dcn (LOC107744892,LOC107690767,LOC107585689,LOC107659851,LOC107565639,LOC107725622)


Basic Information

Item Value
gene id dcn
gene name LOC107744892,LOC107690767,LOC107585689,LOC107659851,LOC107565639,LOC107725622
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8289255 ~ 8304456 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237587.1
TTCTCCAATTGTCTCATTTGAAAAGGACGTAGAAATCAACCCCTCCCTCGCTCCTTTtcttccctccctccctctctctctccttctctgtcCTTCTCTCCATCCCCTCCCCCCGTGACAGAGCACACCTGCCTGATCTTGGCTGCAGGCGTCCACACAGCGATCAGCCCTCGGCCTGCCGCGCTGCACATTGGCTCCAGCCCTCTCTGGATTTGCGGATCTTCGTCTGCAGCTCTACAAGCTCCTGTACGTGCAGGCCTCCATCAGCAACATGAAATCGGCCTGTCTCTCCCTGCTTTTGGTGTCAGTATGCTGGGCTCTGCCCTTCCGTCAGTCCGGCTTCATGGACTTCATGATGGAGGACGAGCCGGGCTCAGGCTCTCCCATGCCTCCAGTTCGCAAACCACCTGTTCAGACTCCTCCTCCAGTGCTACCTGAGGGACCTGATGGACTTTTCTGCCCCTTCCGGTGCCAGTGCCATCTGCGAGTGGCCCAGTGTTCTGATCTAGGTTTGAAGAACGTTCCAGAAAAAATTCCAGTTGATACCACTCTCCTGGATTTGCAGAACAACAAGATCTCAGAGATCAGAGAAAACGACTTGAAAGGCCTGAAGGGTCTCCAAacactcATCCTGGTCAACAATAAGATCACCATCATTCATGCCAAGGCCTTTTCTTCTCTGATCAATTTGGAGAGACTCTACCTGTCCAAGAACCTCCTGAAGGATGTTCCTGCTAACATACCGAAAAGCCTGCAGGAGCTGCGCATTCACGAGAACCAGATTAACAAGATCAAGAAGTCCTCCTTTGCCGGCATGGCCAATGTCATCGTCATGGAGCTGGGCTCTAACCCTCTGAGTAGCTCTGGGGTTGATAATGGTGCCTTTGCTGATCTGAAGAGGGTTTCTTACATCCGAATTGCTGACACTAACATCACCTCCATCCCCAAAGGTCTGCCCAGCTCTCTTTTTGAACTTCACTTGGATGGAAACAAGATCACCAAAGTGACCGCAGACAGTCTGAAGGGCCTCAAGAACCTGTCCAAGCTGGGTCTGAGCCACAATGAGATCAGCATGGTGGAGAACGGCTCTCTGTCCAACGTGCCTCACCTGAGGGAACTTCACCTGGACAATAACATGCTGACTTCAGTCCCGTCCGGCCTGCCAGAACACAAATACATTCAGGTGATTTACCTTCATGCCAACAAGATTGCTGCTGTGGGAACAGAGGACTTCTGCCCACCCGGCTATAATACAAAGAAGGCCATGTACTCAGGCATCAGCCTGTTCAGTAATCCAGTGCCCTATTGGGAGGTCCAGCCCATCACCTTCCGCTGCGTCTTCGACCGTTCGGCCATTCAACTGGGCAACTacagaaagaaataaagccTCCAATCAGACGGCTTAGTCACTGTTTTCATCCCGCCCCTTCCTGTCTGACCTAATCCTTTCAAGCACATAACTTAGTCTGAATGTCATATCCCAGTTAACCCCAAATAAACTCCAATTGCATTTTCAACGTGCAGATTACCGGACAGATATTcgaataaacaaatgcatatcAGTATTGTATTGAACGTACATGTTGTGTAAGTGCAGAGGAGAACAGAAATtgtatgattttgaaaaaaagaatagaaaaataaagaaagtaaaGCCACGGCCACTTAGAATATCCAATAGCGCACATCACCCAGATAATGAAATGATCTTTTTCGAAGGTCACTCTGGATCTTCTGGACCTAAGCCATGTTCTTTCATGTTCTTCGCTGGCCTGCGGAGCGGGCAGCAAGGGGTTAACACACGTCAGCCAGTGCCATTAACAAGAGCTTGTATGCTAGAATGTATTCAGTTATTACTTTCCATTGTAGCGCTAGTTCAGATTGTGCTAGTCATGTTGTTTCTCTCGCGATCAATTGAAGAGGGAGAAAACAGGAAGTCAAGGCTGCTCGAGATTCTCTTCGTCTCATTTGGGATGCTTGGGTGGCATTTGTGTTCATTAGTTCCCTCAGATCCCGTCTGCTCTCTGCCCAGGTGAACATAGCGCTTCGAGATGTAGAATAAACTTTGTTGCCATTACGATGAAAGCGATCCCCGAACCTATACGCATGCTTTTTCTACTCTGGTGAGCACCGTGTTTATGTGCAAGCTTGTacatgtgtttctttctttttattttcgtGTTTGTTGATCGTCTGTGTTTCAGTCTGGAAGGATCGGGAGGGAGACGGCGGATATGGACACCTCCTGCTTTCATGAGAGTCATGAATGTCTCTTGTATAGACGCTGTATATAAATGCTGTATAAAGAATCCTATCAATGCTTTGAAGCACAAGCACTTACAGTAGTTTGGACTTTAATATATCGGCAATAAAGATAATCCctttcatctctctttctctctctctcttttctctctctctctctctctctctctggtcaaTTGAGGCTTCGACACAGGTGTCTTGAACCAAATAAACAGTCAAATCTCTCA
>XM_043237588.1
TTCTTCTCCAATTGTCTCATTTGAAAAGGACGTAGAAATCAACCCCTCCCTCGCTCCTTTtcttccctccctccctctctctctccttctctgtcCTTCTCTCCATCCCCTCCCCCCGTGACAGAGCACACCTGCCTGATCTTGGCTGCAGGCGTCCACACAGCGATCAGCCCTCGGCCTGCCGCGCTGCACATTGGCTCCAGCCCTCTCTGGATTTGCGGATCTTCGTCTGCAGCTCTACAAGCTCCTGCCTCCATCAGCAACATGAAATCGGCCTGTCTCTCCCTGCTTTTGGTGTCAGTATGCTGGGCTCTGCCCTTCCGTCAGTCCGGCTTCATGGACTTCATGATGGAGGACGAGCCGGGCTCAGGCTCTCCCATGCCTCCAGTTCGCAAACCACCTGTTCAGACTCCTCCTCCAGTGCTACCTGAGGGACCTGATGGACTTTTCTGCCCCTTCCGGTGCCAGTGCCATCTGCGAGTGGCCCAGTGTTCTGATCTAGGTTTGAAGAACGTTCCAGAAAAAATTCCAGTTGATACCACTCTCCTGGATTTGCAGAACAACAAGATCTCAGAGATCAGAGAAAACGACTTGAAAGGCCTGAAGGGTCTCCAAacactcATCCTGGTCAACAATAAGATCACCATCATTCATGCCAAGGCCTTTTCTTCTCTGATCAATTTGGAGAGACTCTACCTGTCCAAGAACCTCCTGAAGGATGTTCCTGCTAACATACCGAAAAGCCTGCAGGAGCTGCGCATTCACGAGAACCAGATTAACAAGATCAAGAAGTCCTCCTTTGCCGGCATGGCCAATGTCATCGTCATGGAGCTGGGCTCTAACCCTCTGAGTAGCTCTGGGGTTGATAATGGTGCCTTTGCTGATCTGAAGAGGGTTTCTTACATCCGAATTGCTGACACTAACATCACCTCCATCCCCAAAGGTCTGCCCAGCTCTCTTTTTGAACTTCACTTGGATGGAAACAAGATCACCAAAGTGACCGCAGACAGTCTGAAGGGCCTCAAGAACCTGTCCAAGCTGGGTCTGAGCCACAATGAGATCAGCATGGTGGAGAACGGCTCTCTGTCCAACGTGCCTCACCTGAGGGAACTTCACCTGGACAATAACATGCTGACTTCAGTCCCGTCCGGCCTGCCAGAACACAAATACATTCAGGTGATTTACCTTCATGCCAACAAGATTGCTGCTGTGGGAACAGAGGACTTCTGCCCACCCGGCTATAATACAAAGAAGGCCATGTACTCAGGCATCAGCCTGTTCAGTAATCCAGTGCCCTATTGGGAGGTCCAGCCCATCACCTTCCGCTGCGTCTTCGACCGTTCGGCCATTCAACTGGGCAACTacagaaagaaataaagccTCCAATCAGACGGCTTAGTCACTGTTTTCATCCCGCCCCTTCCTGTCTGACCTAATCCTTTCAAGCACATAACTTAGTCTGAATGTCATATCCCAGTTAACCCCAAATAAACTCCAATTGCATTTTCAACGTGCAGATTACCGGACAGATATTcgaataaacaaatgcatatcAGTATTGTATTGAACGTACATGTTGTGTAAGTGCAGAGGAGAACAGAAATtgtatgattttgaaaaaaagaatagaaaaataaagaaagtaaaGCCACGGCCACTTAGAATATCCAATAGCGCACATCACCCAGATAATGAAATGATCTTTTTCGAAGGTCACTCTGGATCTTCTGGACCTAAGCCATGTTCTTTCATGTTCTTCGCTGGCCTGCGGAGCGGGCAGCAAGGGGTTAACACACGTCAGCCAGTGCCATTAACAAGAGCTTGTATGCTAGAATGTATTCAGTTATTACTTTCCATTGTAGCGCTAGTTCAGATTGTGCTAGTCATGTTGTTTCTCTCGCGATCAATTGAAGAGGGAGAAAACAGGAAGTCAAGGCTGCTCGAGATTCTCTTCGTCTCATTTGGGATGCTTGGGTGGCATTTGTGTTCATTAGTTCCCTCAGATCCCGTCTGCTCTCTGCCCAGGTGAACATAGCGCTTCGAGATGTAGAATAAACTTTGTTGCCATTACGATGAAAGCGATCCCCGAACCTATACGCATGCTTTTTCTACTCTGGTGAGCACCGTGTTTATGTGCAAGCTTGTacatgtgtttctttctttttattttcgtGTTTGTTGATCGTCTGTGTTTCAGTCTGGAAGGATCGGGAGGGAGACGGCGGATATGGACACCTCCTGCTTTCATGAGAGTCATGAATGTCTCTTGTATAGACGCTGTATATAAATGCTGTATAAAGAATCCTATCAATGCTTTGAAGCACAAGCACTTACAGTAGTTTGGACTTTAATATATCGGCAATAAAGATAATCCctttcatctctctttctctctctctcttttctctctctctctctctctctctctggtcaaTTGAGGCTTCGACACAGGTGTCTTGAACCAAATAAACAGTCAAATCTCTCA

Function

NR:

description
PREDICTED: decorin-like

GO:

id name namespace
GO:0050654 chondroitin sulfate proteoglycan metabolic process biological_process
GO:0051216 cartilage development biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0005515 protein binding molecular_function
GO:0005518 collagen binding molecular_function

KEGG:

id description
K04660 DCN; decorin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237587.1 True 2492 mRNA 0.48 8 8289255 8304453
XM_043237588.1 False 2485 mRNA 0.48 8 8289255 8304456

Neighbor

gene id symbol gene type direction distance location
lum lum,LOC107659852,LOC107565637,LOC107725655,LOC107744894,LOC107690761,LOC107585613 coding downstream 7353 8278560 ~ 8281902 (-)
kera LOC107725681,LOC107744893,LOC107690746,LOC107596099 coding downstream 14725 8267724 ~ 8274530 (-)
epyc epyc,LOC107744933,LOC107690887,LOC107592694,LOC107659828,LOC107725680,LOC107565627 coding downstream 23066 8255550 ~ 8266189 (-)
atp2b1a atp2b1a,atp2b1,LOC107676914,LOC107690705,LOC107585291,LOC107725550,LOC107744884 coding downstream 130886 8131796 ~ 8158369 (-)
mest LOC107676916,LOC107725549,LOC107690703,LOC107744881 coding downstream 172803 8112969 ~ 8116452 (-)
LOC122342541 LOC107725512,LOC107565629,LOC107690781,LOC107744891,LOC107585840 coding upstream 16998 8321454 ~ 8325846 (-)
btg1 btg1,LOC107585922,LOC107725570,LOC107659850,LOC107744895,LOC107690792,LOC107565641 coding upstream 63080 8367536 ~ 8374512 (-)
caprin2 LOC107725657,LOC107744896,LOC107694696 coding upstream 101369 8405825 ~ 8414329 (-)
sinhcaf fam60a,LOC107694695,LOC107586002,LOC107725569,LOC107744898,LOC107659848,LOC103028480 coding upstream 110837 8415293 ~ 8422905 (-)
dennd5b dennd5b,LOC107659847,LOC107725568,LOC107744899,LOC107694693 coding upstream 119639 8424095 ~ 8459002 (-)
LOC122342531 NA non-coding downstream 42746 8200177 ~ 8246509 (-)
LOC122342218 NA non-coding downstream 119668 8168273 ~ 8169587 (-)
G27063 NA non-coding downstream 162431 8126342 ~ 8126824 (-)
G27050 NA non-coding downstream 165395 8123114 ~ 8123860 (-)
G27051 NA non-coding downstream 167547 8121346 ~ 8121708 (-)
G27240 NA non-coding upstream 171708 8476164 ~ 8478311 (-)
G27249 LOC107725541,LOC107659837,LOC107590048 non-coding upstream 229375 8533831 ~ 8536676 (-)
LOC122343385 NA non-coding upstream 457643 8762099 ~ 8774171 (-)
G27263 NA non-coding upstream 499699 8804155 ~ 8805230 (-)
G27257 NA non-coding upstream 500788 8805244 ~ 8809184 (-)
LOC122343432 NA other downstream 39328 8247911 ~ 8249927 (-)
G26951 NA other downstream 730802 7555115 ~ 7558453 (-)
si:dkey-261e22.4 NA other downstream 1068344 7214334 ~ 7220911 (-)
il22 NA other downstream 1548514 6737641 ~ 6740741 (-)
msrb3 msrb3,LOC107725596,LOC107587134,LOC107757268,LOC107561995 other downstream 1927771 6350491 ~ 6361484 (-)
G27232 LOC107589947,LOC107725677,LOC107659846,LOC107586091,LOC107694692 other upstream 156050 8460506 ~ 8468028 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other upstream 209174 8513630 ~ 8517583 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other upstream 565759 8870215 ~ 8874598 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other upstream 587563 8892019 ~ 8941403 (-)
klhl42 klhl42 other upstream 699804 9004260 ~ 9009304 (-)

Expression


Co-expression Network