six6b (six6b,six6,LOC107589092,LOC107743981,LOC107697293,LOC107701490,LOC103035477,LOC108257662)


Basic Information

Item Value
gene id six6b
gene name six6b,six6,LOC107589092,LOC107743981,LOC107697293,LOC107701490,LOC103035477,LOC108257662
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16955520 ~ 16958074 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237667.1
TCTACTCGAGCTCGGTTGCGCGTGATTGGCACGCTTGACAGTGATTGACAGGCGTCGGTGGAAACTACGCAACGCAATCTGCCAAGTCCAATAGAAAAACAGAAGCGGGCGGCACGTCTTTTTCCCTCCtcaaaaaacatcttcattctCGTGCTGTAATCTCGCGCCCTCGAACTCTCGGTGTCTCCAGAGCGACGTCTCTTATTTCTCGGCTTCCTCTACGTTCATCGGCTGACTCTGGGATTGCCTTTTTGTCTGGATTCGACCGGGGGAGACAGAGAAAAGCACGCTTAAAGCGCGAAGCTGCGCTTGAGGTAGCGAGGACTCCGAGGGGGGAAACAGAAGCCTTCATGTTTCAGTTGCCAATCTTGAATTTCAGTCCCCAGCAGGTAGCGGGGGTATGCGAGACTCTGGAAGAGAGCGGAGACATCGAGCGTCTCGGCCGGTTCCTGTGGTCGCTGCCCGTCGCGCCCGCCGCCTGCGAGGTGCTCAACAGAAATGAGTCCGTGCTGCGGGCTCGGGCTATCGTAGCCTTCCACACCGGGAATTTCCGCGAGCTTTACCACATTCTGGAGAACCACAAGTTCACCAAAGAGTCGCACTCCAAGCTGCAGGCGCTTTGGCTGGAGTCACACTACCAGGAGGCGGAGAAGCTCCGAGGACGCCCGCTGGGGCCGGTGGACAAATACCGGGTACGGAAGAAGTTCCCTCTGCCTAAAACAATTTGGGATGGAGAACAAAAGACGCACTGCTTTAAAGAAAGGACCCGGCATTTGCTTCGAGAATGGTACCTCCAGGACCCTTATCCGAACCCGAGTAAAAAGAGAGAGCTTGCACAGGCTACGGGACTCACTCCCACTCAAGTGGGGAATTGGTTTAAAAATCGAAGACAAAGGGACAGAGCCGCGGCCGCTAAAAACAGgTTACAACAGCAGGTGCTGTCTAACGGCTCGGTTCGGTCCCTAACCGGAGAGGACGGCGCTGTAGACCGACTGGGGAACGCGTCGAGCCCCGAAGCGAGCCTGTCGAGCAAAGCCGCCGCGTCGGCGATCTCCATCACTTCTAGTGACAGCGAATGTGACATCTAACATCGCACCACGAACCGGCCCGCGGGCCATACGGGAAGACTATGAGAAAATTAACACGTACGAAGGAAATCGAGACAGACAATCAGCAAGATAAACAAGCACATTAGTGCCTGCCTTAACGTATCAGAGGccgtgtttttatttaatttcgtttcgttttttttatttgcaggcTGTTACGCCAGCCCGGAATCGTGGGATT

Function

symbol description
six6b Enables double-stranded DNA binding activity. Involved in gene expression. Acts upstream of or within camera-type eye development and cell population proliferation. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in brain; eye; and kidney. Human ortholog(s) of this gene implicated in optic disc anomalies with retinal and/or macular dystrophy. Orthologous to human SIX6 (SIX homeobox 6).
six6 Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in eye development and regulation of transcription by RNA polymerase II. Predicted to be part of chromatin and transcription regulator complex. Predicted to be active in nucleus. Implicated in optic disc anomalies with retinal and/or macular dystrophy.

NR:

description
PREDICTED: homeobox protein SIX6-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19473 SIX3_6, OPTIX; homeobox protein SIX3/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237667.1 True 1290 mRNA 0.54 2 16955520 16958074

Neighbor

gene id symbol gene type direction distance location
hif1ab hif1a,LOC107589062,LOC107743977,LOC107563689 coding downstream 74125 16868461 ~ 16881395 (-)
snapc1a LOC107743976,LOC107697295,LOC107589064 coding downstream 87535 16864505 ~ 16867985 (-)
sgpp1a si:ch211-212g7.6,LOC107697306,LOC107589063,LOC107743975,LOC107716492,LOC107701492,LOC107563688 coding downstream 91097 16852999 ~ 16864423 (-)
ppp2r5ea ppp2r5ea,LOC107701493,LOC107707079,LOC107563687,LOC107697307,LOC107743972,LOC108434994,LOC108257929,LOC103032801 coding downstream 104364 16840705 ~ 16851156 (-)
kcnh5a kcnh5a,LOC107743971,LOC107697309,LOC107563685,LOC107701494,LOC107707078,LOC108434995 coding downstream 134050 16748716 ~ 16821470 (-)
ppm1ab ppm1ab,LOC107718411,LOC107697300,LOC107701489,LOC107589071,LOC107560378,LOC107743982 coding upstream 29234 16987308 ~ 16993364 (-)
ckbb ckb,ckbb,LOC107560383,LOC107755234,LOC101477834 coding upstream 127388 17085462 ~ 17089500 (-)
LOC122342663 NA coding upstream 165833 17123907 ~ 17130265 (-)
btbd6b btbd6b,LOC107589075,LOC107755235,LOC107718408,LOC107560384,LOC107701487,LOC107683969 coding upstream 179991 17138065 ~ 17143280 (-)
LOC122343418 LOC107683962,LOC107701452,LOC107755208,LOC107601897,LOC107568118,LOC107718425 coding upstream 452944 17411018 ~ 17482755 (-)
LOC122342882 NA non-coding downstream 30555 16908209 ~ 16924965 (-)
G29021 NA non-coding downstream 253849 16701068 ~ 16701671 (-)
G29012 NA non-coding downstream 345521 16609636 ~ 16609999 (-)
LOC122342602 NA non-coding downstream 404516 16550333 ~ 16551004 (-)
LOC122342601 NA non-coding downstream 409899 16544954 ~ 16545621 (-)
G29143 NA non-coding upstream 80753 17038827 ~ 17040834 (-)
G29179 NA non-coding upstream 261077 17219151 ~ 17219453 (-)
G29212 NA non-coding upstream 391215 17349289 ~ 17349506 (-)
G29273 NA non-coding upstream 595688 17553762 ~ 17553964 (-)
G29388 NA non-coding upstream 684305 17642379 ~ 17642637 (-)
prkchb prkchb,LOC107743988,LOC107697294,LOC107701491,LOC107718442,LOC107589067,LOC107563690 other downstream 55225 16886153 ~ 16900295 (-)
G29022 chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496 other downstream 246560 16707774 ~ 16708960 (-)
G28898 NA other downstream 1022656 15932494 ~ 15932864 (-)
kiaa0930 zgc:172139,kiaa0930,LOC107601010,LOC107719873,LOC107687566,LOC107699202 other downstream 1343945 15601440 ~ 15611575 (-)
LOC122342864 rpl34,LOC107566275,LOC107573163,LOC107681344 other downstream 1927857 15024587 ~ 15027663 (-)
G29135 NA other upstream 48853 17006927 ~ 17017823 (-)
xrcc3 xrcc3,LOC107755221,LOC107683971,LOC107560377 other upstream 160269 17118343 ~ 17122129 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other upstream 678949 17637023 ~ 17638742 (-)
LOC122342228 scgn,LOC107693759,LOC107757885,LOC107669120,LOC107714763,LOC107747999,LOC107663245 other upstream 776532 17734606 ~ 17744543 (-)
G29417 NA other upstream 777276 17735350 ~ 17736274 (-)

Expression


Co-expression Network