nmu (nmu,LOC107684000,LOC107755222,LOC107568121,LOC107701461,LOC107718432)


Basic Information

Item Value
gene id nmu
gene name nmu,LOC107684000,LOC107755222,LOC107568121,LOC107701461,LOC107718432
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17565453 ~ 17578804 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237590.1
GGATTTCGCAGGGAACGGCTCCTGGGCGCTTTGGCCCCCCAGATGCATGATGACGGGGCCTCCATACGGACACGGGGTGATGCTTCAGTAAGGCACTTCAAGTAACTCCAGCTCCCTTTCAAAGCTCTCACCCCGGTCGATTTACGAAGAGGGTGTGTGACTCTGAGAGTTCATAATGCTGTGCTGTAAGTCAGAGTGAGAAAGCAGAGCGGCAGACGCACGAGAGTATGAGGAGCAGCAGTCAGTGTGAACACGGAGCAGCTCAGAGTCAGAGCGCCATGAGCCCAGCACACAACTCAGCCCTGATGCTCGCTGTCCTCTTCATCTCCTTCATACCCATCACCACAGGTGTTCCAGTGCTCTTGAATCCATCTTCAATAGAGCACGAGCAGTTACTAACCCAGATAACTGATCTGTGCTCGTTCTACCTCTCTGCAGACCCATCCTTTAGAACATCTGATGTCCTGGAGGACCTGTGTTTCCTAATGCTGGGATCGCTGCAAAAATCGGAGGAGATCACAGCTCGAGAGACCAGCAAAAGGGATGAGCTTCAGGGGCCCGGACGGATCCAGAGCAGAGGATATTTCCTTTATAGGccacGAAATGGAAGAAGATCTGACGAATATGTGTAAAACAAAGAATCTTAAAATCAGACTAGCGTACCTGCTAACGTCTGACCAATGTTTTCAGCGGCGCCAGACCCCGTGATCCAGAGCCGGTCAACCTTAACACGTCACGTCACTCGTTCCAGAAAACACCCCTCTATTGAATTGTGATGTTGAATGTACGATCAGAATCCAAATAAAGTATTCCAACGTTCCAACGTTCCTGTTCGTGTAACTGTGCCGTGTCTTTTGaattaaaagcattataaaata
>XM_043237591.1
GGATTTCGCAGGGAACGGCTCCTGGGCGCTTTGGCCCCCCAGATGCATGATGACGGGGCCTCCATACGGACACGGGGTGATGCTTCAGTAAGGCACTTCAAGTAACTCCAGCTCCCTTTCAAAGCTCTCACCCCGGTCGATTTACGAAGAGGGTGTGTGACTCTGAGAGTTCATAATGCTGTGCTGTAAGTCAGAGTGAGAAAGCAGAGCGGCAGACGCACGAGAGTATGAGGAGCAGCAGTCAGTGTGAACACGGAGCAGCTCAGAGTCAGAGCGCCATGAGCCCAGCACACAACTCAGCCCTGATGCTCGCTGTCCTCTTCATCTCCTTCATACCCATCACCACAGGTGTTCCAGTGCTCTTGAATCCATCTTCAATAGAGCACGAGCAGTTACTAACCCAGATAACTGATCTGTGCTCGTTCTACCTCTCTGCAGACCCATCCTTTAGAACATCTGATGTCCTGGAGGACCTGTGTTTCCTAATGCTGGGATCGCTGCAAAAATCGGAGGAGATCACAGCTCGAGAGACCAGCAAAAGGtttttatttcattacactAAACCGAATGGTGCAGGATTGTCAGATGGGACGTCTACTGTGTTGCACCCTCTTCTGGAGCTCATACCCCAGCTTGCCAGAAGAAGAAGCAggagaatgaaattaaatGATGAGCTTCAGGGGCCCGGACGGATCCAGAGCAGAGGATATTTCCTTTATAGGccacGAAATGGAAGAAGATCTGACGAATATGTGTAAAACAAAGAATCTTAAAATCAGCGGCGCCAGACCCCGTGATCCAGAGCCGGTCAACCTTAACACGTCACGTCACTCGTTCCAGAAAACACCCCTCTATTGAATTGTGATGTTGAATGTACGATCAGAATCCAAATAAAGTATTCCAACGTTCCAACGTTCCTGTTCGTGTAACTGTGCCGTGTCTTTTGaattaaaagcattataaaata
>XM_043237592.1
GGATTTCGCAGGGAACGGCTCCTGGGCGCTTTGGCCCCCCAGATGCATGATGACGGGGCCTCCATACGGACACGGGGTGATGCTTCAGTAAGGCACTTCAAGTAACTCCAGCTCCCTTTCAAAGCTCTCACCCCGGTCGATTTACGAAGAGGGTGTGTGACTCTGAGAGTTCATAATGCTGTGCTGTAAGTCAGAGTGAGAAAGCAGAGCGGCAGACGCACGAGAGTATGAGGAGCAGCAGTCAGTGTGAACACGGAGCAGCTCAGAGTCAGAGCGCCATGAGCCCAGCACACAACTCAGCCCTGATGCTCGCTGTCCTCTTCATCTCCTTCATACCCATCACCACAGGTGTTCCAGTGCTCTTGAATCCATCTTCAATAGAGCACGAGCAGTTACTAACCCAGATAACTGATCTGTGCTCGTTCTACCTCTCTGCAGACCCATCCTTTAGAACATCTGATGTCCTGGAGGACCTGTGTTTCCTAATGCTGGGATCGCTGCAAAAATCGGAGGAGATCACAGCTCGAGAGACCAGCAAAAGGtttttatttcattacactAAACCGAATGGTGCAGGATTGTCAGATGGGACGTCTACTGTGTTGCACCCTCTTCTGGAGCTCATACCCCAGCTTGCCAGAAGAAGAAGCAggagaatgaaattaaatGATGAGCTTCAGGGGCCCGGACGGATCCAGAGCAGAGGATATTTCCTTTATAGGccacGAAATGGAAGAAGATCTGACGAATATGTGTAAAACAAAGAATCTTAAAATCAGACTAGCGTACCTGCTAACGTCTGACCAATGTTTTCAGCGGCGCCAGACCCCGTGATCCAGAGCCGGTCAACCTTAACACGTCACGTCACTCGTTCCAGAAAACACCCCTCTATTGAATTGTGATGTTGAATGTACGATCAGAATCCAAATAAAGTATTCCAACGTTCCAACGTTCCTGTTCGTGTAACTGTGCCGTGTCTTTTGaattaaaagcattataaaata
>XM_043237593.1
GGATTTCGCAGGGAACGGCTCCTGGGCGCTTTGGCCCCCCAGATGCATGATGACGGGGCCTCCATACGGACACGGGGTGATGCTTCAGTAAGGCACTTCAAGTAACTCCAGCTCCCTTTCAAAGCTCTCACCCCGGTCGATTTACGAAGAGGGTGTGTGACTCTGAGAGTTCATAATGCTGTGCTGTAAGTCAGAGTGAGAAAGCAGAGCGGCAGACGCACGAGAGTATGAGGAGCAGCAGTCAGTGTGAACACGGAGCAGCTCAGAGTCAGAGCGCCATGAGCCCAGCACACAACTCAGCCCTGATGCTCGCTGTCCTCTTCATCTCCTTCATACCCATCACCACAGGTGTTCCAGTGCTCTTGAATCCATCTTCAATAGAGCACGAGCAGTTACTAACCCAGATAACTGATCTGTGCTCGTTCTACCTCTCTGCAGACCCATCCTTTAGAACATCTGATGTCCTGGAGGACCTGTGTTTCCTAATGCTGGGATCGCTGCAAAAATCGGAGGAGATCACAGCTCGAGAGACCAGCAAAAGGGATGAGCTTCAGGGGCCCGGACGGATCCAGAGCAGAGGATATTTCCTTTATAGGccacGAAATGGAAGAAGATCTGACGAATATGTGTAAAACAAAGAATCTTAAAATCAGCGGCGCCAGACCCCGTGATCCAGAGCCGGTCAACCTTAACACGTCACGTCACTCGTTCCAGAAAACACCCCTCTATTGAATTGTGATGTTGAATGTACGATCAGAATCCAAATAAAGTATTCCAACGTTCCAACGTTCCTGTTCGTGTAACTGTGCCGTGTCTTTTGaattaaaagcattataaaata

Function

symbol description
nmu Predicted to enable neuromedin U receptor binding activity. Acts upstream of or within circadian behavior. Is expressed in brainstem; hypothalamus; and spinal cord. Human ortholog(s) of this gene implicated in obesity. Orthologous to human NMU (neuromedin U).

NR:

description
neuromedin-U isoform X2

GO:

id name namespace
GO:0006940 regulation of smooth muscle contraction biological_process

KEGG:

id description
K05249 NMU; neuromedin U

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237590.1 False 878 mRNA 0.50 9 17565453 17578804
XM_043237591.1 False 967 mRNA 0.49 11 17565453 17578804
XM_043237592.1 True 1004 mRNA 0.49 11 17565453 17578804
XM_043237593.1 False 841 mRNA 0.50 9 17565453 17578804

Neighbor

gene id symbol gene type direction distance location
LOC122342653 l3hypdh,LOC107684001 coding upstream 75158 17483433 ~ 17490295 (+)
esr2a esr2,LOC107718402,LOC107701482,LOC107755240,LOC107683963 coding upstream 154601 17397135 ~ 17410852 (+)
jag2b jag2,jag2b,LOC107718403,LOC107755239,LOC107601898 coding upstream 216583 17308293 ~ 17348870 (+)
nudt14 nudt14,LOC107755236,LOC107718404,LOC107701483,LOC107683965 coding upstream 271817 17266457 ~ 17293636 (+)
brf1b brf1b,LOC107718407,LOC107683968,LOC107701485,LOC107755207,LOC107560373 coding upstream 388956 17122433 ~ 17176497 (+)
clocka clock,clocka,LOC107701480 coding downstream 3266 17582070 ~ 17630822 (+)
kdr kdr,LOC107755244,LOC107665394,LOC107683984,LOC107718422 coding downstream 65631 17644435 ~ 17665897 (+)
LOC122343009 zgc:65851,LOC107670379,LOC107668750,LOC107599600,LOC107708255,LOC107755851,LOC107573085 coding downstream 227036 17805840 ~ 17811463 (+)
oxt oxt,LOC107729605,LOC107745630,LOC107597959,LOC107674922,LOC107566857,LOC107670390 coding downstream 322637 17901441 ~ 17902917 (+)
fabp1a fabp1,fabp1a,LOC107745323,LOC107597935 coding downstream 333635 17912439 ~ 17915594 (+)
G29272 NA non-coding upstream 11263 17553833 ~ 17554190 (+)
G29200 NA non-coding upstream 179773 17385289 ~ 17385680 (+)
G29192 NA non-coding upstream 270813 17294375 ~ 17294640 (+)
G29181 NA non-coding upstream 344837 17220257 ~ 17220616 (+)
G29178 NA non-coding upstream 345939 17219142 ~ 17219514 (+)
LOC122342426 NA non-coding downstream 88346 17667150 ~ 17669761 (+)
LOC122343158 NA non-coding downstream 131251 17710055 ~ 17711711 (+)
G29305 NA non-coding downstream 159263 17738067 ~ 17739667 (+)
G29306 NA non-coding downstream 166724 17745528 ~ 17746317 (+)
G29317 NA non-coding downstream 238742 17817546 ~ 17817933 (+)
atp5mj NA other upstream 524623 17038419 ~ 17040830 (+)
G28982 NA other upstream 1091072 16473898 ~ 16474381 (+)
G28899 NA other upstream 1579727 15985219 ~ 15985726 (+)
G28891 NA other upstream 1723598 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 1910175 15565499 ~ 15655278 (+)
G29526 NA other downstream 721611 18300415 ~ 18301189 (+)
G29545 NA other downstream 857656 18436460 ~ 18461317 (+)
G29642 NA other downstream 1304375 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 1711416 19290220 ~ 19342911 (+)
G29835 NA other downstream 2152458 19731262 ~ 19786128 (+)

Expression


Co-expression Network