cwf19l1 (cwf19l1,LOC107695878,LOC107725658,LOC107744920,LOC107664857)


Basic Information

Item Value
gene id cwf19l1
gene name cwf19l1,LOC107695878,LOC107725658,LOC107744920,LOC107664857
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9010162 ~ 9015256 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237671.1
CTCTTTTCTGACGGGGTTTATTTTGTCGACGCACACAGTTTAACGTCAACGCTCAGACACAAGAGACGTTAATTTTAAGAGTCTTTaagaacatttatatattattcgGCATGGGAGATAAGCCTTTACGAGTaCTCGCGTGTGGTGACGTTGAAGGAAgaataaatgctttgttcaACCGGGTGAACGCCATTCAGAAAAAGAGCGGGCAATTTGATTTGCTGCTGTGTGTTGGTGAATTTTATGGAAACTCTCCTGAGGCTGAAGCAGAATGGGAAGCGTACAAATCCGGTGCCAAAAAGGCCCCCATTCACACATACATCCTCGGCGCAACCAGCCAAGACACTGTGAAGTATTTCCCAAACTCTGATGGCTGCGAGCTGGCAGAAAACATCACATATTTGGGTCGAAGAGGCGTTTTCACCGGGGCGTCGGGGCTCCAGATCGCCTATGTCAGTGGCAGAGAAGCTCAGCAGGAGCCTGCTCCCTCGCACTGCTTCACCTCTAAAGACACCGCTGCCCTGGTGGCCCCGCTGCTGTCCAGCTCCAAATTTCGAGGAGTGGATATTCTCCTGACGTCGCAGTGGCCTCGGGGCGTGTGGCAGTACGGAAACAGTCCCGAAACCGATGCAAAGTTTTGTGGGGTTTCGTCCATCGCAGATCTCGCTGACAAGCTGAAGCCCCGCTACCATTTCGCAGGACTGGAAGCAGTCCATTACGAGAGGCTGCCTTACAGGAATCACGTGGTGCTTCAGGAGAATGCTCAGCATGTCAGTAGATTCATCTCTTTGGCTACTGTCAACAACCCTGCCAAAAAGAAGtatttgtACGCTTTCAACATCGTCCCGATGAAAAACATGGACCCTGCAGAGTTAGTCAAACAGCCTCAGGATGTCACAGAAAATCCCTACAGGAAACCTATGAAAGAcgggaagaaagaaaaaccgCCACCCTCTATGACAGGCGAAGAGGAGGAGCCAGCAACCCAGTTCTTTTTTGATCTGGGCCAGAACAAACCACAGCACCAGCAGCGTCACGGCAGGAAGAGACAAACAGACGGAGACAGACCTAATTACCCCAAACAGCCCCGAAGACCCCCGCAGCCCACTGGACCCTGCTGGTTCTGCCTGGCGAGTCCAGAAGTCGAGAAGCACTTGGTCATAAGCATCGGAACACACTGTTACGTGGCTCTGGCTAAGGGTAGTCTCACTCCTGACCATGTTCTCCTGCTGCCTATCGGTCATTACCAGTCAGTGGTGGATCTGGCATCGGAGGTGGTTGAAGAGATGGACAAATACAAGAGTGCCATCAAGAAGTTCTGTAAAAGCAGAGGCCGGCGGTGTGTCCTTTTTGAGAGGAACTACCGCAGCCAGCACCTTCAACTACAGGTAGTGCCGGTGCCCGTGGAGAAGTGCAGCACCGAAGACATCAAGGAGGCGTTCATGACACAAGCTGAAGAGCAGCAGATAGAGCTAATGGAGATTCCAGCTCACACAGACCTCAAACAGATTGCTCCTCCAGGAACGCCCTACTTTTACGTGGAGCTGGACACAGGCGAGAAGCTCTTTTATCGCATCAAGAAAAATTTTCCTTTGCAGTTTGGCAGGGAAGTGTTAGCGAGCGAGGCGCTGTTGAACATCCCCATGCGGGCCGACTGGAGAGAGTGCAAATGTAcaaaggaggaggaagaggatcaGGCCAAACAAATGCGCTCGGACTTTGAGCCCTTCGACTTCGCACTCAATGACTGAGCAAACGTTTCGAACGCATCTGACTCGATCCCTTCTTGATAATGAACTCGATCAGTGTGTCAGCTGTTTATTTTAtcgttttatgctttttaaattttgccCCATATACATCCTATTCCTTTCGTTGGCAGGCGGCCGGGAAATAGCTGTTGTCACAGTGGTCTTTCAAAAGATAACGTTTTTTCGTGATGGATCTCACGTTATGTTCAATTTAGTGTGAAATTTTGTTGTGACTCataattaaagtcattttttcaga

Function

symbol description
cwf19l1 Predicted to enable RNA lariat debranching enzyme activator activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of post-mRNA release spliceosomal complex. Is expressed in blood. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 17. Orthologous to human CWF19L1 (CWF19 like cell cycle control factor 1).

NR:

description
PREDICTED: CWF19-like protein 1

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K24939 CWF19L1, DRN1; CWF19-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237671.1 True 2010 mRNA 0.50 14 9010162 9015256

Neighbor

gene id symbol gene type direction distance location
itfg2 itfg2 coding upstream 39568 8962606 ~ 8970594 (+)
recql recql,LOC107695875,LOC107590167,LOC107725624,LOC107587911,LOC107744919,LOC107664885 coding upstream 48929 8953947 ~ 8961233 (+)
nup37 nup37,LOC107590136,LOC107695872,LOC107664874,LOC107744917 coding upstream 144244 8855404 ~ 8865918 (+)
pmch pmch,LOC107659836,LOC107591230 coding upstream 166912 8841744 ~ 8843250 (+)
igf1 igf1,LOC107659835,LOC107725558,LOC107664880 coding upstream 177530 8821730 ~ 8832632 (+)
gnptab gnptab,LOC107695880,LOC107664853,LOC107725516,LOC107725515 coding downstream 9221 9024477 ~ 9041856 (+)
LOC122343441 LOC107553872,LOC107593900 coding downstream 302324 9317580 ~ 9323622 (+)
LOC122343440 NA coding downstream 309644 9324900 ~ 9333048 (+)
ncaph2 ncaph2,LOC107725678,LOC107590292,LOC107732965,LOC107553878 coding downstream 340711 9355967 ~ 9373818 (+)
slc26a4 slc26a4,LOC107664887,LOC107695858,LOC107553866,LOC107733015 coding downstream 530429 9545685 ~ 9554560 (+)
G27301 NA non-coding upstream 57040 8952922 ~ 8953122 (+)
G27162 NA non-coding upstream 257313 8752438 ~ 8752849 (+)
G27121 NA non-coding upstream 505066 8471675 ~ 8505096 (+)
LOC122343529 NA non-coding upstream 632853 8374654 ~ 8377309 (+)
G27084 NA non-coding upstream 678860 8278559 ~ 8331302 (+)
G27345 NA non-coding downstream 38765 9054021 ~ 9057297 (+)
G27347 LOC107590965,LOC107695883 non-coding downstream 42612 9057868 ~ 9058292 (+)
G27352 NA non-coding downstream 53675 9068931 ~ 9076136 (+)
LOC122342713 NA non-coding downstream 62762 9078018 ~ 9081866 (+)
LOC122343257 NA non-coding downstream 73499 9088755 ~ 9098978 (+)
ascl1a ascl1a,ascl1,LOC107590149,LOC107664850,LOC107596391,LOC107744950,LOC106576285 other upstream 119986 8874717 ~ 8890176 (+)
etnk1 etnk1,LOC107725541,LOC107659837,LOC107694683,LOC107590048,LOC107744908 other upstream 462160 8533816 ~ 8548002 (+)
spx spx,LOC107589995,LOC107744902,LOC107694690,LOC107596170,LOC107725633 other upstream 518224 8487911 ~ 8491938 (+)
stmp1 NA other upstream 526331 8482890 ~ 8483831 (+)
G27079 NA other upstream 760939 8247912 ~ 8249223 (+)
washc3 ccdc53,LOC107695862,LOC107590199,LOC107596601,LOC107744922,LOC107664856 other downstream 585 9015841 ~ 9018333 (+)
apaf1 apaf1,LOC107744928 other downstream 23382 9038638 ~ 9221046 (+)
G27360 anks1b other downstream 147891 9163147 ~ 9227212 (+)
cfap54 cfap54,LOC107695893 other downstream 366286 9381542 ~ 9395757 (+)
wnt7ba wnt7ba,wnt7b,LOC107591249,LOC107695867,LOC107725526,LOC107732964,LOC107664847,LOC103028473 other downstream 488824 9504080 ~ 9522033 (+)

Expression


Co-expression Network