LOC122343294 (svopl,LOC107725968,LOC107658766,LOC107744112,LOC107656247)


Basic Information

Item Value
gene id LOC122343294
gene name svopl,LOC107725968,LOC107658766,LOC107744112,LOC107656247
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4889423 ~ 4894735 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237677.1
CCTGTCGGCAGGTATATGCGGGTGTTACTGCCGGAGAGGTTGATGATGCATCTTTCCAAAGGGAGTATTAACATCTATACAGAGACTGAAGTTGGATTTTAGGACATTCGTGATAGATACCGATTGGGTTTATAGTTTAAAAACCCGCCGGAGTTATTTTATCAGCTCTCTGCGAGACTGATTTGCATAAATCGCTGAAAGCTTTTTGGCACAACATACGGGAATTCTTGCGGGGGGAAGTACGGCATAACTAAAAAGTGTCCACCTGGATGGGACGCGATGGGAAAAGGGTCGACGTGACGGAGCATCGTGTTTGATTACCTCACTTCATCATCCGATGTTATATGCCTACTATTCAGGAAATAAGTAGACTTTTTAAACAGGATGGCATTAAAGCGCTCGTCTTCCATGAAGACCCAGCTGGTCAATGCCATCCAGCTTCAGGAAgtggagctggaggaggagatCAACACAAGTAGCAGTAATAGCACACATGCCGAAGCTGCTGAGGCCAAAGCCCAAACAGAACCAAAATGCTACACCGTGGAGGAGGCTGTGGAGAGCATTGGCTTCGGACGCTTCCACATATTGCTTTTTGTCATCATGGGTAGTGCCAATATAGTGGAGGCAATGGAGATCATGTTGTTGGCTGTGGTTTCTCCTGAGATCCGCTGCGAATGGCGTCTAGAGGATTGGCAGGTGGCCCTTGTCTCCACGATGGTGTTCCTCGGTTTCATGGTCTGTGGCGTCCTCTGTGGTTATGTTGCCGACAAATATGGACGTTGGAAGGTGGTGTTTGGAGGCTTTATATGGGCATCGTATTTTTCTCTGCTCACTTCATTCTCTCCATCGTATGGATGGTTCATCTTCCTGCGCTGTATGGTGGGCTGTGGTGTTGCAGCAACATCTCAAGGGTTTGTTTTGAAGACTGAATTCATCCCAGCCAAATACAGAGCTTTTCTGCTGCCTCTTGCCGCGGTCTTCTGGATGCTGGGTTCtatgcttattattattctcGGTATGACAGTGGTGCCTACAATGGGTTGGCGCTGGATGATCCGTTTTTCTATAATCCCCAGCATCATTCTCATTGGACTCTTCATGttTATTCCCGAGTCTGCACGGTTCCAGGTCTCAGCAGGCAATGTACAAGGAGCCATGTCAACACTTAACTGGATCGCGAGGATGAATGGCGCCTCCTTACCTGAAGGAGAACTACGGGAACCTGAAGTGTTAGAAAGAGGAAATGCCATCACTCTGATCAGCCCAGCTTTTAGAAGAACATCACTTTTGCTGTGGTACTCCTGGTTTGTGGCCTCCTTCTCCTATTATGGCTCGGTTCTGAGCGGCTCTGAGTTGCTGGAGAAGAATCTTCTATGTATGACGGACGCTGATCCAGAGCACCAGATCAAACACAACCAGGAGGAGGCGCTGTGTTACTGTATCCCGTTCAACATGGCTGATTACCAGACTCTcctcatcagctgtttgggcgAGGTGGCACTTATACCCCTTAATATTGGCCTGTTAAATATATTTGGACGGAAGCCCAGTTTGGCCATACTTCAGGTGTTGTCAGCCTTTTTCTTCATGATTGTTAATATTTGCACAACAATGATGGGTTTCACTATACTGCTCTTCCTTCTCCGCTCCGTGGTTTCTATGAATTTTAATGTCGTCTACATTTACACAGCAGAGGTTTATCCCACGGCCGTACGCTCAATTGGAATGGGCTTTTGCACATCCTTCAGTCGAGTCGGAGGAATGATCGCACCATTTATTGCACAGGTGTTAATGTCTAAGTCTGTGATTCTGGCCCTGTCGCCGTTTGCCTTGGCGTGTGTGATTTGTGCGGTGGGAGTGTTGTTTTTGCCCATTGAGACCAGAGGACGTGCGTTACTACAAGACGCCTGAAATACAATGGAGAAATGAAGAGCAATTGCACTTTTGTAACAAAACATCTCATATTAAAGCTGGAAggattttctattatttttaa
>XM_043237678.1
CCTGTCGGCAGGTATATGCGGGTGTTACTGCCGGAGAGGTTGATGATGCATCTTTCCAAAGGGAGTATTAACATCTATACAGAGACTGAAGTTGGATTTTAGGACATTCGTGATAGATACCGATTGGGTTTATAGTTTAAAAACCCGCCGGAGTTATTTTATCAGCTCTCTGCGAGACTGATTTGCATAAATCGCTGAAAGCTTTTTGGCACAACATACGGGAATTCTTGCGGGGGGAAGTACGGCATAACTAAAAAGTGTCCACCTGGATGGGACGCGATGGGAAAAGGGTCGACGTGACGGAGCATCGTGTTTGATTACCTCACTTCATCATCCGATGTTATATGCCTACTATTCAGGAAATAAGTAGACTTTTTAAACAGGATGGCATTAAAGCGCTCGTCTTCCATGAAGACCCAGCTGGTCAATGCCATCCAGCTTCAGGAAgtggagctggaggaggagatCAACACAAGTAGCAGTAATAGCACACATGCCGAAGCTGCTGAGGCCAAAGAACCAAAATGCTACACCGTGGAGGAGGCTGTGGAGAGCATTGGCTTCGGACGCTTCCACATATTGCTTTTTGTCATCATGGGTAGTGCCAATATAGTGGAGGCAATGGAGATCATGTTGTTGGCTGTGGTTTCTCCTGAGATCCGCTGCGAATGGCGTCTAGAGGATTGGCAGGTGGCCCTTGTCTCCACGATGGTGTTCCTCGGTTTCATGGTCTGTGGCGTCCTCTGTGGTTATGTTGCCGACAAATATGGACGTTGGAAGGTGGTGTTTGGAGGCTTTATATGGGCATCGTATTTTTCTCTGCTCACTTCATTCTCTCCATCGTATGGATGGTTCATCTTCCTGCGCTGTATGGTGGGCTGTGGTGTTGCAGCAACATCTCAAGGGTTTGTTTTGAAGACTGAATTCATCCCAGCCAAATACAGAGCTTTTCTGCTGCCTCTTGCCGCGGTCTTCTGGATGCTGGGTTCtatgcttattattattctcGGTATGACAGTGGTGCCTACAATGGGTTGGCGCTGGATGATCCGTTTTTCTATAATCCCCAGCATCATTCTCATTGGACTCTTCATGttTATTCCCGAGTCTGCACGGTTCCAGGTCTCAGCAGGCAATGTACAAGGAGCCATGTCAACACTTAACTGGATCGCGAGGATGAATGGCGCCTCCTTACCTGAAGGAGAACTACGGGAACCTGAAGTGTTAGAAAGAGGAAATGCCATCACTCTGATCAGCCCAGCTTTTAGAAGAACATCACTTTTGCTGTGGTACTCCTGGTTTGTGGCCTCCTTCTCCTATTATGGCTCGGTTCTGAGCGGCTCTGAGTTGCTGGAGAAGAATCTTCTATGTATGACGGACGCTGATCCAGAGCACCAGATCAAACACAACCAGGAGGAGGCGCTGTGTTACTGTATCCCGTTCAACATGGCTGATTACCAGACTCTcctcatcagctgtttgggcgAGGTGGCACTTATACCCCTTAATATTGGCCTGTTAAATATATTTGGACGGAAGCCCAGTTTGGCCATACTTCAGGTGTTGTCAGCCTTTTTCTTCATGATTGTTAATATTTGCACAACAATGATGGGTTTCACTATACTGCTCTTCCTTCTCCGCTCCGTGGTTTCTATGAATTTTAATGTCGTCTACATTTACACAGCAGAGGTTTATCCCACGGCCGTACGCTCAATTGGAATGGGCTTTTGCACATCCTTCAGTCGAGTCGGAGGAATGATCGCACCATTTATTGCACAGGTGTTAATGTCTAAGTCTGTGATTCTGGCCCTGTCGCCGTTTGCCTTGGCGTGTGTGATTTGTGCGGTGGGAGTGTTGTTTTTGCCCATTGAGACCAGAGGACGTGCGTTACTACAAGACGCCTGAAATACAATGGAGAAATGAAGAGCAATTGCACTTTTGTAACAAAACATCTCATATTAAAGCTGGAAggattttctattatttttaa

Function

symbol description
svopl Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in hatching gland; myotome; pectoral fin musculature; polster; and somite. Orthologous to human SVOPL (SVOP like).

NR:

description
PREDICTED: putative transporter SVOPL

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237677.1 True 1999 mRNA 0.47 16 4889423 4894735
XM_043237678.1 False 1990 mRNA 0.47 16 4889423 4894735

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-27e10.3 si:dkeyp-27e10.3,LOC107726043,LOC107743425,LOC107656289,LOC107580867,LOC107592246 coding upstream 810 4868022 ~ 4888613 (+)
parp12b parp12b,LOC107726044,LOC107592257,LOC107743438,LOC107658812,LOC107656291,LOC107581297 coding upstream 22241 4861328 ~ 4867182 (+)
ttc41 LOC107656216,LOC107743954,LOC107581281 coding upstream 28275 4854065 ~ 4861148 (+)
glt8d2 glt8d2 coding upstream 41679 4841693 ~ 4847744 (+)
fbxo18 LOC107743400,LOC107658809,LOC107656287,LOC107581284 coding upstream 48818 4832410 ~ 4840605 (+)
LOC122343293 LOC107658814,LOC107726023,LOC107592209,LOC107656292 coding downstream 147 4894882 ~ 4928702 (+)
dmtf1 dmtf1,LOC107658823,LOC107726036,LOC107743449,LOC107656295,LOC107580832 coding downstream 63941 4958676 ~ 4965197 (+)
syt10 syt10,LOC107744086,LOC107658793,LOC107656242,LOC107745011,LOC107565666,LOC107592193 coding downstream 159055 5053790 ~ 5068865 (+)
ccdc59 LOC107548114,LOC107739147,LOC107656276,LOC107745010 coding downstream 276015 5170750 ~ 5172410 (+)
cracr2ab cracr2ab,LOC107690648,LOC107742178,LOC107560738 coding downstream 321724 5216459 ~ 5224944 (+)
G26008 NA non-coding upstream 121602 4765864 ~ 4767821 (+)
G25976 LOC107743325,LOC107658806,LOC107580925 non-coding upstream 145820 4730837 ~ 4743603 (+)
G25981 flncb,LOC107592205 non-coding upstream 198640 4689375 ~ 4690783 (+)
G25941 NA non-coding upstream 453786 4432605 ~ 4435637 (+)
G25940 NA non-coding upstream 457465 4431623 ~ 4431958 (+)
G26043 NA non-coding downstream 86474 4981209 ~ 4994260 (+)
LOC122343429 NA non-coding downstream 88486 4983221 ~ 4985211 (+)
LOC122342533 NA non-coding downstream 91444 4986179 ~ 4988188 (+)
LOC122342534 NA non-coding downstream 94432 4989167 ~ 4991312 (+)
LOC122343284 NA non-coding downstream 97339 4992074 ~ 4994254 (+)
G25958 NA other upstream 260524 4550163 ~ 4628899 (+)
G25838 si:dkey-153k10.9,LOC100147981,LOC107743973,LOC107656294,LOC107725885,LOC107592247 other upstream 654179 4232908 ~ 4235244 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other upstream 658331 4229629 ~ 4231092 (+)
G25551 NA other upstream 1150829 3737502 ~ 3738594 (+)
G25514 NA other upstream 1387329 3481629 ~ 3502094 (+)
LOC122343397 LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166 other downstream 34736 4929471 ~ 4944880 (+)
pcloa pcloa,LOC107757237,LOC107694308,LOC107577557,LOC107560734 other downstream 459597 5354332 ~ 5397886 (+)
LOC122342465 LOC107560737,LOC107742176,LOC107757234,LOC107690649,LOC107589816,LOC107694311,LOC107673148,LOC107559271,LOC107738440,LOC107670367,LOC556054,LOC108414180 other downstream 887209 5781944 ~ 5862313 (+)
LOC122342837 grm4,LOC107549321,LOC107716363,LOC107708172,LOC107569297,LOC107666973,LOC107678149 other downstream 967872 5862607 ~ 5898827 (+)
vhll NA other downstream 1493808 6388543 ~ 6390927 (+)

Expression


Co-expression Network