ldhba (ldhba,LOC107659842,LOC107589975,LOC107744904,LOC107725606,LOC107694687,LOC107586539)


Basic Information

Item Value
gene id ldhba
gene name ldhba,LOC107659842,LOC107589975,LOC107744904,LOC107725606,LOC107694687,LOC107586539
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8504441 ~ 8509566 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237670.1
AGGTCGTACGCTCTCTGCGTAGCGCAGCGCGCGCTCAAATCCCCCTCCTCCGCGACTCACGCGACCGCGCACGCACGCTCGCTCGCTCACCGGTGCTCAGCGGCTCTCACTGCCCTTCCTGCAGCTAAGGATACTTATCTGACATTCCTGCAACAAATCGGGATCATGGCCTCAGTAATGCAGAAACTGATCACCCCCCTGGCCAGCGGCCCCACTGAGCCCCCCAGGAACAAAGTCACAATTGTTGGCGTGGGACAGGTGGGCATGGCGTGTGCCGTCAGCATCCTACTCCGGGAGCTTGCAGATGAGCTGGCTTTGGTTGATGTTGTGGAGGACAGACTGAAGGGGGAGATGTTGGATCTGCAACATGGCAGCCTCTTCCTCAAGACGCCTAAGATTGTGGCTGATAAGGACTACTCGGTGACCGCTAACTCTCGTATCGTGGTGGTGACGGCCGGAGTGCGTCAGCAGGAGGGCGAGAGCAGACTGAACCTTGTGCAGAGAAACGTCAACATTTTCAAACACATCATCCCTCAGATTGTCAAATACAGTCCCGACTGCACCCTCATCGTGGTGTCCAATCCAGTGGATGTTTTGACTTACGTGACCTGGAAGCTGAGCGGCCTGCCAAAGCACCGTGTGATCGGCAGCGGGACCAACCTGGACTCTGCTCGCTTCCGCTTCATCATGGCCGAGAAGCTGGGCATCCATGCCAGCAGCTTCAACGGCTATATTTTGGGAGAGCACGGAGACTCTAGCGtGCCTGTGTGGAGCGGAGCGAATGTTGCTGGAGTCAGCCTGCAGAAACTCAACCCTGACATTGGCACAGATAAAGACAGCGAGAACTGGAAGGAAGCTCACAAGATGGTTGTGGACAGTGCTTATGAAGTGATCAAGCTGAAGGGTTACACTAACTGGGCCATCGGCCTCAGTGTGGCCGACCTGACCGAGACCCTTGTGAAGAACCTGAACCGGGTCCACCCTGTCTCCACCATGGTGAAGGGCATGTACGGTATCGGCGAGGAGGTGTACCTCAGCCTGCCCTGTGTGCTGAACAGCAGCGGAGTGGGCAGCGTCATCAACATGACCCTGAACGACGAAGAAATCTCTCAGCTGAAGAAGAGCGCAGACACTCTGTGGGGTATCCAGAAAGACCTTAAGGACCTGTAGACCAGCCGCGGGACACCGTGCACTCCTTCCCTTGACTCCGCTCACACTCCCCGGGTATCTTTACACACTCTCTAACTCGGTGTCTGTCCTTTCTTCTCACTTGCTTTTGGACACGGTTGCTTTGAAgtatttctcttttctttttctttttttcgtgGTGGTTAATGTAGGCACAGTAATAATCCAAAATGTGgaatttttcttcttctaaagaGAATGATCAAAGGGAAACATCTCTGGTTCTTCACATTTGCACTTGTTAACCTAGTCGCTCTGTGTGGGCAATAAAGAAAGAACCAACACCTCTCTTGTCTAGACATAATTGGGTGAGTTCATTAGGGAACGTTCTTGGGTCTTTCTGTTTAAGTCAAGAGGAGAAGGGattgaagagagagagatacaagTGTATTCATTCTTCTGAATCATGTTGTAAGTGTTGATCATGTGAGTGTAAaagatcaaattaataaatttaaaccTGTTCAAA

Function

symbol description
ldhba Predicted to enable L-lactate dehydrogenase activity. Predicted to act upstream of or within carbohydrate metabolic process and carboxylic acid metabolic process. Predicted to be located in cytoplasm. Is expressed in several structures, including alar plate midbrain region; musculature system; nervous system; pronephric duct; and yolk syncytial layer. Orthologous to human LDHB (lactate dehydrogenase B).

NR:

description
PREDICTED: L-lactate dehydrogenase B chain isoform X2

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0044262 cellular carbohydrate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004459 L-lactate dehydrogenase activity molecular_function

KEGG:

id description
K00016 LDH, ldh; L-lactate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237670.1 True 1657 mRNA 0.52 8 8504441 8509566

Neighbor

gene id symbol gene type direction distance location
gys2 gys2,LOC107659841,LOC107694689 coding downstream 2503 8490359 ~ 8501938 (-)
dennd5b dennd5b,LOC107659847,LOC107725568,LOC107744899,LOC107694693 coding downstream 45439 8424095 ~ 8459002 (-)
sinhcaf fam60a,LOC107694695,LOC107586002,LOC107725569,LOC107744898,LOC107659848,LOC103028480 coding downstream 81536 8415293 ~ 8422905 (-)
caprin2 LOC107725657,LOC107744896,LOC107694696 coding downstream 90112 8405825 ~ 8414329 (-)
btg1 btg1,LOC107585922,LOC107725570,LOC107659850,LOC107744895,LOC107690792,LOC107565641 coding downstream 129929 8367536 ~ 8374512 (-)
tmpoa tmpoa,LOC107694685,LOC107744905,LOC107725605,LOC107590013 coding upstream 8468 8518034 ~ 8528270 (-)
LOC122342917 strap,LOC107725662,LOC107590065,LOC107744907,LOC107586834,LOC107659840,LOC107694684 coding upstream 18807 8528373 ~ 8532454 (-)
sox5 sox5,LOC107590035,LOC107725540,LOC107744909,LOC107587062 coding upstream 69485 8579051 ~ 8752834 (-)
LOC122343383 LOC107659831,LOC107744910,LOC107664834 coding upstream 270724 8780290 ~ 8803840 (-)
LOC122343226 parpbp,LOC107744914,LOC107659825,LOC107590919,LOC107593393,LOC107664835 coding upstream 333641 8843207 ~ 8857050 (-)
G27240 NA non-coding downstream 26130 8476164 ~ 8478311 (-)
LOC122342531 NA non-coding downstream 257932 8200177 ~ 8246509 (-)
LOC122342218 NA non-coding downstream 334854 8168273 ~ 8169587 (-)
G27063 NA non-coding downstream 377617 8126342 ~ 8126824 (-)
G27050 NA non-coding downstream 380581 8123114 ~ 8123860 (-)
G27249 LOC107725541,LOC107659837,LOC107590048 non-coding upstream 24265 8533831 ~ 8536676 (-)
LOC122343385 NA non-coding upstream 252533 8762099 ~ 8774171 (-)
G27263 NA non-coding upstream 294589 8804155 ~ 8805230 (-)
G27257 NA non-coding upstream 295678 8805244 ~ 8809184 (-)
G27253 NA non-coding upstream 300201 8809767 ~ 8815012 (-)
G27232 LOC107589947,LOC107725677,LOC107659846,LOC107586091,LOC107694692 other downstream 36413 8460506 ~ 8468028 (-)
LOC122343432 NA other downstream 254514 8247911 ~ 8249927 (-)
G26951 NA other downstream 945988 7555115 ~ 7558453 (-)
si:dkey-261e22.4 NA other downstream 1283530 7214334 ~ 7220911 (-)
il22 NA other downstream 1763700 6737641 ~ 6740741 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other upstream 4064 8513630 ~ 8517583 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other upstream 360649 8870215 ~ 8874598 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other upstream 382453 8892019 ~ 8941403 (-)
klhl42 klhl42 other upstream 494694 9004260 ~ 9009304 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other upstream 762406 9271972 ~ 9300179 (-)

Expression


Co-expression Network