si:ch1073-67j19.1 (LOC107725978,LOC107743829,LOC107580374)


Basic Information

Item Value
gene id si:ch1073-67j19.1
gene name LOC107725978,LOC107743829,LOC107580374
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2907459 ~ 2908695 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237665.1
CTATAAAAGAACCGGTTCACCGTAGAAATAACATTCAGAATTTGAGATAAGCACTGAAGACGAGTTCACCACATCCAAGAAACATGAAGACCTCCACCCTCCTGTGTCTTTGTTTCTTAGGCTTCAGTCTGGCCGTGGAGGACGTGTATGAACATCTGTGGGAGAAGAATAAAGACATCGCCAGTGCGACAATTGAGTCGGACTTCCTCAGACAAATGGAGAACGGCAGCCTGCAGGCGGAGCGATACGTCAACTTCACCATCCAAGACATCGGCTATCTACTCAAAGTTACCAAGATGCTGAAGAGAATGAGTGCAAAAGTAGCTCTGCCCGAGGACATCAAGACCTTCATGGAAGGCAGATACTCCAGCTACAAAAGTTTCGCAGACTTCATGCTCAAACAATACTTTTTCAAGGGTGAGCCTCCCATTCAGGAAACTCCAGCTATGAAGCAGTATCTCTCGTACTACAGACACCTGATGATGAATGAAGACCCGCTGTACTTCGCTGTGGGTCTTCTGCCCTGCTCCAGACTCTGGCTTTGGCTGGCGGATAATCTCAGCACTCCTCCAACCAATGCCTACTACACCTGGAAGGTGGAGAATATGGAAGGCAATCCCGAGAAACACTACAAAGCTCTGCTGAACAAGCATCTGAACACAACCGCGAAGGTGCAGAAGGCTAATGTTGTTTTCCGCGCTCAGATGCAGCACGAGCGCGATTTCTTCTACTCGTCTTGAGAAAGAAATGTCGGCGAGacagtcaaatattttttaaatattgatggaTGTATTTGGTGATATATTTATAAGGTATGtgcaatacaaatatttaattatttaaaatgtacttaatacTTTATCCAGGCCTAATGCAATCTTGAACAACTGTAGATGTCCACAGCCTATctaaacagaaatgtaattttagtcTGTTGTTTCTGAATATCCAGTGTCATTACCcatcaacaataaaaatatctgctaataaaaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC107725978

GO: NA

KEGG:

id description
K03707 tenA; thiaminase (transcriptional activator TenA)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237665.1 True 993 mRNA 0.43 3 2907459 2908695

Neighbor

gene id symbol gene type direction distance location
elk3 elk3,LOC107743764 coding upstream 45070 2847274 ~ 2862389 (+)
mdfic mdfic,si:ch211-262n1.4,LOC107658868,LOC107656347,LOC107580133,LOC107584008 coding upstream 265622 2622539 ~ 2641837 (+)
foxp2 foxp2 coding upstream 304958 2505946 ~ 2602501 (+)
ifrd1 ifrd1,LOC107580056,LOC107726045,LOC107656357,LOC107658876,LOC107579159 coding upstream 513018 2388979 ~ 2394441 (+)
LOC122343453 LOC107710120,LOC107658877,LOC107726057,LOC107580024,LOC107656361,LOC107584004,LOC100535105 coding upstream 717711 2178532 ~ 2189748 (+)
LOC122342536 NA coding downstream 3483 2912178 ~ 2913479 (+)
phyh phyh,LOC107743808 coding downstream 7466 2916161 ~ 2920243 (+)
ucmaa ucmaa,ucma,LOC107658769,LOC107581267,LOC107656340 coding downstream 14526 2923221 ~ 2927098 (+)
cdc123 cdc123,LOC107658858,LOC107726014,LOC107656335 coding downstream 29377 2938072 ~ 2941597 (+)
camk1da camk1da,LOC107726013,LOC107743755,LOC107658855,LOC108428135,LOC108279878,LOC107656221 coding downstream 35229 2943924 ~ 2994499 (+)
LOC122343411 NA non-coding upstream 81670 2790078 ~ 2825789 (+)
LOC122343412 NA non-coding upstream 119802 2726802 ~ 2787657 (+)
LOC122342395 NA non-coding upstream 188098 2686424 ~ 2719361 (+)
LOC122342427 NA non-coding upstream 227716 2666342 ~ 2679743 (+)
LOC122342588 NA non-coding upstream 244414 2662114 ~ 2663045 (+)
G25453 NA non-coding downstream 22413 2931108 ~ 2931859 (+)
G25455 wnk1,wnk1b,LOC107725976,LOC107658853 non-coding downstream 26467 2935162 ~ 3030892 (+)
G25456 NA non-coding downstream 108872 3017567 ~ 3024764 (+)
G25502 LOC107573038 non-coding downstream 500306 3409001 ~ 3434462 (+)
G25504 NA non-coding downstream 511941 3420636 ~ 3429146 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 911923 1994240 ~ 1995536 (+)
LOC122342451 NA other upstream 1119363 1784237 ~ 1788096 (+)
LOC122343488 NA other upstream 1234500 1670512 ~ 1672959 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 1575616 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 1616235 1288297 ~ 1291224 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 191042 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 210820 3119515 ~ 3306758 (+)
G25514 NA other downstream 572934 3481629 ~ 3502094 (+)
G25551 NA other downstream 828807 3737502 ~ 3738594 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 1320934 4229629 ~ 4231092 (+)

Expression


Co-expression Network