LOC122343310 (LOC107752528,LOC107549854)


Basic Information

Item Value
gene id LOC122343310
gene name LOC107752528,LOC107549854
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27966309 ~ 27969769 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237697.1
GCCTAAAGGAATGTTAATATAACAGCTATAAAAgctaaaatttgaaaaataaacacctGAGAAAGTTTTTGGCTCCTCCCGCCTTTTTGTGTACAGGCTGTGTGATTTACATGGAGAAACTGATTAGATTTATGTTATGACACCTTGCAACAGTTGATGGTGCTGGCTTGTGTTTCTTAAATGAACACAAGaacataaaaatcacaaatgcaaTAATTAAGTAACTGACAAGAGGTTATACTTAAAGGTTTttcataagttttttttttttcgcaccTAAATGGGAACCCTCGTCATGTCCGTGTCATAGTAATATCCAAAActtatgcaaaatatgcaaagcGTCATCTTCAGGGCCTGTCCCGTCGGGTGCGTCAGACATGGCCCTGTAAGGAGGACTCTCAGGACGCACCTGAGTCTCGCGCGTTCTCTAATGGGTGGAGCGATGGACAAGACAACGGTCACAACTATTTCAAAAACCACTCAGTACATTACAATCGCCATGTTCTTAATGGCATGCTTTACCATCTACATGTGCTGCAACTCAACCAAACATTTGTTCGGCAAATCCATCGCCGCACGCGTCCAGATAAACAACATCAGTGCAGAAACTTGCCTCAGTGTTCTTAAGACGCAGAACTACAAGTGTGCCGCGAACACCACCCCGGACGAACATCTGATAGGAGCGTctaaagagaaagaagaaccAGACACACTTCTGTTGATCTGGATGTGGCCTTTCCGGGACAGATTTGAATTGGCACCCTGCAGTTCGGCCTTCGATATCCATGGCTGTCGTCTAACGGATGACAGAGATCTGTTTAACCAAGCGCATGGGGTGATGTTTCATCATAGAGATATCAGTAGGGATTTATCCAACATGCCTCAACTCCCACGACCAGCTTTCCAGAAGTGGGTATGGTGGAATATGGAGTCTCCGAGTAATTCGTATCCACTTCCCTTGCTAAAGGATCTGTTTAATCTGACTTCAAGCTACCGATGGGATTCAGACATCCCAGTGCCTTACGGTAGGATCACGTACaccagagaggaagagaaaaaataCACCATCCCAAAGAAGGACAGATTAGTTTGTTGGGTAGTAAGTAACTATAACCCAGACTTTAAGCGTTCACAATACTACACTGAGTTAGTGAAATCCGTTAAAGTGTCGGTTTATGGCAGGCAGTTCAACAATGCAGTTAATGGTGAAGAGTATACAAATTTAGTGTCCAGTTGCAAGTTCTACCTGTCTTTTGAGAATTCCATCCATAGAGACTACGTGACCGAGAAGCTGTTCAATGCTCTGGTGCTGGGTGCCGTTCCTGTCGTTCTTGGCCCTCCCAGAGAAAACTATGAGCTGTTCCTGCCGAGCGAAGCCTTCATCCACGTGGATGACTTTCCGTCCGCAAAAGAACTGGCCGAACATCTGAAACTCCTGGACCAAAATGAGGACCTGTATAAACGGCACTTCACCTGGAGAGAACGTTtcgtttcaaaaacaaacatctttgGTCTTGAACACGCCTGTCGGATCTGTGATCATATTAGAAGGAATAAGCACTATAAAGTGGTCAAAGATCTCAACAGCTGGTTCTGGAGTTGAGGGCACTTTAAGAGACGCTGATCACGAGTAAGAcctttcggtaacactttacaataaggtgccatttgttaacattacttaatatattaactaacatgaactaacaatgagcaacgcatttattacagtatttattcatctttgtaaACTTtcgttcatgttagctcacagtgcattaactaatgttaacaaacactacttgtgattttaataatgcattagttgTTACCAACATTTAACCTCCTTTAGTTTTAACAGTCAGGGTAGTAGGGAGATGTGGGCCACCTTAACATGTTTACTGTTCCAATGTCAGTGCATTATGTTATTTTCTGCAGAATGAAGGATaaaaagatattattattattattttatttttgtgtgtgtgtgttgtaaataaACTCACCTGCCAATCATCCATGCACTTTAACAGATGAtttaaactttcatttattgttgtactatttttatgcaatgtaACTTAACTGATGTTAAAATCAAGGTGACGTCAAAAACTGTGACGATGTTGATTTGCTGTAAACGGAATGTCAAACATAACCCATACGCACAATAAACTGGTTTTAGTGTGGGA
>XM_043237698.1
CggagtttgttttgatttgatattttctGTTGAAATAGAAAATGCATACAATTAATAGTTGAACCTGCGTTTCTTTATACCCCGTGGAAAGACAATCGAGTTATTTCGCGTTGGGCTATTTGGAAATCAAACATTTGTCGCGCAATAGTAGCGACCTGCTGtcaatttaaagtttaaaaaaatgttgccttttaactattttaatgtaaaaacaaaagttgaTGGAGTTCAGCCTAGCTTTCATCCAGTGCGTACAAATAAGGAAAATCCAATTGCATGTAAATGTACTGGTGATGCACGGAGGACGGAGTAGTGTCGCTTTGGTAGGCTATACTTTCACTCTCGGAGTGGGTCCTGTACTCACCCGGCTGCCAGTTGACCCAAACATTGATCAGAGGTGCCCGGCGACATTGCCCAGAAAGTTCCCAGCATCACCAGCCCAAGGAAAACTGGAAGAACCGCATCGCGAAAGTAGAttcattttaaaccataaaGCTCCGTTCCTTTAATATACTAAACCTGGAAGATGTCGCATCAGTTTAGTTTTTCTGTAAGTTATACAAACATAcgtttttacagtataattatatatttaggttAAGTAATGGGTAATATTAACCTATACGTGCTCAGGCTTAATGTTTGAGAATTATGCATATAATTAGCAAAGAATtccaaaatgaaatgttattgaATATTTTGCCATACGACTCTGATcacttatatattttaaagccaattttataatttttcaccctggagcacaaaactaAGAAGCATTAGCAAAACGCAGCAAAGCACAGCATGGTTCAAAATAATCTAATTTTCTTGTATGCCAAAAATCAAGGGGGTGAAGATCATGTTGCATGAAGATAGTTGTAAACTTCGTAtcgtaaataaatcaaaactcagcttttaattagtaatatgcattgctatttGGATTAACAGCGATCGTTTGCTGTTCGTAGATTTCACGTCTGAAAGACGCATGCGCGTGATTTCCGGTCGTAAATTCATTCTATGTGCAGGTACGCGTATCGAAAAAATGATGCGATGGACAAGACAACGGTCACAACTATTTCAAAAACCACTCAGTACATTACAATCGCCATGTTCTTAATGGCATGCTTTACCATCTACATGTGCTGCAACTCAACCAAACATTTGTTCGGCAAATCCATCGCCGCACGCGTCCAGATAAACAACATCAGTGCAGAAACTTGCCTCAGTGTTCTTAAGACGCAGAACTACAAGTGTGCCGCGAACACCACCCCGGACGAACATCTGATAGGAGCGTctaaagagaaagaagaaccAGACACACTTCTGTTGATCTGGATGTGGCCTTTCCGGGACAGATTTGAATTGGCACCCTGCAGTTCGGCCTTCGATATCCATGGCTGTCGTCTAACGGATGACAGAGATCTGTTTAACCAAGCGCATGGGGTGATGTTTCATCATAGAGATATCAGTAGGGATTTATCCAACATGCCTCAACTCCCACGACCAGCTTTCCAGAAGTGGGTATGGTGGAATATGGAGTCTCCGAGTAATTCGTATCCACTTCCCTTGCTAAAGGATCTGTTTAATCTGACTTCAAGCTACCGATGGGATTCAGACATCCCAGTGCCTTACGGTAGGATCACGTACaccagagaggaagagaaaaaataCACCATCCCAAAGAAGGACAGATTAGTTTGTTGGGTAGTAAGTAACTATAACCCAGACTTTAAGCGTTCACAATACTACACTGAGTTAGTGAAATCCGTTAAAGTGTCGGTTTATGGCAGGCAGTTCAACAATGCAGTTAATGGTGAAGAGTATACAAATTTAGTGTCCAGTTGCAAGTTCTACCTGTCTTTTGAGAATTCCATCCATAGAGACTACGTGACCGAGAAGCTGTTCAATGCTCTGGTGCTGGGTGCCGTTCCTGTCGTTCTTGGCCCTCCCAGAGAAAACTATGAGCTGTTCCTGCCGAGCGAAGCCTTCATCCACGTGGATGACTTTCCGTCCGCAAAAGAACTGGCCGAACATCTGAAACTCCTGGACCAAAATGAGGACCTGTATAAACGGCACTTCACCTGGAGAGAACGTTtcgtttcaaaaacaaacatctttgGTCTTGAACACGCCTGTCGGATCTGTGATCATATTAGAAGGAATAAGCACTATAAAGTGGTCAAAGATCTCAACAGCTGGTTCTGGAGTTGAGGGCACTTTAAGAGACGCTGATCACGAGTAAGAcctttcggtaacactttacaataaggtgccatttgttaacattacttaatatattaactaacatgaactaacaatgagcaacgcatttattacagtatttattcatctttgtaaACTTtcgttcatgttagctcacagtgcattaactaatgttaacaaacactacttgtgattttaataatgcattagttgTTACCAACATTTAACCTCCTTTAGTTTTAACAGTCAGGGTAGTAGGGAGATGTGGGCCACCTTAACATGTTTACTGTTCCAATGTCAGTGCATTATGTTATTTTCTGCAGAATGAAGGATaaaaagatattattattattattttatttttgtgtgtgtgtgttgtaaataaACTCACCTGCCAATCATCCATGCACTTTAACAGATGAtttaaactttcatttattgttgtactatttttatgcaatgtaACTTAACTGATGTTAAAATCAAGGTGACGTCAAAAACTGTGACGATGTTGATTTGCTGTAAACGGAATGTCAAACATAACCCATACGCACAATAAACTGGTTTTAGTGTGGGA

Function

NR:

description
PREDICTED: alpha-(1,3)-fucosyltransferase 9-like

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00753 E2.4.1.214; glycoprotein 3-alpha-L-fucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237697.1 False 2195 mRNA 0.41 2 27966309 27969769
XM_043237698.1 True 2806 mRNA 0.40 2 27966309 27969320

Neighbor

gene id symbol gene type direction distance location
pdk2b pdk2b,LOC107665156,LOC107752527,LOC107549851,LOC107753849,LOC107562510,LOC107666345 coding downstream 14312 27946996 ~ 27951997 (-)
flot1a flot1a,LOC107665160,LOC107549850,LOC107752515,LOC107666343,LOC103027319,LOC108433738 coding downstream 550659 27409088 ~ 27415650 (-)
LOC122342367 NA coding downstream 1097161 26865773 ~ 26869148 (-)
trnas-uga_106 NA coding downstream 1238915 26727313 ~ 26727394 (-)
trnak-uuu_100 NA coding downstream 1240412 26725825 ~ 26725897 (-)
wipf2b wipf2b,LOC107752530,LOC107549849,LOC107562512,LOC107665117 coding upstream 141 27969910 ~ 27977175 (-)
jupb jupb,LOC107562513,LOC107752531,LOC107549862,LOC107665165,LOC105013272,LOC108438403 coding upstream 11301 27981070 ~ 28037700 (-)
LOC122342469 si:dkeyp-113d7.1,LOC107727714,LOC107549870,LOC107563030,LOC107665141,LOC103032369 coding upstream 143733 28113502 ~ 28118332 (-)
LOC122342473 znf362b,LOC107593390,LOC107737708,LOC107565834,LOC107699608,LOC107712695,LOC107671956,LOC108434701 coding upstream 201482 28171251 ~ 28177586 (-)
LOC122343218 omp,ompa,LOC107735103 coding upstream 242477 28212246 ~ 28213047 (-)
G31728 NA non-coding downstream 23505 27941679 ~ 27942804 (-)
G31723 NA non-coding downstream 43133 27920620 ~ 27923176 (-)
G31718 LOC107549838,LOC107752523,LOC107554337,LOC107754066,LOC107666346,LOC107665176 non-coding downstream 61626 27898767 ~ 27904683 (-)
G31692 NA non-coding downstream 146056 27820024 ~ 27820253 (-)
G31517 NA non-coding downstream 319884 27645026 ~ 27646425 (-)
G31736 NA non-coding upstream 110406 28080175 ~ 28080381 (-)
G31737 NA non-coding upstream 126125 28095894 ~ 28096491 (-)
LOC122342474 NA non-coding upstream 157445 28127214 ~ 28129808 (-)
G31759 NA non-coding upstream 256645 28226414 ~ 28228301 (-)
G31765 NA non-coding upstream 275221 28244990 ~ 28250107 (-)
G31508 LOC106519560,LOC107665151,LOC102211354,LOC101487824,LOC102313318,LOC102779181 other downstream 321577 27642692 ~ 27644732 (-)
G31503 pvrl2l,LOC107549846,LOC107665153,LOC107554349,LOC107752518,LOC107753776,LOC107666334 other downstream 350368 27539355 ~ 27615941 (-)
LOC122342454 kifc1,LOC107665178,LOC107753731,LOC107666336,LOC107549825,LOC107554333 other downstream 576911 27383753 ~ 27389398 (-)
G31467 zbtb22b,LOC107752533,LOC107665126,LOC107666316,LOC107549842,LOC107554346,LOC107753716 other downstream 583482 27379059 ~ 27382827 (-)
G31463 LOC107665166,LOC107752513,LOC107549841 other downstream 598660 27366412 ~ 27367649 (-)
eif1 eif1b,LOC107549864,LOC103043673,LOC107666344,LOC107665169 other upstream 95528 28065297 ~ 28067762 (-)
LOC122342471 si:dkeyp-113d7.10,LOC107753946,LOC107666338,LOC107563029,LOC107727707,LOC107549831 other upstream 150478 28120247 ~ 28130380 (-)
LOC122342472 znf384l,LOC107665159,LOC107752514 other upstream 211797 28181566 ~ 28187257 (-)
G31776 LOC107712874 other upstream 394256 28364025 ~ 28365196 (-)
G31868 NA other upstream 874424 28844193 ~ 28846421 (-)

Expression


Co-expression Network