celf6 (celf6,LOC106535005)


Basic Information

Item Value
gene id celf6
gene name celf6,LOC106535005
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28421249 ~ 28537332 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237683.1
GCAGCTGACACGCGGCGAGAGAGACGCAGATGGAGAAAGTGAAAGAATCCTGAGGAGAAGAAACCCAGAGGAGCGACCAgcagagacagagggagaagaggaggaagaaagagagagagaggaggaggagtggATGGTAGAGAGCCGGAGACGCGGCGCGCCGGAGGGAGAAAGATGGCCTCGGTAACGGCGGAGAATGGCTTCAGCACCGCGAACAGCTCCGGTAGAATGAACGGACTCAACAGCGCGATTCCCATGAAAGATCACGACGCCATCAAGCTCTTCGTCGGCCAGATCCCGCGCAACCTGGAGGAGAAAGACCTCAAGCCTCTGTTCGAGGAGTTCGGGAAGATCTACGAGCTCACGGTGCTCAAGGACCGGTTCACCGGGATGCATAAAGgatgTGCCTTTCTAACGTACTGTGCCAGAGAGTCGGCGCTGAAGGCCCAGAGCGCTCTCCACGAACAAAAGACTCTTCCCGGGATGAACCGGCCCATCCAGGTGAAACCGGCCGACAGTGAAGGACGAGGAGaAGACCGGAAGCTGTTTGTGGGCATGCTGGGGAAGCAGCAGAGCGAAGACGACGTTCGGCGGCTCTTCGATTCGTTCGGGCAGATCGAGGAGTGCACCGTCCTGCGGGGGCCTGATGGGGCCAGTAAGGGCTGTGCTTTTGTGAAGTTTTCCAGTCATGCTGAAGCCCAGGCGGCGATTAACAGTCTCCACGGAGGACAGACGATGATGccgggtgCGTCCTCCAGTCTGGTGGTGAAGTTTGCAGACACTGATAAGGAGCGGACGCTGCGCCGGATGCATCAGATGGCCGGTCAGCTCGGGATCTTCAGTCCTATGACCATCCAGTTTGGAGCGTACGGAGCTTACACACACGCTatCCTCCAGCAGCAGCAGGCAGCGATCATGGCAGCGACGCAGGGCTCGTATCTCAACCCCATGGCAGCCATCGCCGCCGCTCAGATGCAGCAGATAGCAGCTTTCAACGTCAACGGCCTGGTGGCTGCACCCATGACACCTTcttcagGCACCAGCACTCCCCCCGGCATCAGCGGCACCGCCGTGCCCAGCATCGCTGCTCCGCTCGGGGTCAACGGCTTCAGCGCTCTGCCTCCTCAGACCAACGGACAGCCTGCCTCCGAAGCCATCTACACCAACGGCATCCACCCGTACCCAGcacaGAGTCCGACGGTGGCTGATCCTCTCCAGCAGGCGTACGCCGGAGTGCAGCACTATGCAGCAGCCTATCCTGCCGCTTATGCACCAATCAGCCAAGCGTTTCCGCAGCAACCAGCCATCATCCCCCAGCAACAGCGGGAAGgacCGGAGGGCTGTAATCTGTTCATTTATCACCTGCCGCAGGAGTTTGGAGACGCCGAGCTCATGCAGATGTTTCTGCCGTTTGGTAACGTAATTTCCGCCAAAGTCTTCGTGGACCGGGCGACCAATCAGAGCAAGTGTTTCGGATTCGTCAGCTTTGATAACCCGTCCAGCGCTCAGGCAGCCATCCAGGCCATGAACGGCTTTCAGATCGGCATGAAGAGGCTCAAAGTCCAGCTGAAGCGGCCCAAGGACGCCAACCGGCCGTACTGACCCTGACTGACCCTGACTGACCCCTGCTCCTTCACTCACAGGTCTGTCCAGACGCTCTTCAACAGCTTTAGTGCTTTAAATAAAGGGTTCAAATGATTAGTGCAAATGAGCTTAATTGCTGTCTGcattaaagcatatatatatacagtatatgttaaCATAAAGACATGACAGATTTCTGGGTGTCTGGTATTGATATATGAATCCTTTTATATTCAGTTTGGTTACAAGTTAGTTACAAATACGTTTCTAACTGATACAAAAATGCGATGAAATGTGTTACAAAAAAGTAACTGCGttccatttagattttttgtatcTCTGTATTCCTATCAGTGTTCTTTAaggcttgtttttgttgtttttatgcataaaagtaAGCCTTGGATGTGATTCAAGCCGACCATGAAAAGGATCTTTGACACACGGTTTCCAccagaaaataaaatcaaatagtTATTGATTATCTAAAGGGTTACTCTCTCGTCTGGAAAAGATTGGGGGTTAAACTCGGGATAAAACTAAAGATTGCTTTCATTTTCAGGAACTGATGATGAATTGCTGAAAGGTGTGCTAGATCTTCAGCACGATTAGTCTTGATTCTCTCACTTCTTTCTGAACAATATTCATACTAAACTGTTATATCCACAGCTGTCAAGCTCTAAAAAAGGaccaaaatatgtatatatattgagaacgagcatcatttttaattcttcagtatttgattttactttgct
>XM_043237684.1
GCAGCTGACACGCGGCGAGAGAGACGCAGATGGAGAAAGTGAAAGAATCCTGAGGAGAAGAAACCCAGAGGAGCGACCAgcagagacagagggagaagaggaggaagaaagagagagagaggaggaggagtggATGGTAGAGAGCCGGAGACGCGGCGCGCCGGAGGGAGAAAGATGGCCTCGGTAACGGCGGAGAATGGCTTCAGCACCGCGAACAGCTCCGGTAGAATGAACGGACTCAACAGCGCGATTCCCATGAAAGATCACGACGCCATCAAGCTCTTCGTCGGCCAGATCCCGCGCAACCTGGAGGAGAAAGACCTCAAGCCTCTGTTCGAGGAGTTCGGGAAGATCTACGAGCTCACGGTGCTCAAGGACCGGTTCACCGGGATGCATAAAGgatgTGCCTTTCTAACGTACTGTGCCAGAGAGTCGGCGCTGAAGGCCCAGAGCGCTCTCCACGAACAAAAGACTCTTCCCGGGATGAACCGGCCCATCCAGGTGAAACCGGCCGACAGTGAAGGACGAGGAGaAGACCGGAAGCTGTTTGTGGGCATGCTGGGGAAGCAGCAGAGCGAAGACGACGTTCGGCGGCTCTTCGATTCGTTCGGGCAGATCGAGGAGTGCACCGTCCTGCGGGGGCCTGATGGGGCCAGTAAGGGCTGTGCTTTTGTGAAGTTTTCCAGTCATGCTGAAGCCCAGGCGGCGATTAACAGTCTCCACGGAGGACAGACGATGATGccgggtgCGTCCTCCAGTCTGGTGGTGAAGTTTGCAGACACTGATAAGGAGCGGACGCTGCGCCGGATGCATCAGATGGCCGGTCAGCTCGGGATCTTCAGTCCTATGACCATCCAGTTTGGAGCGTACGGAGCTTACACACACGCTatCCTCCAGCAGCAGCAGGCAGCGATCATGGCAGCGACGCAGGGCTCGTATCTCAACCCCATGGCAGCCATCGCCGCCGCTCAGATGCAGCAGATAGCAGCTTTCAACGTCAACGGCCTGGTGGCTGCACCCATGACACCTTcttcagGCACCAGCACTCCCCCCGGCATCAGCGGCACCGCCGTGCCCAGCATCGCTGCTCCGCTCGGGGTCAACGGCTTCAGCGCTCTGCCTCCTCAGACCAACGGACAGCCTGCCTCCGAAGCCATCTACACCAACGGCATCCACCCGTACCCAGcacaGAGTCCGACGGTGGCTGATCCTCTCCAGCAGGCGTACGCCGGAGTGCAGCACTATGCAGCCTATCCTGCCGCTTATGCACCAATCAGCCAAGCGTTTCCGCAGCAACCAGCCATCATCCCCCAGCAACAGCGGGAAGgacCGGAGGGCTGTAATCTGTTCATTTATCACCTGCCGCAGGAGTTTGGAGACGCCGAGCTCATGCAGATGTTTCTGCCGTTTGGTAACGTAATTTCCGCCAAAGTCTTCGTGGACCGGGCGACCAATCAGAGCAAGTGTTTCGGATTCGTCAGCTTTGATAACCCGTCCAGCGCTCAGGCAGCCATCCAGGCCATGAACGGCTTTCAGATCGGCATGAAGAGGCTCAAAGTCCAGCTGAAGCGGCCCAAGGACGCCAACCGGCCGTACTGACCCTGACTGACCCTGACTGACCCCTGCTCCTTCACTCACAGGTCTGTCCAGACGCTCTTCAACAGCTTTAGTGCTTTAAATAAAGGGTTCAAATGATTAGTGCAAATGAGCTTAATTGCTGTCTGcattaaagcatatatatatacagtatatgttaaCATAAAGACATGACAGATTTCTGGGTGTCTGGTATTGATATATGAATCCTTTTATATTCAGTTTGGTTACAAGTTAGTTACAAATACGTTTCTAACTGATACAAAAATGCGATGAAATGTGTTACAAAAAAGTAACTGCGttccatttagattttttgtatcTCTGTATTCCTATCAGTGTTCTTTAaggcttgtttttgttgtttttatgcataaaagtaAGCCTTGGATGTGATTCAAGCCGACCATGAAAAGGATCTTTGACACACGGTTTCCAccagaaaataaaatcaaatagtTATTGATTATCTAAAGGGTTACTCTCTCGTCTGGAAAAGATTGGGGGTTAAACTCGGGATAAAACTAAAGATTGCTTTCATTTTCAGGAACTGATGATGAATTGCTGAAAGGTGTGCTAGATCTTCAGCACGATTAGTCTTGATTCTCTCACTTCTTTCTGAACAATATTCATACTAAACTGTTATATCCACAGCTGTCAAGCTCTAAAAAAGGaccaaaatatgtatatatattgagaacgagcatcatttttaattcttcagtatttgattttactttgct
>XM_043237685.1
GCAGCTGACACGCGGCGAGAGAGACGCAGATGGAGAAAGTGAAAGAATCCTGAGGAGAAGAAACCCAGAGGAGCGACCAgcagagacagagggagaagaggaggaagaaagagagagagaggaggaggagtggATGGTAGAGAGCCGGAGACGCGGCGCGCCGGAGGGAGAAAGATGGCCTCGGTAACGGCGGAGAATGGCTTCAGCACCGCGAACAGCTCCGGTAGAATGAACGGACTCAACAGCGCGATTCCCATGAAAGATCACGACGCCATCAAGCTCTTCGTCGGCCAGATCCCGCGCAACCTGGAGGAGAAAGACCTCAAGCCTCTGTTCGAGGAGTTCGGGAAGATCTACGAGCTCACGGTGCTCAAGGACCGGTTCACCGGGATGCATAAAGgatgTGCCTTTCTAACGTACTGTGCCAGAGAGTCGGCGCTGAAGGCCCAGAGCGCTCTCCACGAACAAAAGACTCTTCCCGGGATGAACCGGCCCATCCAGGTGAAACCGGCCGACAGTGAAGGACGAGGAGaAGACCGGAAGCTGTTTGTGGGCATGCTGGGGAAGCAGCAGAGCGAAGACGACGTTCGGCGGCTCTTCGATTCGTTCGGGCAGATCGAGGAGTGCACCGTCCTGCGGGGGCCTGATGGGGCCAGTAAGGGCTGTGCTTTTGTGAAGTTTTCCAGTCATGCTGAAGCCCAGGCGGCGATTAACAGTCTCCACGGAGGACAGACGATGATGccgggtgCGTCCTCCAGTCTGGTGGTGAAGTTTGCAGACACTGATAAGGAGCGGACGCTGCGCCGGATGCATCAGATGGCCGGTCAGCTCGGGATCTTCAGTCCTATGACCATCCAGTTTGGAGCGTACGGAGCTTACACACACGCTcagatCCTCCAGCAGCAGCAGGCAGCGATCATGGCAGCGACGCAGGGCTCGTATCTCAACCCCATGGCAGCCATCGCCGCCGCTCAGATGCAGCAGATAGCAGCTTTCAACGTCAACGGCCTGGTGGCTGCACCCATGACACCTTcttcagGCACCAGCACTCCCCCCGGCATCAGCGGCACCGCCGTGCCCAGCATCGCTGCTCCGCTCGGGGTCAACGGCTTCAGCGCTCTGCCTCCTCAGACCAACGGACAGCCTGCCTCCGAAGCCATCTACACCAACGGCATCCACCCGTACCCAGcacaGAGTCCGACGGTGGCTGATCCTCTCCAGCAGGCGTACGCCGGAGTGCAGCACTATGCAGCAGCCTATCCTGCCGCTTATGCACCAATCAGCCAAGCGTTTCCGCAGCAACCAGCCATCATCCCCCAGCAACAGCGGGAAGgacCGGAGGGCTGTAATCTGTTCATTTATCACCTGCCGCAGGAGTTTGGAGACGCCGAGCTCATGCAGATGTTTCTGCCGTTTGGTAACGTAATTTCCGCCAAAGTCTTCGTGGACCGGGCGACCAATCAGAGCAAGTGTTTCGGATTCGTCAGCTTTGATAACCCGTCCAGCGCTCAGGCAGCCATCCAGGCCATGAACGGCTTTCAGATCGGCATGAAGAGGCTCAAAGTCCAGCTGAAGCGGCCCAAGGACGCCAACCGGCCGTACTGACCCTGACTGACCCTGACTGACCCCTGCTCCTTCACTCACAGGTCTGTCCAGACGCTCTTCAACAGCTTTAGTGCTTTAAATAAAGGGTTCAAATGATTAGTGCAAATGAGCTTAATTGCTGTCTGcattaaagcatatatatatacagtatatgttaaCATAAAGACATGACAGATTTCTGGGTGTCTGGTATTGATATATGAATCCTTTTATATTCAGTTTGGTTACAAGTTAGTTACAAATACGTTTCTAACTGATACAAAAATGCGATGAAATGTGTTACAAAAAAGTAACTGCGttccatttagattttttgtatcTCTGTATTCCTATCAGTGTTCTTTAaggcttgtttttgttgtttttatgcataaaagtaAGCCTTGGATGTGATTCAAGCCGACCATGAAAAGGATCTTTGACACACGGTTTCCAccagaaaataaaatcaaatagtTATTGATTATCTAAAGGGTTACTCTCTCGTCTGGAAAAGATTGGGGGTTAAACTCGGGATAAAACTAAAGATTGCTTTCATTTTCAGGAACTGATGATGAATTGCTGAAAGGTGTGCTAGATCTTCAGCACGATTAGTCTTGATTCTCTCACTTCTTTCTGAACAATATTCATACTAAACTGTTATATCCACAGCTGTCAAGCTCTAAAAAAGGaccaaaatatgtatatatattgagaacgagcatcatttttaattcttcagtatttgattttactttgc

Function

symbol description
celf6 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CELF6 (CUGBP Elav-like family member 6).

NR:

description
CUGBP Elav-like family member 3-B isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13207 CUGBP, BRUNOL, CELF; CUG-BP- and ETR3-like factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237683.1 False 2342 mRNA 0.51 12 28421249 28537332
XM_043237684.1 False 2339 mRNA 0.51 12 28421249 28537332
XM_043237685.1 True 2344 mRNA 0.51 12 28421249 28537331

Neighbor

gene id symbol gene type direction distance location
LOC122343436 parp6,LOC107668484,LOC107665100,LOC106587213 coding upstream 10939 28387507 ~ 28410310 (+)
dhdh.2 zgc:101723,LOC107665090,LOC107712874 coding upstream 53771 28360946 ~ 28367478 (+)
dhdh.1 LOC107665437,LOC107668471,LOC107709394,LOC107553352 coding upstream 61007 28354430 ~ 28360242 (+)
LOC122342376 LOC107694127,LOC107717944,LOC107590657,LOC107752637,LOC107552269 coding upstream 220238 28197236 ~ 28201011 (+)
LOC122342444 krt1-19d,LOC107665143,LOC107666326,LOC107753925,LOC107563035 coding upstream 311202 28106617 ~ 28110047 (+)
LOC122342381 LOC107665446,LOC107595396,LOC107713214,LOC107553351,LOC107753194,LOC107676404 coding downstream 56545 28593877 ~ 28594995 (+)
LOC122342385 LOC107749047,LOC107728228,LOC107574018,LOC107722090,LOC107685875,LOC107553362,LOC107569032,LOC107669894 coding downstream 432919 28970251 ~ 28993117 (+)
LOC122342705 NA non-coding upstream 35295 28380612 ~ 28385954 (+)
G31551 LOC107709388,LOC107595343,LOC107712845,LOC107668482,LOC107553360 non-coding upstream 45462 28372385 ~ 28375787 (+)
G31631 myo7aa,LOC107660700,LOC106612882,LOC106581013 non-coding upstream 150665 28270102 ~ 28270584 (+)
G31621 NA non-coding upstream 192948 28226400 ~ 28228301 (+)
G31603 NA non-coding upstream 258984 28144440 ~ 28162265 (+)
LOC122342517 NA non-coding downstream 30953 28568285 ~ 28593867 (+)
G31665 NA non-coding downstream 109645 28646977 ~ 28652833 (+)
LOC122343449 NA non-coding downstream 318799 28856131 ~ 28858515 (+)
G31845 NA non-coding downstream 460396 28997728 ~ 29002977 (+)
G31846 NA non-coding downstream 466464 29003796 ~ 29023855 (+)
G31649 NA other upstream 68023 28350353 ~ 28353226 (+)
G31636 NA other upstream 100555 28285027 ~ 28320694 (+)
LOC122342379 myo7aa,myo7a,LOC107660700,LOC107735900,LOC107600840 other upstream 103667 28297302 ~ 28317582 (+)
G31619 capn5,capn5a,LOC107713096,LOC107600851,LOC107660684 other upstream 199832 28218733 ~ 28221417 (+)
G31614 capn5a,capn5,LOC107665347,LOC107660684,LOC107600851,LOC106535735 other upstream 205001 28206958 ~ 28216248 (+)
LOC122343276 LOC107561645,LOC107679413,LOC107569100,LOC107747810,LOC107734660,LOC107655025 other downstream 293303 28830635 ~ 28893627 (+)
LOC122342386 LOC107670352,LOC107565530,LOC107659779,LOC107747635,LOC107566978,LOC107561645,LOC107665206,LOC108183462,LOC107749046,LOC107574515,LOC107671223,LOC107663329,LOC107575399,LOC107576964,LOC107571858,LOC107575109,LOC107698614 other downstream 468433 29005765 ~ 29185529 (+)

Expression


Co-expression Network