phyh (phyh,LOC107743808)


Basic Information

Item Value
gene id phyh
gene name phyh,LOC107743808
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2916161 ~ 2920243 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237682.1
GAGTGTCGCTGCACTTTACCCCAGTTATATAAACGTATAAACGCATACAGCGCTCCAGCGGTTCATCTCGTCGGCTCTGTGCAGGATTCAAGATGTCCCGGGCGGCAGACAGATTGAAAGTGGTTTTGAATCACCTCGACCGCTCCCACGGTGCTGTCAGAGCATCCTTCACTTCTGCACAAAGCGTGTCGTACCACCATCCTCAGGTCCTACAATACACTTTTGACACCGGTGTCCTGACTCCAGAACAGAGAATTGCTTATGAAGAGAATGGTTTCATACTCATCCGAAAATTGGTATCGGAAGACGATATTGAGAGATTCAGGAATGAGTTTGAGCGCATCTGTAAAAGAGAGGTGAAGGTGCCTGGTTTGGTGGTCATGAGAGATGTTACCATTGCTAAATCAGAGTATATTGAAGGTGAGAAGGCTGTGACCAAACTTCAGGACTACCAGGAAGATCCAGAACTGTTCCGCTACTGCACTTTACCACAGATCCTGAAGTATGTGCAAAGTTTCACCGGACCCAACATTATGGCCATGCACACCATGCTCATCAACAAACCACCTGACACGGGTAAGAAGACCTCTCGCCATCCTATGCACCAGGACCTACACTACTTCCCCTTCCGCCCTGCAGACCGTATTGTGTGTTCGTGGACCGCCATGGAGAAAGTGCACCGGGGAAATGGCTGCCTGGTTGTCCTGCCCGGCTCTCACCATGGCACTCTGCTGGAGCATGACTACCCAGAATGGGAGGGTGGAGTAAATAAGATGTACCACGGGCTGCGTAACTATGACCCAAACCACCCCAGAGTCCATTTAGAGATGGAGAAAGGAGATACCGTGTTTTTCCACCCTTTGCTGATCCACGGCTCCGGAATGAACCAAACCGATGGATTTCGAAAGGCCATCTCCTGTCACTACGCCAGTTCTGACTGCTATTACATTGATGTGAAAGGAACCACTCAGGAGAACATCAGCAATGAAGTGAAAGAGCTTGCAGCCAAGAAGTATGGAGTTGACGATACGGTTACCTTTCAGGACACCTGGGCTTTGCGGGGACGTCTGGTCCAAGGAGACAGGACATCGATGTGATTGCAGTGCTTATCTGTCTGCTTAGAAAGAGGATGGCTTAACAACTGGAATAATTAACAGCACACAGCTGTTTGTTAATCATCTAACAATCTCCTTAAAAGCTGAGAACTAAAAGTACAAACTTTGGCCATCAGGTGGCGCTGTAGGGAATAAATCACGGGGCGCATTTAGTGAATTGCCATCTGTGCCTGGGACAAGCAGTCCCGATaccaatataatattaatgaaagccAGACATTGTAATATTATCATTAACGGATCTCGGTGtggaatttttttaagcattgcaAGAACATTGGGAATTTATCGTCTTGGACCGGTACTTCAGGTCGTTCGTGAGAGTGTTTCCTGCAAGGAATTAGTGAGATTATTGCTTAGGGTGAAATACTTTGATCAGAGCTTGAGTTCACAGCGGACACTTGGGAAGATTATTGGGAAGATAATTGAGTACAGCATTCAATCGGCCTCCACTTGAAATGTCTAAGATAGCTTTGTGCCGTAGGACATGATGGTTTTGAAAGAATCAGAAGCAAAGCAATAAGAGGAAGATGTATTTTATGGTTAATTCTGGAAtattaaatggattaaatgTTGGATCAACATTAGATCAGGTCTATATGTGCCTATTAAACTTATTAAACACACTGCTCTTggacaaaatgtaataaaactaatgaaagtTTATATCATATAATTTTGCTTAAtagcaaataaacatttattttaaactaa

Function

symbol description
phyh Predicted to enable phytanoyl-CoA dioxygenase activity. Predicted to be involved in fatty acid alpha-oxidation. Is expressed in intestinal bulb and liver. Human ortholog(s) of this gene implicated in Refsum disease; Zellweger syndrome; orofacial cleft; and peroxisomal disease. Orthologous to human PHYH (phytanoyl-CoA 2-hydroxylase).

NR:

description
PREDICTED: phytanoyl-CoA dioxygenase, peroxisomal

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0051213 dioxygenase activity molecular_function

KEGG:

id description
K00477 PHYH; phytanoyl-CoA hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237682.1 True 1829 mRNA 0.44 9 2916161 2920243

Neighbor

gene id symbol gene type direction distance location
LOC122342536 NA coding upstream 2682 2912178 ~ 2913479 (+)
si:ch1073-67j19.1 LOC107725978,LOC107743829,LOC107580374 coding upstream 7466 2907459 ~ 2908695 (+)
elk3 elk3,LOC107743764 coding upstream 53772 2847274 ~ 2862389 (+)
mdfic mdfic,si:ch211-262n1.4,LOC107658868,LOC107656347,LOC107580133,LOC107584008 coding upstream 274324 2622539 ~ 2641837 (+)
foxp2 foxp2 coding upstream 313660 2505946 ~ 2602501 (+)
ucmaa ucmaa,ucma,LOC107658769,LOC107581267,LOC107656340 coding downstream 2978 2923221 ~ 2927098 (+)
cdc123 cdc123,LOC107658858,LOC107726014,LOC107656335 coding downstream 17829 2938072 ~ 2941597 (+)
camk1da camk1da,LOC107726013,LOC107743755,LOC107658855,LOC108428135,LOC108279878,LOC107656221 coding downstream 23681 2943924 ~ 2994499 (+)
optn optn,LOC107726056,LOC107658854,LOC107656330,LOC107743880,LOC107580275 coding downstream 86630 3006873 ~ 3012104 (+)
LOC122342760 wnt5b,LOC107656325,LOC107572035,LOC107726030,LOC107658849,LOC107580320 coding downstream 391410 3311653 ~ 3381172 (+)
LOC122343411 NA non-coding upstream 90372 2790078 ~ 2825789 (+)
LOC122343412 NA non-coding upstream 128504 2726802 ~ 2787657 (+)
LOC122342395 NA non-coding upstream 196800 2686424 ~ 2719361 (+)
LOC122342427 NA non-coding upstream 236418 2666342 ~ 2679743 (+)
LOC122342588 NA non-coding upstream 253116 2662114 ~ 2663045 (+)
G25453 NA non-coding downstream 10865 2931108 ~ 2931859 (+)
G25455 wnk1,wnk1b,LOC107725976,LOC107658853 non-coding downstream 14919 2935162 ~ 3030892 (+)
G25456 NA non-coding downstream 97324 3017567 ~ 3024764 (+)
G25502 LOC107573038 non-coding downstream 488758 3409001 ~ 3434462 (+)
G25504 NA non-coding downstream 500393 3420636 ~ 3429146 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 920625 1994240 ~ 1995536 (+)
LOC122342451 NA other upstream 1128065 1784237 ~ 1788096 (+)
LOC122343488 NA other upstream 1243202 1670512 ~ 1672959 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 1584318 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 1624937 1288297 ~ 1291224 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 179494 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 199272 3119515 ~ 3306758 (+)
G25514 NA other downstream 561386 3481629 ~ 3502094 (+)
G25551 NA other downstream 817259 3737502 ~ 3738594 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 1309386 4229629 ~ 4231092 (+)

Expression


Co-expression Network