klhl42 (klhl42)


Basic Information

Item Value
gene id klhl42
gene name klhl42
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9004260 ~ 9009304 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237672.1
ATGACGTCCCCCGAGCAGATCGTCGAGATCGTGATGGACGACAAAACGTACAACGTGAGTAAAAGCAAGCTGATCGAGAAGAGCGACTACTTCCGCGCGCTGTACAGCTCCGGGATGCGCGAGTCGGCGGAGGACTCGGTGCAGCTGCGGGGGCTGAGCGCGTCCGGGCTGGAGCTGGTGCTGGAGTTCATCAACACCTCCAAAGTTCAGGTGGCCAACGAGACTCTGGAGGACCTGATCGAGACCGCGTCCTTCCTGCAGGTCACGTCCATCTTAAAGCTGCTGCTGTCGGAGATCAAGCAGGAGAACTGCGTGGAGCTCTTCAAGCTCTCGGAGGTCTACGGGATGCACGACCTCAGGAAGGCTTGCTTGAAGTTCATGAGCTGCTATTATCACCCCGTGCTGCGCAGGCCGGAGTTCAGGATGCTGGCAGCTCCTCTGCGGGACCAGATCCGAGACACGCGCATGAAAGGCACGGCCGCTTTAGTCGCGATAGGGGACTTCACCGACACCTGTCTGGACCTGGCCAATCAGGACGAGCCTTGGTCTATGCTGAGGTACGACGAGCTGGAACAGCGCTGGAAACCTCTAGCCAACAATCTCCCCCAGGACATGATCAACGTCCGAGGGTACGGATCTGCTGTGCTGGACAACTACTTGTTCATTGTCGGTGGATACAGAATGACTAGTCAGGAGATCTCGGTGGCCCACTGCTACAACCCCTGCAGGAATGAGTGGAACCACGTGGCACCTTTGAACCAGAAGAGATCCAACTTCAAGCTCCTGGCCGTGAGTGGGAAGCTGTATGCAGTTGGAGGTCACTGTCTGAGCACGGTGGAGTGTTACAGTCCAGAGCAGGACTGGTGGACGTGTGTGGCGTCTCTGCCCGACCCGCTCGCTGAGTTCTCTGCCTGTGAGTGTCAGGGCATGATCTACGTCATGGGCGGTTATACCTCTAGAGATAGGAACACCAGCGTGCTGCGCTACTGCCCCGTCTCAGACACATGGTCCGTGTTCCGCTCCTGTTCGGCTCACGTGCGCAAGCAGCAGATGCTCTCCGTGGAGGACACCATCTATCTGGTGGGAGGTTACACGCACGAGCTAGACCCTGCAGAAATGGGCCGGCGGAGACTCGGCCAGACGGAGGACATGCTGACGGTACAGTCCTACAACGTGCAGACGGGGGAATGGTTGCAACTGAAGGAAAACACGTCAAAGTCTGGCTTGAACCTCACCTGCACGCTGCACAACGACGGCATCTACATTATGAGCAGAGACGTCAGCCTGCCCACCAGCCTGGAGCATCGCGTCTTCCTCAAGTACAACATTTTCTCAGACGCCTGGGAGGCCTTCAGACGCTTTCCTGCTCTGGGGCAGAACATGCTGCTTTGCTCTCTCTACCTACCCAGTGTCCTGTGAGCCACGCTGCTCGAGGTCTGGGGGAACGGGTTTTGTTGTAGCGAGCCTGGCCTGGTCAGAAGCGGCAGGCTTGCCAGAGGTTTATCCCAAAGCTTTACCGGATCGGATTGATCAAGCAACACAAAGAACATGCAGGatacattaaaggaataatatAGCCAAACAATTACAATTTGGTCATTATTCACTCCCCCTCAAACCGTGTGACTTTAGGAgtgactgcttttttttttttttttacgttcagCTTTGTGTTTCGCGGAAGGAAAAAGTCACATAGGTTTGAAACAACGCTTACGTACGAATGTTATTacttttttggttaaataaagGCCTTTGGATTATTAAAATCAGAAGGaaaaaagcaatagttcaccgaAAAAAGACAGTTTGCTTAAAACGTATTCACCTTCAGGCCACTCATCAGACAGAGATTCACTCgtcagtttgtttcttcatcagaacagattcagAGAAATGTATTCAGCGTTGTATCTCCTGTTTAACAGCGGATCCTTTGTGGTAAAGGGGAATGAGAgacagctaataaaaacattacaagaaTCCACAAGTAGTTCACACGCCTttagtccatcaattaacatctcaTGAAACTAAAAGCTTTGTgcttgtaataaacaaatccaccattaaaaacatttttactttaaactacAAGTCCATAATCCAAAACACTTCCTCCAGGGGATAAAGTTAATTCCATCTTGCCCTCTCacatcaaaacatatttaaacagtgcttgatctgcGCAGATTTCTCTTCCGATTCAGGCAAGATGGCTTTTTCGCTGGAAAAAGCAGTATTATAGATATAATAGATAGTCTTGATGCATTCGTTCattacaaacacagcttttgaTCACTTTACAAGATGTTggttgatggactggagtcgcatgtgatgcttttatcagtctcattctgacggcacccattcgctgcagagcaccCGTTGATGAGCAATGCAAAACCTTTCCAAGATCCCTTCTGATAAAGAAACTAAAATTCttttacatcttggatgacctgagggtgagtacattttcagcaattcctttaatttttccgtaaattatttctttaatatatccATCAGAAGttacctaaaaaaaacactacaagaGATGCACCAAACATTTTCAACCTGCGAAGAATCTTCTAATGCCAAATGCATGACCAGTACCTTAAAGATATATCACATGACATATACAGAGTTTCTTCTACTAATATACAGATGCACAAGTGAAGGCTTCAGATTCATAAAGCGGGTGAAAAGAAAACACTAAACGTACATAAGCGGATTAAATAACTTTAACAGGAAGCGTTACTTGAAGACATCAAAGTGagagttcactcaaaaatgactgaaattgagttttggccataaaatcTAAGTCAGTGGGGTCTAATGATGTTTTGGACAACACTGACTTAAGTTAAATGGacttataaaaataagaaacgtGAGCGTGAGTAAATGCTCAGTGTTCgcatttgtgggtgaactgtgcctttaagacCCAATGTGCCAGACTAAATGGTGATTGTTGAAAATGTTACAGACTATATGTGCCTGAAAAagtcgttgttttttttttttaattacactttcAGTAGCCTTAGTTGAATAATTTTGTTTCCAAATAATGTCTATCTGGAGAAGTGTCTTAACCTGTGCTGCACAAATACATAAGCGCCTGACCTAACCGCTGTGAGGCATTTTTGCATTAAGTTTGATTGAGATGACCTGTTGAGatgttattttgaaagaaaaggagattcctttttttttgttttaagtactTAATACTTGTGTTCCATTCCTTTTTATAACTTTTTGATGACTTTGAGCCGAAATGAATAACGGTTTTGTTGAGCATTCCCAAGTTGCCTTGAAAATGTAAAGAagtaagttaaataaaaatgttcaggGAAGCAAATAAAAGGCTTCATGcta
>XM_043237673.1
ATGACGTCCCCCGAGCAGATCGTCGAGATCGTGATGGACGACAAAACGTACAACGTGAGTAAAAGCAAGCTGATCGAGAAGAGCGACTACTTCCGCGCGCTGTACAGCTCCGGGATGCGCGAGTCGGCGGAGGACTCGGTGCAGCTGCGGGGGCTGAGCGCGTCCGGGCTGGAGCTGGTGCTGGAGTTCATCAACACCTCCAAAGTTCAGGTGGCCAACGAGACTCTGGAGGACCTGATCGAGACCGCGTCCTTCCTGCAGGTCACGTCCATCTTAAAGCTGCTGCTGTCGGAGATCAAGCAGGAGAACTGCGTGGAGCTCTTCAAGCTCTCGGAGGTCTACGGGATGCACGACCTCAGGAAGGCTTGCTTGAAGTTCATGAGCTGCTATTATCACCCCGTGCTGCGCAGGCCGGAGTTCAGGATGCTGGCAGCTCCTCTGCGGGACCAGATCCGAGACACGCGCATGAAAGGCACGGCCGCTTTAGTCGCGATAGGGGACTTCACCGACACCTGTCTGGACCTGGCCAATCAGGACGAGCCTTGGTCTATGCTGAGGTACGACGAGCTGGAACAGCGCTGGAAACCTCTAGCCAACAATCTCCCCCAGGACATGATCAACGTCCGAGGGTACGGATCTGCTGTGCTGGACAACTACTTGTTCATTGTCGGTGGATACAGAATGACTAGTCAGGAGATCTCGGTGGCCCACTGCTACAACCCCTGCAGGAATGAGTGGAACCACGTGGCACCTTTGAACCAGAAGAGATCCAACTTCAAGCTCCTGGCCGTGAGTGGGAAGCTGTATGCAGTTGGAGGTCACTGTCTGAGCACGGTGGAGTGTTACAGTCCAGAGCAGGACTGGTGGACGTGTGTGGCGTCTCTGCCCGACCCGCTCGCTGAGTTCTCTGCCTATAGGAACACCAGCGTGCTGCGCTACTGCCCCGTCTCAGACACATGGTCCGTGTTCCGCTCCTGTTCGGCTCACGTGCGCAAGCAGCAGATGCTCTCCGTGGAGGACACCATCTATCTGGTGGGAGGTTACACGCACGAGCTAGACCCTGCAGAAATGGGCCGGCGGAGACTCGGCCAGACGGAGGACATGCTGACGGTACAGTCCTACAACGTGCAGACGGGGGAATGGTTGCAACTGAAGGAAAACACGTCAAAGTCTGGCTTGAACCTCACCTGCACGCTGCACAACGACGGCATCTACATTATGAGCAGAGACGTCAGCCTGCCCACCAGCCTGGAGCATCGCGTCTTCCTCAAGTACAACATTTTCTCAGACGCCTGGGAGGCCTTCAGACGCTTTCCTGCTCTGGGGCAGAACATGCTGCTTTGCTCTCTCTACCTACCCAGTGTCCTGTGAGCCACGCTGCTCGAGGTCTGGGGGAACGGGTTTTGTTGTAGCGAGCCTGGCCTGGTCAGAAGCGGCAGGCTTGCCAGAGGTTTATCCCAAAGCTTTACCGGATCGGATTGATCAAGCAACACAAAGAACATGCAGGatacattaaaggaataatatAGCCAAACAATTACAATTTGGTCATTATTCACTCCCCCTCAAACCGTGTGACTTTAGGAgtgactgcttttttttttttttttacgttcagCTTTGTGTTTCGCGGAAGGAAAAAGTCACATAGGTTTGAAACAACGCTTACGTACGAATGTTATTacttttttggttaaataaagGCCTTTGGATTATTAAAATCAGAAGGaaaaaagcaatagttcaccgaAAAAAGACAGTTTGCTTAAAACGTATTCACCTTCAGGCCACTCATCAGACAGAGATTCACTCgtcagtttgtttcttcatcagaacagattcagAGAAATGTATTCAGCGTTGTATCTCCTGTTTAACAGCGGATCCTTTGTGGTAAAGGGGAATGAGAgacagctaataaaaacattacaagaaTCCACAAGTAGTTCACACGCCTttagtccatcaattaacatctcaTGAAACTAAAAGCTTTGTgcttgtaataaacaaatccaccattaaaaacatttttactttaaactacAAGTCCATAATCCAAAACACTTCCTCCAGGGGATAAAGTTAATTCCATCTTGCCCTCTCacatcaaaacatatttaaacagtgcttgatctgcGCAGATTTCTCTTCCGATTCAGGCAAGATGGCTTTTTCGCTGGAAAAAGCAGTATTATAGATATAATAGATAGTCTTGATGCATTCGTTCattacaaacacagcttttgaTCACTTTACAAGATGTTggttgatggactggagtcgcatgtgatgcttttatcagtctcattctgacggcacccattcgctgcagagcaccCGTTGATGAGCAATGCAAAACCTTTCCAAGATCCCTTCTGATAAAGAAACTAAAATTCttttacatcttggatgacctgagggtgagtacattttcagcaattcctttaatttttccgtaaattatttctttaatatatccATCAGAAGttacctaaaaaaaacactacaagaGATGCACCAAACATTTTCAACCTGCGAAGAATCTTCTAATGCCAAATGCATGACCAGTACCTTAAAGATATATCACATGACATATACAGAGTTTCTTCTACTAATATACAGATGCACAAGTGAAGGCTTCAGATTCATAAAGCGGGTGAAAAGAAAACACTAAACGTACATAAGCGGATTAAATAACTTTAACAGGAAGCGTTACTTGAAGACATCAAAGTGagagttcactcaaaaatgactgaaattgagttttggccataaaatcTAAGTCAGTGGGGTCTAATGATGTTTTGGACAACACTGACTTAAGTTAAATGGacttataaaaataagaaacgtGAGCGTGAGTAAATGCTCAGTGTTCgcatttgtgggtgaactgtgcctttaagacCCAATGTGCCAGACTAAATGGTGATTGTTGAAAATGTTACAGACTATATGTGCCTGAAAAagtcgttgttttttttttttaattacactttcAGTAGCCTTAGTTGAATAATTTTGTTTCCAAATAATGTCTATCTGGAGAAGTGTCTTAACCTGTGCTGCACAAATACATAAGCGCCTGACCTAACCGCTGTGAGGCATTTTTGCATTAAGTTTGATTGAGATGACCTGTTGAGatgttattttgaaagaaaaggagattcctttttttttgttttaagtactTAATACTTGTGTTCCATTCCTTTTTATAACTTTTTGATGACTTTGAGCCGAAATGAATAACGGTTTTGTTGAGCATTCCCAAGTTGCCTTGAAAATGTAAAGAagtaagttaaataaaaatgttcaggGAAGCAAATAAAAGGCTTCATGcta
>XR_006250745.1
ATGACGTCCCCCGAGCAGATCGTCGAGATCGTGATGGACGACAAAACGTACAACGTGAGTAAAAGCAAGCTGATCGAGAAGAGCGACTACTTCCGCGCGCTGTACAGCTCCGGGATGCGCGAGTCGGCGGAGGACTCGGTGCAGCTGCGGGGGCTGAGCGCGTCCGGGCTGGAGCTGGTGCTGGAGTTCATCAACACCTCCAAAGTTCAGGTGGCCAACGAGACTCTGGAGGACCTGATCGAGACCGCGTCCTTCCTGCAGGTCACGTCCATCTTAAAGCTGCTGCTGTCGGAGATCAAGCAGGAGAACTGCGTGGAGCTCTTCAAGCTCTCGGAGGTCTACGGGATGCACGACCTCAGGAAGGCTTGCTTGAAGTTCATGAGCTGCTATTATCACCCCGTGCTGCGCAGGCCGGAGTTCAGGATGCTGGCAGCTCCTCTGCGGGACCAGATCCGAGACACGCGCATGAAAGGCACGGCCGCTTTAGTCGCGATAGGGGACTTCACCGACACCTGTCTGGACCTGGCCAATCAGGACGAGCCTTGGTCTATGCTGAGGTACGACGAGCTGGAACAGCGCTGGAAACCTCTAGCCAACAATCTCCCCCAGGACATGATCAACGTCCGAGGGTACGGATCTGCTGTGCTGGACAACTACTTGTTCATTGTCGGTGGATACAGAATGACTAGTCAGGAGATCTCGGTGGCCCACTGCTACAACCCCTGCAGGAATGAGTGGAACCACGTGGCACCTTTGAACCAGAAGAGATCCAACTTCAAGCTCCTGGCCGTGAGTGGGAAGCTGTATGCAGTTGGAGGTCACTGTCTGAGCACGGTGGAGTGTTACAGTCCAGAGCAGGACTGGTGGACGTGTGTGGCGTCTCTGCCCGACCCGCTCGCTGAGTTCTCTGCCTGTGAGTGTCAGGGCATGATCTACGTCATGGGCGGTTATACCTCTAGAGATAGGAACACCAGCGTGCTGCGCTACTGCCCCGTCTCAGACACATGGTCCGTGTTCCGCTCCTGTTCGGCTCACGTGCGCAAGCAGCAGATGCTCTCCGTGGAGGACACCATCTATCTGGTGGGAGGTTACACGCACGAGCTAGACCCTGCAGAAATGGGCCGGCGGAGACTCGGCCAGACGGAGGACATGCTGACGGTACAGTCCTACAACGTGCAGACGGGGGAATGGTTGCAACTGAAGGAAAACACGTCAAAGTCTGGCTTGAACCTCACCTGCACGCTGCACAACGACGGCATCTACATTATGAGCAGAGACGTCAGCCTGCCCACCAGCCTGGAGCATCGCGTCTTCCTCAAGTACAACATTTTCTCAGACGCCTGGGAGGCCTTCAGACGCTTTCCTGCTCTGGGGCAGAACATGCTGCTTTGCTCTCTCTACCTACCCAGTGTCCTGTGAGCCACGCTGCTCGAGGTCTGGGGGAACGGGTTTTGTTGTAGCGAGCCTGGCCTGGTCAGAAGCGGCAGGCTTGCCAGAGGTTTATCCCAAAGCTTTACCGGATCGGATTGATCAAGCAACACAAAGAACATGCAGGatacattaaaggaataatatAGCCAAACAATTACAATTTGGTCATTATTCACTCCCCCTCAAACCGTGTGACTTTAGGAgtgactgcttttttttttttttttacgttcagCTTTGTGTTTCGCGGAAGGAAAAAGTCACATAGGTTTGAAACAACGCTTACGTACGAATGTTATTacttttttggttaaataaagGCCTTTGGATTATTAAAATCAGAAGGaaaaaagcaatagttcaccgaAAAAAGACAGTTTGCTTAAAACGTATTCACCTTCAGGCCACTCATCAGACAGAGATTCACTCgtcagtttgtttcttcatcagaacagattcagAGAAATGTATTCAGCGTTGTATCTCCTGTTTAACAGCGGATCCTTTGTGGTAAAGGGGAATGAGAgacagctaataaaaacattacaagaaTCCACAAGTAGTTCACACGCCTttagtccatcaattaacatctcaTGAAACTAAAAGCTTTGTgcttgtaataaacaaatccaccattaaaaacatttttactttaaactacAAGTCCATAATCCAAAACACTTCCTCCAGGGGATAAAGTTAATTCCATCTTGCCCTCTCacatcaaaacatatttaaacagtgcttgatctgcGCAGATTTCTCTTCCGATTCAGGCAAGATGGCTTTTTCGCTGGAAAAAGCAGTATTATAGATATAATAGATAGTCTTGATGCATTCGTTCattacaaacacagcttttgaTCACTTTACAAGATGTTggttgatggactggagtcgcatgtgatgcttttatcagtctcattctgacggcacccattcgctgcagagcaccCGTTGATGAGCAATGCAAAACCTTTCCAAGATCCCTTCTGATAAAGAAACTAAAATTCttttacatcttggatgacctgaggAGGAAGTCAAAGCGTAATCGGCTGTCCGTAGACATACTGCATCTTCCTATCAGATCAGCTGTGTCACTGCTGCTGCAAAGCGGCGGATGAACTCAGTGCCATTGAATCCGACCGTTGTCCACTCTCTGtccttcattcattttcttgGCACCTGCACCGATTCTATCCTGCGTCTCAAAGCGTGTGTATGTCCTGGAAGCACTCTTAATGTTGAGCTGATGTCCCAAAGACGAGCCGAGACGGCGAGgcagtggatggatggatggccaGTGCCAGTGActaatttattatacattatactgatagacatgcattttttttaaaagtagtaaGTGGCAccttttaatataaattctatgttttatttaaattttaaattaaatgaaattaagagACTCTTTACCTGATTTGTTTGAAGAacttttaattcatgttttatgcAGCAGGT

Function

symbol description
klhl42 Acts upstream of or within endocrine pancreas development; glucose homeostasis; and pancreas regeneration. Orthologous to human KLHL42 (kelch like family member 42).

NR:

description
kelch-like protein 42, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237672.1 True 3396 mRNA 0.45 3 9004819 9009304
XM_043237673.1 False 3348 mRNA 0.45 3 9004819 9009304
XR_006250745.1 False 2919 transcript 0.48 4 9004260 9009304

Neighbor

gene id symbol gene type direction distance location
nrip2 nrip2,LOC107725649,LOC107695877,LOC107588270,LOC107744921,LOC107664860,LOC107590947 coding downstream 3802 8977878 ~ 9000458 (-)
pah pah,LOC107695873,LOC107744915 coding downstream 119244 8874712 ~ 8885016 (-)
LOC122343226 parpbp,LOC107744914,LOC107659825,LOC107590919,LOC107593393,LOC107664835 coding downstream 147210 8843207 ~ 8857050 (-)
LOC122343383 LOC107659831,LOC107744910,LOC107664834 coding downstream 200420 8780290 ~ 8803840 (-)
sox5 sox5,LOC107590035,LOC107725540,LOC107744909,LOC107587062 coding downstream 251426 8579051 ~ 8752834 (-)
dram1 LOC107725538,LOC107591237,LOC107695863,LOC107664855,LOC107596679,LOC107744952 coding upstream 9026 9018330 ~ 9023432 (-)
chpt1 chpt1,LOC107590206,LOC107725616,LOC107695881,LOC107744925,LOC107664854,LOC107588513,LOC107085961 coding upstream 32709 9042013 ~ 9048831 (-)
mybpc1 mybpc1,LOC107695883 coding upstream 40217 9049521 ~ 9082049 (-)
spi2 LOC107590970,LOC107695852,LOC107725518,LOC108233215 coding upstream 77240 9086544 ~ 9088361 (-)
spic spic,LOC107695854,LOC107725559,LOC107590981,LOC107596776,LOC107744943,LOC107664892 coding upstream 80286 9089590 ~ 9092106 (-)
G27417 NA non-coding downstream 37 9003923 ~ 9004223 (-)
G27306 LOC107725624,LOC107744919,LOC107590167,LOC107587911,LOC107664885,LOC107695875 non-coding downstream 42827 8960446 ~ 8961433 (-)
G27279 NA non-coding downstream 116307 8887186 ~ 8887953 (-)
G27253 NA non-coding downstream 189248 8809767 ~ 8815012 (-)
G27257 NA non-coding downstream 195076 8805244 ~ 8809184 (-)
G27425 NA non-coding upstream 14573 9023877 ~ 9024077 (-)
LOC122343442 NA non-coding upstream 320703 9330007 ~ 9341739 (-)
G27469 NA non-coding upstream 489412 9498716 ~ 9504000 (-)
G27532 NA non-coding upstream 535904 9545208 ~ 9545421 (-)
LOC122342618 NA non-coding upstream 538335 9547639 ~ 9552161 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other downstream 62857 8892019 ~ 8941403 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other downstream 129662 8870215 ~ 8874598 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other downstream 486677 8513630 ~ 8517583 (-)
G27232 LOC107589947,LOC107725677,LOC107659846,LOC107586091,LOC107694692 other downstream 536232 8460506 ~ 8468028 (-)
LOC122343432 NA other downstream 754333 8247911 ~ 8249927 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other upstream 262668 9271972 ~ 9300179 (-)
zgc:193726 NA other upstream 1346407 10355711 ~ 10363566 (-)
cacna2d4a cacna2d4a,cacna2d4,LOC107694142,LOC107738821 other upstream 1475618 10484922 ~ 10522249 (-)
dcp1b dcp1b,LOC107590561,LOC107738825,LOC107733007,LOC107589040,LOC107699046,LOC107694173 other upstream 1515227 10524531 ~ 10533543 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other upstream 2405416 11414720 ~ 11573766 (-)

Expression


Co-expression Network