spi2 (LOC107590970,LOC107695852,LOC107725518,LOC108233215)


Basic Information

Item Value
gene id spi2
gene name LOC107590970,LOC107695852,LOC107725518,LOC108233215
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9086544 ~ 9088361 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237596.1
TCATTACAAATgagtaaatgcaaatgtatttaaacacacGGCGTACAAGTTACATTATAATTAGTATGCTtcagctgaataaaaatgcttgtCAGTTCACTTTGCATTTCAAAGAGATAACTTAAGAAATATCGGTGCACTTAAGAGGGTCAAATCAAGTGGGTTTAACAATTATTGAAATGATagcacaatttaatttaaatgcaaaatgcaattaaGTGTGTGAGCTGAAAGTAACATTTACTTTCAGCTCACACCTAAGCATATTCCTTTTAagactattattaataatcagttctcttttttaaaaaaatatgcaaattctgTGCATGCCTTTTTCTAATAAATAGTGTCCGAAAAAAAAgctattgatttaaaaatacactgacaTTATGAGCCCGAGTATCCTCACTAGCTGGTTTTGTAACGCACTGGCAGCAAGGGATCTCTCCGCCGTGTCAACCACTGAAGATATGGACATATCTAGAGAGAAGCTACCTGCCGGGGAACATTTTAACGATGcgttagaaaaagaaaagtccCGGCTGCATCTTCCCGCACCTTCACCTCGGCAGGCCGTGGGATCTCCGGCCAAGGCAAACGGACCTGGCCTGTACACAGACTGTGGAATGAAATGCAACAATAACGCCGTCGATCAGTCAGAGGTCCTTTACAGCGCACCCGACGGGCAAGAGTTAAACGCCTTAAACGGACCAGAGAGACCTTTAACTCTGAACGCAGCACCTGAAAAGTGTGCCGAATCATTGCCCAGCATTACACCTGCAGAGAAAGGGAAAAAGCTACGTCTTTTCCACTTCCTGTTCGAGATGCTGGAGGACCCCGGCATGGCCCAGTGTGTGTCCTGGGTGCCCGCTTCGGCGGGCGTCTTCCGCTTTTCTGCCAGACACAAGGAGCGCGTGGCCGAGCTCTGGGGCCAGAGGAAGGGCAACAGGATGCCCATGACCTACCAGAAAATGTCCCGCGCACTGCGAAATTACGCCCGCTCGGGGGAGATcattaaagtgaaaaagaaacTGACTTATCAGTTTAGCTTAGCAACCCTCTCTACTTTACAGAGGCAGCGCGGCGTAACCAAAGCAGCATGCGGGTCAAAATAGGGACTGGACGATTGTCTCAAGTTTGTTACCGTCATTATTTCTCATGATATCTCAATTGCTTTGGTAACAAGAGGAGGGTAAAATTAGTTTCTATTTGTAAGACTGTGGTGTTTTGCATTGCATGGGTTTGTGCTGTTCTTTACATATCttgatgtatttaaaacaaaaaaaagtgtgtcttaaaaaacaaaacaaacattttataaataaataaaatattcatatatacagtatatatatatagtgaaccTATTCActtttttactgtttctttctcacttttttAAGCTGCCGTTTTAAAGtggcaaaacaaa

Function

NR:

description
PREDICTED: transcription factor Spi-C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237596.1 True 1432 mRNA 0.42 3 9086544 9088361

Neighbor

gene id symbol gene type direction distance location
mybpc1 mybpc1,LOC107695883 coding downstream 4495 9049521 ~ 9082049 (-)
chpt1 chpt1,LOC107590206,LOC107725616,LOC107695881,LOC107744925,LOC107664854,LOC107588513,LOC107085961 coding downstream 37713 9042013 ~ 9048831 (-)
dram1 LOC107725538,LOC107591237,LOC107695863,LOC107664855,LOC107596679,LOC107744952 coding downstream 63112 9018330 ~ 9023432 (-)
nrip2 nrip2,LOC107725649,LOC107695877,LOC107588270,LOC107744921,LOC107664860,LOC107590947 coding downstream 86086 8977878 ~ 9000458 (-)
pah pah,LOC107695873,LOC107744915 coding downstream 201528 8874712 ~ 8885016 (-)
spic spic,LOC107695854,LOC107725559,LOC107590981,LOC107596776,LOC107744943,LOC107664892 coding upstream 1229 9089590 ~ 9092106 (-)
dnajb9b LOC107725537,LOC107590229,LOC107596855,LOC107664893,LOC107695887,LOC107744927 coding upstream 9544 9097905 ~ 9100722 (-)
avpr2l avpr2l,LOC107725532,LOC107695886,LOC107744926,LOC107590222,LOC107664848,LOC107588672 coding upstream 15215 9103576 ~ 9106985 (-)
anks1b anks1b,LOC107664870 coding upstream 15220 9103581 ~ 9269843 (-)
plxnc1 plxnc1,LOC107664865,LOC107590996,LOC107744945,LOC107695856,LOC107725519 coding upstream 213120 9301481 ~ 9316243 (-)
G27425 NA non-coding downstream 62467 9023877 ~ 9024077 (-)
G27417 NA non-coding downstream 82321 9003923 ~ 9004223 (-)
G27306 LOC107725624,LOC107744919,LOC107590167,LOC107587911,LOC107664885,LOC107695875 non-coding downstream 125111 8960446 ~ 8961433 (-)
G27279 NA non-coding downstream 198591 8887186 ~ 8887953 (-)
G27253 NA non-coding downstream 271532 8809767 ~ 8815012 (-)
LOC122343442 NA non-coding upstream 241646 9330007 ~ 9341739 (-)
G27469 NA non-coding upstream 410355 9498716 ~ 9504000 (-)
G27532 NA non-coding upstream 456847 9545208 ~ 9545421 (-)
LOC122342618 NA non-coding upstream 459278 9547639 ~ 9552161 (-)
G27540 LOC107732962,LOC107553866,LOC107725684,LOC107695899 non-coding upstream 477086 9565447 ~ 9568297 (-)
klhl42 klhl42 other downstream 77240 9004260 ~ 9009304 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other downstream 145141 8892019 ~ 8941403 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other downstream 211946 8870215 ~ 8874598 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other downstream 568961 8513630 ~ 8517583 (-)
G27232 LOC107589947,LOC107725677,LOC107659846,LOC107586091,LOC107694692 other downstream 618516 8460506 ~ 8468028 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other upstream 183611 9271972 ~ 9300179 (-)
zgc:193726 NA other upstream 1267350 10355711 ~ 10363566 (-)
cacna2d4a cacna2d4a,cacna2d4,LOC107694142,LOC107738821 other upstream 1396561 10484922 ~ 10522249 (-)
dcp1b dcp1b,LOC107590561,LOC107738825,LOC107733007,LOC107589040,LOC107699046,LOC107694173 other upstream 1436170 10524531 ~ 10533543 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other upstream 2326359 11414720 ~ 11573766 (-)

Expression


Co-expression Network