lhfpl3 (lhfpl3,LOC107680022,LOC107694191)


Basic Information

Item Value
gene id lhfpl3
gene name lhfpl3,LOC107680022,LOC107694191
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11618061 ~ 11652758 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237647.1
CCACCTATGATCCCTGGGACGCCTGCAGCGATGCTCCCAGCCACGGAGGCGGCCAAGATCTACCAGACCAACTATGTCAGGAACTCTCGAGCCATCGGGGTCCTGTGGGCCATCTTCACCATCCTCTTCGCCATCGTTAACGTGGTATGTTTCGTTCAGCCCTATTGGATCGGGGACGGCATGGACACGCCGCAGGCCGGCTACTTCGGCCTCTTTCACTACTGCATAGGGAGCGGGATGTCCCGGGACCTGAAGTGCCAGGGGAGCTTCACGGAGTTTGGCTCCATCCCGTCTAGCGCCTTCAAAGCCGCGTCCTTCTTCATCGGGATGTCCATGGTACTGGTCCTCTCCTGCATCGGCTGCTtcgccttcttcttcttctgcagtACAGCCACTGTGTATAAGATCTGTGGGTGGATGCAGCTGGCAGCAGGTACGTGTCTGGTGTTGGGCTGTATGATATATCCTGATGGCTGGGATGCCGATGAGGTGAAGAGGATGTGCGGAGAAGGGACGGATAAATACACCATCGGAGCATGCTCGGTGCGCTGGGCATACATCCTGGCCATTATGGGCATCTTGGACGCCCTTATTCTCTCTTTCCTGGCTTTCGTGCTGGGCAACAGGCAGGATGGACTCATGTCCGAGGAGCTGCTGGGAGACAAGAGCGGAAATGCGTAGATGCCAGATACACTCAGGTGTTTCTGGCTCGTTCAAGGAAAATCTTTACGTGAAATCACAATCCAGCTTTACCCATCATCCTGAGGGCAGGAAGCCTGACTGCAGcagtttgaaaaaacaaaacaaaacaaaacaaaacaaaaaaaacgttaaagCGAAGAAGGCAAACAGGGTGAACGGAGTTGGGAACTCACTGCTTTTCTGTCCATATCCCTTCTTTGCACTTCACTCCCTGGAATTGCTTCTCAACCCTAGTTTGATTTACCGTGTTCTGTGCTACTAACATGATAGGGCAGCTAATGCACCGTTTAGAAGTAACTTTGACTTggattaatgataataataataataataattaaaaaaaaaaactatttattttactttatgtcCTCTTTTAAAAGCCtgcattattataatgttaatattttgggATTTACTGTAAAACACTGACTGGATTCTCCAATAtagaagaaaatatttacaggCTTGAATTCTGGGATGTACACTACGGCACAGAGACATTTCCGGCCTGTTACTATTTCTCTTATCGCCACCACCCCTGGAcggacgcgcacacacacacacacaaaaacacacacacacacacagagagagagagagaggcaaaaCGGGACACTGAATCCAGACCACTTACCTGAGAACCAGATGTGATCATTGGGtttcaaaatgtacaataatttcACAAATCTATCCAACATTGTTTAAAAGGGGTATGTAAACAGAAGTTGAGAGTTcactgttaatatattttaaaaataagtgtcAAAATTAGGGGCAGGCATCTCTGCCATTAGTAATTGTGCACAAGCCAAGTATATACAGAATTAGGAGAGTGTTTTAAGTATTATGTATTGAGTGTATATGTTGAATTTCTGTATGTCTCTAATTCGATATTTACTTCTCGGCAGTGTTGGTGCTGTATAGTTATGTGTGCCATTATTATGATGTTCTCAGCTGGTACCGTTTTGTACTCTTGGTATAATCATTCTGTCCCACCAAGATAAACGAGCAGCCTAGGATCGCCAATCAAATGTGACGGGAAAACCTGGAGGATGCGGTTCAAAACGCAAACGCCCACAGGAAGTGACCTCACTGTGTACCTAGTGCCACTCCCTCCCTTCTTAAGACGGCTGAAGAGTTTGGACAATGCTGGATGACGTTCTGAacggaaaggaaaaaaaaaaaatacggtttgctttatttattgggTGTCTGTCTTGTCAGATGATGTTGTATGTagaaaaatgctgtaaatacaccattaaaatgtattagttatAAAAGTTCATTAAAGACAATTCACCCACATTAATGAATAAAGATTTTACCTCTACAGACTACAA
>XM_043237648.1
CCACCTATGATCCCTGGGACGCCTGCAGCGATGCTCCCAGCCACGGAGGCGGCCAAGATCTACCAGACCAACTATGTCAGGAACTCTCGAGCCATCGGGGTCCTGTGGGCCATCTTCACCATCCTCTTCGCCATCGTTAACGTGGTATGTTTCGTTCAGCCCTATTGGATCGGGGACGGCATGGACACGCCGCAGGCCGGCTACTTCGGCCTCTTTCACTACTGCATAGGGAGCGGGATGTCCCGGGACCTGAAGTGCCAGGGGAGCTTCACGGAGTTTGGCTCCATCCCGTCTAGCGCCTTCAAAGCCGCGTCCTTCTTCATCGGGATGTCCATGGTACTGGTCCTCTCCTGCATCGGCTGCTtcgccttcttcttcttctgcagtACAGCCACTGTGTATAAGATCTGTGGGTGGATGCAGCTGGCAGCAGGTACGTGTCTGGTGTTGGGCTGTATGATATATCCTGATGGCTGGGATGCCGATGAGGTGAAGAGGATGTGCGGAGAAGGGACGGATAAATACACCATCGGAGCATGCTCGGTGCGCTGGGCATACATCCTGGCCATTATGGGCATCTTGGACGCCCTTATTCTCTCTTTCCTGGCTTTCGTGCTGGGCAACAGGCAGGATGGACTCATGTCCGAGGAGCTGCTGGGAGACAAGAGCGGAAATGCGTAGATGCCAGATACACTCAGGTGAGTGAGGTGTTTCTGGCTCGTTCAAGGAAAATCTTTACGTGAAATCACAATCCAGCTTTACCCATCATCCTGAGGGCAGGAAGCCTGACTGCAGcagtttgaaaaaacaaaacaaaacaaaacaaaacaaaaaaaacgttaaagCGAAGAAGGCAAACAGGGTGAACGGAGTTGGGAACTCACTGCTTTTCTGTCCATATCCCTTCTTTGCACTTCACTCCCTGGAATTGCTTCTCAACCCTAGTTTGATTTACCGTGTTCTGTGCTACTAACATGATAGGGCAGCTAATGCACCGTTTAGAAGTAACTTTGACTTggattaatgataataataataataataattaaaaaaaaaaactatttattttactttatgtcCTCTTTTAAAAGCCtgcattattataatgttaatattttgggATTTACTGTAAAACACTGACTGGATTCTCCAATAtagaagaaaatatttacaggCTTGAATTCTGGGATGTACACTACGGCACAGAGACATTTCCGGCCTGTTACTATTTCTCTTATCGCCACCACCCCTGGAcggacgcgcacacacacacacacaaaaacacacacacacacacagagagagagagagaggcaaaaCGGGACACTGAATCCAGACCACTTACCTGAGAACCAGATGTGATCATTGGGtttcaaaatgtacaataatttcACAAATCTATCCAACATTGTTTAAAAGGGGTATGTAAACAGAAGTTGAGAGTTcactgttaatatattttaaaaataagtgtcAAAATTAGGGGCAGGCATCTCTGCCATTAGTAATTGTGCACAAGCCAAGTATATACAGAATTAGGAGAGTGTTTTAAGTATTATGTATTGAGTGTATATGTTGAATTTCTGTATGTCTCTAATTCGATATTTACTTCTCGGCAGTGTTGGTGCTGTATAGTTATGTGTGCCATTATTATGATGTTCTCAGCTGGTACCGTTTTGTACTCTTGGTATAATCATTCTGTCCCACCAAGATAAACGAGCAGCCTAGGATCGCCAATCAAATGTGACGGGAAAACCTGGAGGATGCGGTTCAAAACGCAAACGCCCACAGGAAGTGACCTCACTGTGTACCTAGTGCCACTCCCTCCCTTCTTAAGACGGCTGAAGAGTTTGGACAATGCTGGATGACGTTCTGAacggaaaggaaaaaaaaaaaatacggtttgctttatttattgggTGTCTGTCTTGTCAGATGATGTTGTATGTagaaaaatgctgtaaatacaccattaaaatgtattagttatAAAAGTTCATTAAAGACAATTCACCCACATTAATGAATAAAGATTTTACCTCTACAGACTACAA

Function

symbol description
lhfpl3 Predicted to be involved in sensory perception of sound. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in central nervous system. Orthologous to human LHFPL3 (LHFPL tetraspan subfamily member 3).

NR:

description
PREDICTED: uncharacterized protein LOC106592871

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23893 LHFPL; LHFPL tetraspan subfamily member protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237647.1 False 2045 mRNA 0.44 4 11618061 11652758
XM_043237648.1 True 2054 mRNA 0.44 4 11618061 11652758

Neighbor

gene id symbol gene type direction distance location
guca1a guca1a,LOC107590762,LOC107755893,LOC107590961 coding upstream 11490 11602201 ~ 11606571 (+)
llph llph,LOC107755886,LOC107590743,LOC107694185,LOC107680014 coding upstream 42824 11573747 ~ 11575237 (+)
myf6 LOC107755889,LOC107749082,LOC107694156,LOC107680015 coding upstream 291368 11324633 ~ 11326693 (+)
syt1a syt1a,LOC107560302,LOC107694178,LOC107734425,LOC107755909,LOC107590640,LOC107680026 coding upstream 461317 10998929 ~ 11156744 (+)
nav3 nav3,LOC107755908,LOC107680031 coding upstream 635247 10857085 ~ 10982814 (+)
sema3c sema3c,LOC107694195,LOC107680038,LOC107710663,LOC107755880 coding downstream 87974 11740732 ~ 11783807 (+)
slc35e3 slc35e3,LOC107710682,LOC107737854 coding downstream 361828 12014586 ~ 12018965 (+)
mdm2 mdm2,LOC107590969,LOC107710681,LOC107692244,LOC107737846,LOC107694202 coding downstream 367863 12020621 ~ 12027468 (+)
LOC122342854 trhde,si:ch211-198g19.1,LOC107556776,LOC107666938,LOC107590972,LOC107710683,LOC107710667,LOC107669707,LOC107737852 coding downstream 420945 12073703 ~ 12147286 (+)
LOC122342787 si:ch211-198g19.1,si:ch211-149p5.1,trhde,LOC107590972,LOC107710683,LOC107556776 coding downstream 517369 12170127 ~ 12267756 (+)
G27827 NA non-coding upstream 16026 11599745 ~ 11602035 (+)
G27826 NA non-coding upstream 19746 11597872 ~ 11598315 (+)
G27825 NA non-coding upstream 20358 11597295 ~ 11597703 (+)
G27805 LOC107590700,LOC107590977,LOC107694182,LOC107755902 non-coding upstream 173345 11443224 ~ 11444716 (+)
G27801 NA non-coding upstream 183730 11429962 ~ 11434331 (+)
G27836 kmt2e,LOC107590817,LOC107710662 non-coding downstream 714 11653472 ~ 11654957 (+)
LOC122343275 NA non-coding downstream 21242 11674000 ~ 11678670 (+)
G27850 NA non-coding downstream 32125 11684883 ~ 11685136 (+)
G27851 NA non-coding downstream 32955 11685713 ~ 11688940 (+)
G27862 NA non-coding downstream 99910 11752668 ~ 11785852 (+)
acss3 acss3,LOC107694183,LOC107755903,LOC107680029,LOC107749070,LOC107560301,LOC107590709 other upstream 201834 11386130 ~ 11416227 (+)
myf5 LOC107560306,LOC107680018,LOC107749081 other upstream 283605 11331545 ~ 11334456 (+)
LOC122342850 LOC107740709 other upstream 909114 10707132 ~ 10708947 (+)
zmp:0000000650 LOC107694155,LOC107589077,LOC107732968,LOC107680013,LOC107574990 other upstream 915858 10686097 ~ 10702203 (+)
rassf8b rassf8,rassf8b,LOC107590609,LOC107589039,LOC107738830 other upstream 942951 10662231 ~ 10675110 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other downstream 36556 11689314 ~ 11691129 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other downstream 144224 11796982 ~ 11815305 (+)
kin kin,LOC102791470 other downstream 1497978 13150736 ~ 13154358 (+)
G28252 si:dkey-183c16.7,LOC107689220,LOC107755152 other downstream 1652911 13305669 ~ 13315684 (+)
G28249 LOC107689220,LOC107755152 other downstream 1670530 13323288 ~ 13530631 (+)

Expression


Co-expression Network