGTTTAACCTTGTTATTATCCTCGTTTTTATCCTAGCTTAACCTATACATGACCTGGACTAGTGAAGGTCCTCCGTTGTAGTCGAAACCAACAAACATTTGGTTGCAAATTTCACCAGCTTCATTTCCATGCTAATTTATTTCACTTGTTTTGTTCACAGATTTTACCGAACTGATGAATTTGAACAGGGTTTTTTTGGCacatttgttttgcatattcTTGAACGTGAGTGCGTGTCGCGTCATGACCTTCAGAGGACCTGTTCAAAGCTCCCGACTCTTGAACGTCAATGTTTATAGCCATTCTCAAAAAGCTTTCAAATGTTTCCTACATTTGTCTTCAGTAGATTTCCTTCAGCAGACTGACACCCACCCATCCAGGACCCTTGTGCTTTCTCTTGCTCAACAATACATTGGATTGTTTCTCGCTGTACCGATTTTGGCTCAGTCTGCTGTCCTTCACATaaattttttgcaaattaagtGAACATCCTTGTCTCCTTGTCATGGTTTTTCCTCAAGGGCTCGTTCTCATAACATTTTGTAATTCTCTGTTCTTCCTGAGGCTTGTTTTTCTTCTCGGTGGGTCCATTCCACTGCCGTGGCCCTAATGGTTCATTCAGTGTTTCAGGAAAGACTCTTAAACATGAGAGGCATAAAAAGTTGTtcttatctaaaaaaaaaactggttgaGTTCACTCCTCACAATAGTGGCAATGCATTAAGAGAATGAAGGGAGGGAACTTCCCGTCAGTATGAATGCTATATACAAGAACTTCCTGTGGATGTGTTAGTCTGAAACCCAAGCCTGGAAAAGGCCGCTCTGAACATGAATGCATCATATCTTTACCATTGTCTTTgtcaatgtattatttatatgcatcaTTATAGGAATAGTGAGTGAATAGCTCAGTATTCTGAGCAAAACAAGTGgatgtttgtaatatttctgttagtgtttctcattttcttcaagttctttttaaagggatatttcaccccaaaatctaaattaataatttacttacCTTCATGTTTCAAAAAGTGGAACTCATTAATTATactgtttaaacttttttttaaataatcttctCTTGTACCATTTGTAATTACATGTGggtgaatcttttttttgttgttttgaaggAACTATCACTTTTTGTAACAGTTGGCTAAATTGGGATGCTAAAATTCAGAGCTGTCGAGTGCTGCAGGTATTCTGCATGTATCCATTTGACATCCATGTTATCCCACACTGTAGTCTGGGGGAGATGCATTGAAATCTTTTCTCCAGGAACACACtaagtgtgattttatttaatagtctCAACTTGCTTGCTTTGTCCACTTGTCTGAGTTCACTGcagttttagctttttaaatatgattggGCATGATGACATGGCTGAAGTAAATCCGACATATATTTTCTGAGTGTCAGTATTAACCTAGGTAGTTGTTATGTTGTCTTTGAACTAGTACTCTATCCTTGCGgtatattttgttattgtgtTCAGTTTCACAAGCAAATGATGTAAACCCAGTCGTGAAAGAACATTCATTGCTCAGAAACCCTAGTGCCTTGCATCCTTATTTTTCAGGGCAACTTTATCCTCCAACTAGGCACAAGACACCACAGCTGTCTCTGTAAACAGTATTGATGGTGGAAATATTGTCATGCATCCATAATGTTCATTTTGCAGAACTAATAGTTGGTTATGTAATTGAAGGTTTttctgttcacttttttttctcacatttgaTGTGTATCtacagatttatttaatgtgCTGTATGTGGAATTATTACCGGGTTTctggtaacatttttttttgaaggtgaCATTTATCTGTGCACCAATATTAAATAAAGGAAACAGTTGTGAATATATTCAATTGTGGTCAGTTGTGCGATATAGTAAATGTACCATAACTGAATGatgagctgttttattttacagtgcactGAGCTGAAGTGGATATCATATCACAGACGGTTGGATGGTGTTTTAGGGTTTCCTGCGAGGAAATGCATTATGAATGAAGATTGTACACCTTACCTGTGCTGAACTTCGAGCCGTTCATGGTCATCTACTCACAAACGTACTGTATCTGTAGTACGGCTCCTAGTCTGCAATGTTCTTGacatttttctgttattattgtgaataaaaaaccAATATGAATTACCACTA

Function

NR:

description
PREDICTED: sphingosine-1-phosphate phosphatase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237579.1 True 5010 mRNA 0.44 3 16852999 16864423

Neighbor

gene id symbol gene type direction distance location
ppp2r5ea ppp2r5ea,LOC107701493,LOC107707079,LOC107563687,LOC107697307,LOC107743972,LOC108434994,LOC108257929,LOC103032801 coding downstream 1843 16840705 ~ 16851156 (-)
kcnh5a kcnh5a,LOC107743971,LOC107697309,LOC107563685,LOC107701494,LOC107707078,LOC108434995 coding downstream 31529 16748716 ~ 16821470 (-)
LOC122343211 ptk2bb,LOC107589060,LOC107697310,LOC107701495,LOC107563684,LOC107707077 coding downstream 128205 16710524 ~ 16724794 (-)
LOC122342599 LOC107749047 coding downstream 259905 16573127 ~ 16593094 (-)
LOC122342596 NA coding downstream 310097 16537980 ~ 16542902 (-)
snapc1a LOC107743976,LOC107697295,LOC107589064 coding upstream 82 16864505 ~ 16867985 (-)
hif1ab hif1a,LOC107589062,LOC107743977,LOC107563689 coding upstream 4038 16868461 ~ 16881395 (-)
six6b six6b,six6,LOC107589092,LOC107743981,LOC107697293,LOC107701490,LOC103035477,LOC108257662 coding upstream 91097 16955520 ~ 16958074 (-)
ppm1ab ppm1ab,LOC107718411,LOC107697300,LOC107701489,LOC107589071,LOC107560378,LOC107743982 coding upstream 122885 16987308 ~ 16993364 (-)
ckbb ckb,ckbb,LOC107560383,LOC107755234,LOC101477834 coding upstream 221039 17085462 ~ 17089500 (-)
G29021 NA non-coding downstream 151328 16701068 ~ 16701671 (-)
G29012 NA non-coding downstream 243000 16609636 ~ 16609999 (-)
LOC122342602 NA non-coding downstream 301995 16550333 ~ 16551004 (-)
LOC122342601 NA non-coding downstream 307378 16544954 ~ 16545621 (-)
G28970 NA non-coding downstream 388320 16464445 ~ 16464679 (-)
LOC122342882 NA non-coding upstream 43786 16908209 ~ 16924965 (-)
G29127 NA non-coding upstream 91032 16955455 ~ 17026339 (-)
G29143 NA non-coding upstream 174404 17038827 ~ 17040834 (-)
G29179 NA non-coding upstream 354728 17219151 ~ 17219453 (-)
G29212 NA non-coding upstream 484866 17349289 ~ 17349506 (-)
G29022 chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496 other downstream 144039 16707774 ~ 16708960 (-)
G28898 NA other downstream 920135 15932494 ~ 15932864 (-)
kiaa0930 zgc:172139,kiaa0930,LOC107601010,LOC107719873,LOC107687566,LOC107699202 other downstream 1241424 15601440 ~ 15611575 (-)
LOC122342864 rpl34,LOC107566275,LOC107573163,LOC107681344 other downstream 1825336 15024587 ~ 15027663 (-)
LOC122342642 pfkfb3 other downstream 2042288 14808543 ~ 14810711 (-)
prkchb prkchb,LOC107743988,LOC107697294,LOC107701491,LOC107718442,LOC107589067,LOC107563690 other upstream 21730 16886153 ~ 16900295 (-)
G29135 NA other upstream 142504 17006927 ~ 17017823 (-)
xrcc3 xrcc3,LOC107755221,LOC107683971,LOC107560377 other upstream 253920 17118343 ~ 17122129 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other upstream 772600 17637023 ~ 17638742 (-)
LOC122342228 scgn,LOC107693759,LOC107757885,LOC107669120,LOC107714763,LOC107747999,LOC107663245 other upstream 870183 17734606 ~ 17744543 (-)

Expression


Co-expression Network