snapc1a (LOC107743976,LOC107697295,LOC107589064)


Basic Information

Item Value
gene id snapc1a
gene name LOC107743976,LOC107697295,LOC107589064
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16864505 ~ 16867985 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237580.1
CTCTGATTGACGCGCTCGCGCACGCCGCACCTGCTAGTCAGAAGAGCGCGCGCGCAGGTGCGCGGGCAATTACCAAGCGAAGCGTGATAACAGCCGACTGAACAGAAAAGACCGAGGCCTTGAGATGATGTCGCGGAAGAAGGTGTGTGAAAAATACTGGGCTCCGTTCAAAAGCGACTGTGAGGAGCTCCTGGGCCGCTTCCAGCAGACCGAGTCGGTTCGGTATGAGGAGTTCTGCGCTATCTGGAGGGAGATGGACTTCTCGAGCGTGTTTTTTGGATGTCCTTCTATCCATGAGAAGAGATGCTTCACGCAGCTAGCGCTCACCGTAGCCTACAGATACGTTCTGCCCCCGTACAGTTTTCAGATTCGTGTGGGAGGCCTGTATGTGATCTATGGCCTTTACAATACACAGCTTATTTGGCCTAAGGAAAAGATCAGGGTTGCTCTGAAGGATTGGTATGATGTGCAGAAGCTCATCAACGATGCAAAAGGTTGCCAGCATTTGGATGTTGTTTACATCTTTAAAAGGCTTTTATCATCTAAAGCCTTTTGTTTCACCGCCATGCCCCAGAAGCTCACTTTTGAATCGAGTGAACGCTTTCAGTATAACGTGAATGAAGAGTTTCGGGACCGCAGGAACAGAGTGGCCGAACTCTCTTCCATCGAAATGCTGGAAGAGATCGCAAATGTGCATGGTCACTATGAGAGGCTAAAGAAATCATCAGTGCCGACGCTATCTGGAGTGACGCTGCTGAACCTGACGCATTCACTTCAGAAATGTGCTTCTGAGTACCAACAGTGGCAGGACAAAATAACAGCTGAAAAGGATAAAAACTCGAAAAAGGGAGCCACTCAGAAATCTGAGCAGTGCTTCAGTAGAGCTGACATGCTTGCCTCCATCAAGTCCAAGTCATACGGTCATGTGGTGAAGGCGACAAAATCTAGGCACCACAGACAGGTTGAGATGGTCACATCAGACTCTGGGACTGATCAAGTCCTCTTTGGTCAGAAAAAGAAACCCCCATCCCTCAGGACGAGAACCTGGCAAAACTTTGGCAAACCAAGTGAGCcagaaaaaatacagcaatggCTTCTAAGTGTGATGGAAAAAGACAAGACTGCCTtgAAACGTAGAGACATCAGAAGATTCAAGTGGTGACATGACTCTCTATCTCTGAGTTTTGTGTGTCAGTCGGCATTATGTATTCCACAgtgctttatttaataacataaacatttgaatgtgaAAGCATTGGTTATGTTTTGGTTtgggcaaaaataa
>XM_043237581.1
CTCTGATTGACGCGCTCGCGCACGCCGCACCTGCTAGTCAGAAGAGCGCGCGCGCAGGTGCGCGGGCAATTACCAAGCGAAGCGTGATAACAGCCGACTGAACAGAAAAGACCGAGGCCTTGAGATGATGTCGCGGAAGAAGGTGTGTGAAAAATACTGGGCTCCGTTCAAAAGCGACTGTGAGGAGCTCCTGGGCCGCTTCCAGCAGACCGAGTCGGTTCGGTATGAGGAGTTCTGCGCTATCTGGAGGGAGATGGACTTCTCGAGCGTGTTTTTTGGATGTCCTTCTATCCATGAGAAGAGATGCTTCACGCAGCTAGCGCTCACCGTAGCCTACAGATACGTTCTGCCCCCGTACAGTTTTCAGATTCGTGTGGGAGGCCTGTATGTGATCTATGGCCTTTACAATACACAGCTTATTTGGCCTAAGGAAAAGATCAGGGTTGCTCTGAAGGATTGGTATGATGTGCAGAAGCTCATCAACGATGCAAAAGGTTGCCAGCATTTGGATGTTGTTTACATCTTTAAAAGGCTTTTATCATCTAAAGCCTTTTGTTTCACCGCCATGCCCCAGAAGCTCACTTTTGAATCGAGTGAACGCTTTCAGTATAACGTGAATGAAGAGTTTCGGGACCGCAGGAACAGAGTGGCCGAACTCTCTTCCATCGAAATGCTGGAAGAGATCGCAAATGTGCATGGTCACTATGAGAGGCTAAAGAAATCATCAGTGCCGACGCTATCTGGAGTGACGCTGCTGAACCTGACGCATTCACTTCAGAAATGTGCTTCTGAGTACCAACAGTGGCAGGACAAAATAACAGCTGAAAAGGATAAAAACTCGAAAAAGGGAGCCACTCAGAAATCTGAGTGCTTCAGTAGAGCTGACATGCTTGCCTCCATCAAGTCCAAGTCATACGGTCATGTGGTGAAGGCGACAAAATCTAGGCACCACAGACAGGTTGAGATGGTCACATCAGACTCTGGGACTGATCAAGTCCTCTTTGGTCAGAAAAAGAAACCCCCATCCCTCAGGACGAGAACCTGGCAAAACTTTGGCAAACCAAGTGAGCcagaaaaaatacagcaatggCTTCTAAGTGTGATGGAAAAAGACAAGACTGCCTtgAAACGTAGAGACATCAGAAGATTCAAGTGGTGACATGACTCTCTATCTCTGAGTTTTGTGTGTCAGTCGGCATTATGTATTCCACAgtgctttatttaataacataaacatttgaatgtgaAAGCATTGGTTATGTTTTGGTTtgggcaaaaataa

Function

NR:

description
PREDICTED: snRNA-activating protein complex subunit 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237580.1 True 1285 mRNA 0.47 11 16864505 16867985
XM_043237581.1 False 1282 mRNA 0.47 11 16864505 16867985

Neighbor

gene id symbol gene type direction distance location
sgpp1a si:ch211-212g7.6,LOC107697306,LOC107589063,LOC107743975,LOC107716492,LOC107701492,LOC107563688 coding downstream 82 16852999 ~ 16864423 (-)
ppp2r5ea ppp2r5ea,LOC107701493,LOC107707079,LOC107563687,LOC107697307,LOC107743972,LOC108434994,LOC108257929,LOC103032801 coding downstream 13349 16840705 ~ 16851156 (-)
kcnh5a kcnh5a,LOC107743971,LOC107697309,LOC107563685,LOC107701494,LOC107707078,LOC108434995 coding downstream 43035 16748716 ~ 16821470 (-)
LOC122343211 ptk2bb,LOC107589060,LOC107697310,LOC107701495,LOC107563684,LOC107707077 coding downstream 139711 16710524 ~ 16724794 (-)
LOC122342599 LOC107749047 coding downstream 271411 16573127 ~ 16593094 (-)
hif1ab hif1a,LOC107589062,LOC107743977,LOC107563689 coding upstream 476 16868461 ~ 16881395 (-)
six6b six6b,six6,LOC107589092,LOC107743981,LOC107697293,LOC107701490,LOC103035477,LOC108257662 coding upstream 87535 16955520 ~ 16958074 (-)
ppm1ab ppm1ab,LOC107718411,LOC107697300,LOC107701489,LOC107589071,LOC107560378,LOC107743982 coding upstream 119323 16987308 ~ 16993364 (-)
ckbb ckb,ckbb,LOC107560383,LOC107755234,LOC101477834 coding upstream 217477 17085462 ~ 17089500 (-)
LOC122342663 NA coding upstream 255922 17123907 ~ 17130265 (-)
G29021 NA non-coding downstream 162834 16701068 ~ 16701671 (-)
G29012 NA non-coding downstream 254506 16609636 ~ 16609999 (-)
LOC122342602 NA non-coding downstream 313501 16550333 ~ 16551004 (-)
LOC122342601 NA non-coding downstream 318884 16544954 ~ 16545621 (-)
G28970 NA non-coding downstream 399826 16464445 ~ 16464679 (-)
LOC122342882 NA non-coding upstream 40224 16908209 ~ 16924965 (-)
G29127 NA non-coding upstream 87470 16955455 ~ 17026339 (-)
G29143 NA non-coding upstream 170842 17038827 ~ 17040834 (-)
G29179 NA non-coding upstream 351166 17219151 ~ 17219453 (-)
G29212 NA non-coding upstream 481304 17349289 ~ 17349506 (-)
G29022 chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496 other downstream 155545 16707774 ~ 16708960 (-)
G28898 NA other downstream 931641 15932494 ~ 15932864 (-)
kiaa0930 zgc:172139,kiaa0930,LOC107601010,LOC107719873,LOC107687566,LOC107699202 other downstream 1252930 15601440 ~ 15611575 (-)
LOC122342864 rpl34,LOC107566275,LOC107573163,LOC107681344 other downstream 1836842 15024587 ~ 15027663 (-)
LOC122342642 pfkfb3 other downstream 2053794 14808543 ~ 14810711 (-)
prkchb prkchb,LOC107743988,LOC107697294,LOC107701491,LOC107718442,LOC107589067,LOC107563690 other upstream 18168 16886153 ~ 16900295 (-)
G29135 NA other upstream 138942 17006927 ~ 17017823 (-)
xrcc3 xrcc3,LOC107755221,LOC107683971,LOC107560377 other upstream 250358 17118343 ~ 17122129 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other upstream 769038 17637023 ~ 17638742 (-)
LOC122342228 scgn,LOC107693759,LOC107757885,LOC107669120,LOC107714763,LOC107747999,LOC107663245 other upstream 866621 17734606 ~ 17744543 (-)

Expression


Co-expression Network