taf3 (taf3,LOC107555823,LOC107675973,LOC107578374)


Basic Information

Item Value
gene id taf3
gene name taf3,LOC107555823,LOC107675973,LOC107578374
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13102315 ~ 13144908 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237675.1
GTAGGTAAAGATGGCGGCTCCTATGGAAGCGCCAACGTCCCTATTCATGTGAATTACCAAAACAAAGCCTTTCCAGGCGCCGCGAGAGCGGGCTTTCGGGAGCGGAGATATGTGTGAGAGTTACGCGCGCTCGCTGCTGCGGGTCTCCGTGGCGCAGATGTGTCAGGCGGTGGGCTGGGACGCGGTGCAGCTGAGCGCCTGTGATCTGCTCTCCGACGTGCTGGAGAGATACTTGCAGCAGCTGGCCCGGAGCTGCCACCGATACTCCGAGCTCTATGGACGCACAGACCCTGGACTGAGCGACGTGGACCAGGCTTTCGGACTTTTGGGAGTCAGTATATCTGAACTCGAGGACTATGTAAATAACATGGAGCCTGTTGGCTTGCCGCAGACTATCCCTCAGTTTCCCATCAGCAAGAGCAGCGTTCTGCAGTTTCCCGCCGCTGGCTTTGAAACGGACGCCCGTGACGCCCTTAGGGGCGAGAGGAGAGACTATATCCCGGAGTACTTCCCTCCGCTCGTCTCACTGCAGGAAGatgaggaagaggaggagccgGTTCCTGCCGATATGGGCACATCTGCCGAAGCCATGCAGGTCTCCCTGGGTGAGGAAGAGGACGTTGAGGAAGAGGAGAACGATGAAAACTGGCTTAGTCGTCATGGCGGAGAGAGTCCCAGGCCTGAGGGTCTATTACCTGCTGCCAAGAGACCCCGTCTGAGCAGCAAACCCGGCGTCAGCCCCGAATGGAGTTACGAGCCACGGGAACCTCTCAGTTCCCTCAACTCTCAACACATGCCACATTCTCCCTCCCCTCCCCTTTCCCCCGAATTACCCCGACCTCCTTTGGCACCTCCTACACCTGGCCACAAGCCAAAATTGCCATCACCCTCTCCTGCACGACAGAAGAACAAATCTCCCAAAAGAGGTGCTGGATCTGCACCCACTGGTGTATTGGGGCGACCACTTATGTTGACCCCACCCAAGACCAATCAGAAGGCAGGAAAAAGGTCACCCGGTAGGCCCAAAAGCCCCCGCAGCCCAAGGCCAAACCCTGTCCTTTTGGGTGCAGCTGGACGTGGTTGGCCTGGACCACCTGCAGATGATTGTTCTCGTGATGGCCTGTTCAGAGGACAGGATACAGGAGAAGAGGATATTGAGAACTCTATTGCTGCTGTGATTGCACGGGCTTGTGCGGATGGAGATGGCACATCAGACCCCTTTGCTTACGACTCAGACTCAGACAGTGAGGGACCAAACCCTCCGAAACCTGCACCCAAACATATAATAAGCCACATCAAACCTCCACAAGCTCTTACCATAAAACACCCCCTTCCACCACTTCCCCCAAATCTTAACCCACCCAATCGCTGGACGATGGATGACTCTATAGACGAGGTCATCCGAAAGGCCAATCAGGCTCAAAAGCCAATTCAGGCCCCAAGTCTTTCCCCTCCAGAACCCACTTACCTGTCGTCCCCACCTGACTCACCTCCCACACCGCCTCCACCCCTAAAACCTCCCCAGGAACGGAAAGACCCTACTACCACTACCCTTCTGAAGAAAAAACTCAAGAAGGACATCAGGGTCAAGTTGAAGAAGAAAGACAAGGAGCGACTCAAGGAGAAGggcaaagagaaaggaaagaatAAGGACAAGAGCAAGGAAAAGAAGCGGGAAAAGGAGCGAGGGCAGGTAGAGGAGAACAAGATGCCCTGGCCAGAGCTATTGCTAGGAGGTGAGGAGCGCAGAGACGGCATTAGCGGGAAGAAAGAGAAGGACAAGCACAAGGACAAGAAGAAAGATAAAGAGAAAagcaagaaagagaaagagaaacgaGACAAGGGCAAGGAGCGAGGCAAGGAAGAGAAGAGGATATCTCAAGGAACCAAAGACATCGCCGCTGCTGTCTGCGCCACCAGCCCACTCTTTAGCCCCCAGACCTGCCTACGAGTCCCATCTATGCTGCCCCCATTGCCACCAATACTCCCTGATAAATTATTCCCACACCCCAAGGATACCAAGGGCAAAGACAAGGACAAGAAGAAGgacaagaaagagaagaagaagaaaaaagaaaaggagaaagacagagagaaggaACGGGAAAAGGAAAGGGAGAAGGAACGTGCGAGGGAGAAGGAGCGAGAtaaagaggagaagaagaaagacaaagagaagaaagaaaagacaaagGAAAAGGAGAAAGACAAGCCAAAACTTGAAAAATCAAGTTTATTGGCTGATATTCTTCCCGCTGTCCCACCGTCTCCCGTCATACCCCGACTGACCCTCAGAGTGGGCGCCGGACAAGACAAGATTGTGATCAGTAAGGTGGTCCCGGATTCGGAGCCCACCCCTCCACCCCCACGGACTCCGGTGGCCAGGCCCAGTCCAGCGGCGCGGATGCGCCCTCCCGCCCCACCCCCCCCGCCCGGCTCCGTCGCACCTCCACCCCGCCTCCGCCCGTCCTGCCCCTCCACCCCCAGCCGCCCCATCCAGCCTCCGCCCAGCCAGGCCAAAGCACGGGGATGCAGCGTCGTCACAGAGACCGTCAGTGCATACGTGATTCGGGATGAGTGGGGGAATCAGATCTGGATTTGTCCAGGATGTAATAAACCTGATGACGGCAGTCCCATGATCGGATGCGACGAGTGTGACGACTGGTATCACTGGCCCTGCGTGGGTCTCGTAGCCGCCCCTCCGGAGGACCAGTCGTGGTACTGTGTGAAATGCGCTGGCaagaagaaagacaagaagacaaaaaaaaggaaatgcaaagCGCACTGACccacatttctttttctctcgtCTCCGTCTTCATCTGTTTTCGCCTTAATTCatttccaacttttttttttttttctcatttgttctttttttttttttttttttttttccctcacccAGCCCTTCTTTTTAACTTGGTTAACTTAACTCAGTGTCCGGTatcataatgtattttttaaaaatgaaaatttcaaatgtgtatatgttacttttttatgtgGAGAATCGTATAGTATGTCTATATGATCTTTGTATGGAGCTCATGATTGTTCGGTAGATGTGTTGAAATGGACCTCTCGGTTTGCCCTCATTAAAGCTTGTTTCATGTATGTGCTGATTCATCAAATCTACTTCGCCCATGAGAAAAAGCATTCTGTACTATAATCTGCCTTTTAATATCATTCTTCTGATTGATTTCGACTGGAGGTGCAGTTTCATTTTACTGtggatttaattaaaagttgctTTTTCACATctta

Function

symbol description
taf3 Enables transcription cis-regulatory region binding activity. Acts upstream of or within hemopoiesis and regulation of muscle organ development. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF3 (TATA-box binding protein associated factor 3).

NR:

description
PREDICTED: transcription initiation factor TFIID subunit 3

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0005669 transcription factor TFIID complex cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14650 TAF3; transcription initiation factor TFIID subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237675.1 True 3267 mRNA 0.52 9 13102315 13144908

Neighbor

gene id symbol gene type direction distance location
gata3 gata3,LOC107555822,LOC107748455,LOC107675980 coding downstream 11480 13075216 ~ 13090835 (-)
celf2 celf2,LOC106927059,LOC108233267,LOC101484207,LOC107092344 coding downstream 430844 12539057 ~ 12671471 (-)
usp6nl usp6nl,LOC107669711,LOC107710686,LOC107572286 coding downstream 565989 12492354 ~ 12536326 (-)
LOC122343505 trhde,si:ch211-149p5.1,si:ch211-198g19.1,LOC107556776,LOC107666938,LOC107590972,LOC107710683,LOC107710667,LOC107669707 coding downstream 671429 12413786 ~ 12430886 (-)
LOC122343504 si:ch211-198g19.1,si:ch211-149p5.1,trhde,LOC107590972,LOC107556777,LOC107710683,LOC107556776 coding downstream 731145 12279641 ~ 12371170 (-)
atp5f1c atp5c1,LOC107728502,LOC107748457,LOC107555824 coding upstream 1746 13146654 ~ 13150706 (-)
itih2 itih2,LOC107555817,LOC107666937,LOC107748478 coding upstream 7513 13152421 ~ 13164123 (-)
pfkfb3 pfkfb3,LOC107555830,LOC107748462,LOC107663448 coding upstream 123167 13268075 ~ 13275474 (-)
rbm17 rbm17,LOC107755150,LOC107748463,LOC107663450 coding upstream 136275 13281183 ~ 13301329 (-)
ndufa12 ndufa12,LOC107667714,LOC107755161 coding upstream 228723 13373631 ~ 13375343 (-)
LOC122342546 NA non-coding downstream 30795 12988707 ~ 13071520 (-)
G28130 NA non-coding downstream 833575 12265665 ~ 12268740 (-)
LOC122342788 NA non-coding downstream 864178 12236645 ~ 12238137 (-)
G28117 NA non-coding downstream 947064 12148132 ~ 12155251 (-)
G28086 NA non-coding downstream 1083314 12018609 ~ 12019001 (-)
G28349 NA non-coding upstream 82792 13227700 ~ 13227947 (-)
G28350 NA non-coding upstream 84186 13229094 ~ 13229319 (-)
G28353 NA non-coding upstream 97598 13242506 ~ 13245388 (-)
G28359 NA non-coding upstream 105743 13250651 ~ 13252034 (-)
G28377 NA non-coding upstream 166965 13311873 ~ 13319748 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other downstream 613134 12465612 ~ 12489181 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other downstream 1086548 12014631 ~ 12015767 (-)
magi2a magi2a,LOC107680009,LOC107755877,LOC107591172,LOC107694149,LOC107590979 other downstream 1105676 11841965 ~ 11996639 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other downstream 1418453 11653470 ~ 11683862 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other downstream 1528549 11414720 ~ 11573766 (-)
tmem110l tmem110l,LOC107597025,LOC107748459,LOC107675974,LOC107555827,LOC107666935 other upstream 32053 13176961 ~ 13186890 (-)
tmcc3 tmcc3,LOC107689246,LOC107667715 other upstream 172024 13316932 ~ 13361938 (-)
G28397 vezt,metap2,metap2a,LOC107755144,LOC107689227,LOC107597031,LOC107667718,LOC107755160,LOC107689230,LOC107597011 other upstream 266716 13411624 ~ 13432703 (-)
LOC122343399 LOC107726825,LOC107689735,LOC107584742 other upstream 547563 13692471 ~ 13698715 (-)
LOC122343280 NA other upstream 670666 13815574 ~ 13831851 (-)

Expression


Co-expression Network